Wall clock time and date at job start Tue Mar 31 2020 22:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46691 * 2 1 4 4 C 1.34952 * 126.03697 * 124.97917 * 3 2 1 5 5 C 1.35316 * 107.74837 * 179.74436 * 4 3 2 6 6 C 1.50698 * 126.04140 * 180.27470 * 5 4 3 7 7 H 1.08997 * 109.46892 * 25.22597 * 6 5 4 8 8 C 1.53238 * 109.46946 * 145.22437 * 6 5 4 9 9 S 1.81735 * 108.79813 * 177.66108 * 8 6 5 10 10 O 1.42098 * 109.47291 * 61.49042 * 9 8 6 11 11 C 1.81744 * 102.30502 * 305.45683 * 9 8 6 12 12 C 1.53235 * 108.80135 * 54.54255 * 11 9 8 13 13 N 1.46379 * 109.48246 * 302.34445 * 12 11 9 14 14 C 1.34777 * 119.64827 * 245.10619 * 13 12 11 15 15 O 1.21277 * 120.00329 * 185.52600 * 14 13 12 16 16 C 1.50708 * 119.99897 * 5.52516 * 14 13 12 17 17 C 1.53000 * 109.47261 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.46839 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00382 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99511 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99527 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47553 * 60.00131 * 22 20 18 24 24 H 1.48505 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47297 * 299.99734 * 22 20 18 26 26 C 1.39871 * 107.91547 * 0.39656 * 5 4 3 27 27 N 1.30830 * 108.20561 * 359.59216 * 26 5 4 28 28 H 1.09000 * 109.47278 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46867 * 299.99892 * 1 2 3 31 31 H 1.08996 * 109.46867 * 240.00108 * 2 1 3 32 32 H 1.08996 * 109.46912 * 120.00356 * 2 1 3 33 33 H 1.07999 * 126.12272 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.57880 * 297.45058 * 8 6 5 35 35 H 1.08991 * 109.58510 * 57.86287 * 8 6 5 36 36 H 1.09004 * 109.58026 * 174.33795 * 11 9 8 37 37 H 1.09003 * 109.58279 * 294.74431 * 11 9 8 38 38 H 1.08999 * 109.46962 * 62.35009 * 12 11 9 39 39 H 1.08994 * 109.47196 * 182.34420 * 12 11 9 40 40 H 1.09002 * 109.46871 * 300.00059 * 16 14 13 41 41 H 1.08999 * 109.47032 * 59.99518 * 16 14 13 42 42 H 1.08995 * 109.46698 * 300.00241 * 17 16 14 43 43 H 1.09002 * 109.46761