Wall clock time and date at job start Tue Mar 31 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46691 * 2 1 4 4 C 1.34952 * 126.03697 * 124.97917 * 3 2 1 5 5 C 1.35316 * 107.74837 * 179.74436 * 4 3 2 6 6 C 1.50698 * 126.04140 * 180.27470 * 5 4 3 7 7 H 1.08997 * 109.46892 * 25.22597 * 6 5 4 8 8 C 1.53238 * 109.46946 * 145.22437 * 6 5 4 9 9 S 1.81735 * 108.79813 * 177.66108 * 8 6 5 10 10 O 1.42098 * 109.47291 * 61.49042 * 9 8 6 11 11 C 1.81744 * 102.30502 * 305.45683 * 9 8 6 12 12 C 1.53235 * 108.80135 * 54.54255 * 11 9 8 13 13 N 1.46379 * 109.48246 * 302.34445 * 12 11 9 14 14 C 1.34777 * 119.64827 * 245.10619 * 13 12 11 15 15 O 1.21277 * 120.00329 * 185.52600 * 14 13 12 16 16 C 1.50708 * 119.99897 * 5.52516 * 14 13 12 17 17 C 1.53000 * 109.47261 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.46839 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00382 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99511 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99527 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47553 * 60.00131 * 22 20 18 24 24 H 1.48505 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47297 * 299.99734 * 22 20 18 26 26 C 1.39871 * 107.91547 * 0.39656 * 5 4 3 27 27 N 1.30830 * 108.20561 * 359.59216 * 26 5 4 28 28 H 1.09000 * 109.47278 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46867 * 299.99892 * 1 2 3 31 31 H 1.08996 * 109.46867 * 240.00108 * 2 1 3 32 32 H 1.08996 * 109.46912 * 120.00356 * 2 1 3 33 33 H 1.07999 * 126.12272 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.57880 * 297.45058 * 8 6 5 35 35 H 1.08991 * 109.58510 * 57.86287 * 8 6 5 36 36 H 1.09004 * 109.58026 * 174.33795 * 11 9 8 37 37 H 1.09003 * 109.58279 * 294.74431 * 11 9 8 38 38 H 1.08999 * 109.46962 * 62.35009 * 12 11 9 39 39 H 1.08994 * 109.47196 * 182.34420 * 12 11 9 40 40 H 1.09002 * 109.46871 * 300.00059 * 16 14 13 41 41 H 1.08999 * 109.47032 * 59.99518 * 16 14 13 42 42 H 1.08995 * 109.46698 * 300.00241 * 17 16 14 43 43 H 1.09002 * 109.46761 * 59.99752 * 17 16 14 44 44 H 0.97008 * 119.99816 * 180.02562 * 21 20 18 45 45 H 1.08004 * 125.89468 * 179.86784 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9213 0.8941 5 6 3.0758 3.2122 0.5429 6 6 3.9649 4.1964 1.2584 7 1 4.7429 3.6570 1.7986 8 6 4.6114 5.1374 0.2363 9 16 5.6236 6.3588 1.1231 10 8 6.6538 5.6906 1.8382 11 6 4.4328 7.0687 2.2983 12 6 3.8044 5.9322 3.1117 13 7 3.1661 4.9774 2.2042 14 6 1.8285 4.8159 2.2396 15 8 1.3032 3.9569 1.5635 16 6 0.9854 5.7026 3.1195 17 6 -0.4871 5.3135 2.9744 18 6 -1.3301 6.2006 3.8538 19 1 -0.8624 6.9652 4.4562 20 6 -2.6985 6.0354 3.8899 21 7 -3.2679 5.1034 3.1574 22 14 -3.7435 7.1356 4.9794 23 1 -3.5638 8.5518 4.5706 24 1 -5.1727 6.7570 4.8396 25 1 -3.3249 6.9720 6.3948 26 6 2.3125 3.4724 -0.5999 27 7 1.6809 2.3747 -0.9282 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3178 1.4130 1.7367 34 1 5.2427 4.5626 -0.4413 35 1 3.8345 5.6496 -0.3312 36 1 4.9475 7.7568 2.9690 37 1 3.6540 7.6013 1.7525 38 1 4.5794 5.4250 3.6863 39 1 3.0576 6.3420 3.7917 40 1 1.2929 5.5817 4.1583 41 1 1.1173 6.7424 2.8203 42 1 -0.7942 5.4347 1.9356 43 1 -0.6193 4.2736 3.2733 44 1 -4.2307 4.9875 3.1825 45 1 2.2577 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347433866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:08 Heat of formation + Delta-G solvation = 27.612695 kcal Electronic energy + Delta-G solvation = -28463.710013 eV Core-core repulsion = 24610.750475 eV Total energy + Delta-G solvation = -3852.959538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14673 -39.40785 -36.25206 -35.74171 -34.49959 -33.50669 -32.56445 -30.84567 -29.98741 -29.81834 -28.23713 -25.86169 -23.92441 -23.50401 -23.20410 -21.51586 -20.55645 -19.81865 -18.56589 -17.67207 -17.06436 -16.49206 -15.88683 -15.82326 -15.40323 -15.28900 -15.10923 -14.76040 -14.43915 -14.14903 -13.94304 -13.67996 -13.60465 -13.30077 -13.01605 -12.62428 -12.37385 -12.22513 -12.18191 -12.10491 -12.02947 -11.92540 -11.60404 -11.52333 -11.21879 -11.12276 -10.93077 -10.63273 -10.28943 -10.01981 -9.94732 -9.70668 -9.42198 -9.11103 -8.98260 -8.71391 -8.33965 -8.19809 -7.26923 -5.97711 -4.02342 1.45502 2.30241 2.36337 2.89646 2.95764 3.22966 3.32185 3.37199 3.38580 3.56293 3.69044 4.44853 4.53518 4.65458 4.74357 4.92737 4.96274 5.09347 5.11213 5.14317 5.21188 5.23983 5.37133 5.41346 5.50568 5.55114 5.63903 5.72361 5.78148 5.82317 5.90512 6.17940 6.19625 6.20742 6.34043 6.41115 6.69343 6.87377 7.07154 7.44154 7.68658 7.72085 7.84533 8.05270 8.15765 8.37168 8.79217 9.06135 9.61270 11.12933 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.004521 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.865513 B = 6191.889064 C = 9052.845390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 N -0.371 5.371 4 C 0.052 3.948 5 C -0.185 4.185 6 C 0.229 3.771 7 H 0.075 0.925 8 C -0.446 4.446 9 S 1.237 4.763 10 O -0.852 6.852 11 C -0.459 4.459 12 C 0.112 3.888 13 N -0.632 5.632 14 C 0.509 3.491 15 O -0.493 6.493 16 C -0.131 4.131 17 C 0.042 3.958 18 C -0.528 4.528 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.083 3.917 27 N -0.290 5.290 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 -0.447 -7.389 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.155 5.155 4 C -0.094 4.094 5 C -0.198 4.198 6 C 0.124 3.876 7 H 0.093 0.907 8 C -0.585 4.585 9 S 1.435 4.565 10 O -0.847 6.847 11 C -0.597 4.597 12 C -0.012 4.012 13 N -0.369 5.369 14 C 0.299 3.701 15 O -0.365 6.365 16 C -0.170 4.170 17 C 0.005 3.995 18 C -0.566 4.566 19 H 0.072 0.928 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.105 4.105 27 N -0.111 5.111 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 18.188 -1.507 -8.729 20.230 hybrid contribution -1.051 -0.400 2.792 3.011 sum 17.136 -1.908 -5.936 18.236 Atomic orbital electron populations 1.22036 0.93752 1.02145 1.04305 1.21508 0.96220 0.78004 1.02579 1.48214 1.35848 1.09712 1.21694 1.21772 0.96639 0.94979 0.95975 1.19233 1.06202 0.93715 1.00621 1.18903 0.91470 0.89303 0.87890 0.90707 1.28040 1.11148 1.11663 1.07617 1.70268 0.82332 1.03212 1.00644 1.93116 1.42083 1.75812 1.73692 1.27990 1.13233 1.05850 1.12635 1.21380 0.98992 0.88733 0.92079 1.48423 1.07520 1.42333 1.38646 1.21537 0.81000 0.84680 0.82869 1.90831 1.71263 1.32820 1.41593 1.21942 0.99188 0.98184 0.97735 1.18841 0.86061 0.96930 0.97694 1.21173 0.91877 1.17710 1.25836 0.92789 1.25009 0.98092 0.95422 0.95713 1.69990 1.10525 1.32413 1.39823 0.86679 0.79390 0.80996 0.81019 1.20202 1.21280 1.20302 1.23218 0.94421 0.96780 0.96089 1.77139 1.22176 0.97188 1.14577 0.91184 0.91367 0.91487 0.90651 0.89488 0.82676 0.86298 0.85861 0.86356 0.85701 0.91224 0.88040 0.90760 0.90412 0.95934 0.96214 0.92941 0.81542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.10 37.16 0.38 -1.81 16 2 C 0.14 1.69 7.23 -4.04 -0.03 1.67 16 3 N -0.37 -5.93 3.68 -61.37 -0.23 -6.16 16 4 C 0.05 0.80 10.52 -17.22 -0.18 0.62 16 5 C -0.18 -2.86 2.98 -105.05 -0.31 -3.17 16 6 C 0.23 3.03 3.17 -69.02 -0.22 2.81 16 7 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 8 C -0.45 -4.08 5.57 37.28 0.21 -3.88 16 9 S 1.24 9.39 13.71 -107.50 -1.47 7.92 16 10 O -0.85 -11.73 18.14 -35.23 -0.64 -12.37 16 11 C -0.46 -3.68 6.65 37.28 0.25 -3.43 16 12 C 0.11 1.31 6.12 -3.99 -0.02 1.28 16 13 N -0.63 -8.99 2.79 -167.33 -0.47 -9.46 16 14 C 0.51 9.45 7.58 -10.98 -0.08 9.37 16 15 O -0.49 -10.74 10.64 5.56 0.06 -10.68 16 16 C -0.13 -2.61 3.99 -27.88 -0.11 -2.72 16 17 C 0.04 1.13 4.26 -27.89 -0.12 1.01 16 18 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.08 1.36 9.34 -17.37 -0.16 1.20 16 27 N -0.29 -5.23 12.42 30.62 0.38 -4.85 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.16 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.12 0.98 7.21 -51.93 -0.37 0.60 16 36 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.19 5.76 -51.93 -0.30 0.89 16 40 H 0.07 1.40 7.43 -51.93 -0.39 1.01 16 41 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 42 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.17 2.37 7.38 -52.48 -0.39 1.98 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -40.24 375.09 -8.72 -48.95 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.90 Total: 1.67 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.82 Total: -10.61 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.42 Total: -47.13 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.58 Total: -23.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 9.39 SS G_CDS: -1.47 Total: 7.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.24 -8.72 -48.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347433866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.563 kcal (2) G-P(sol) polarization free energy of solvation -40.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds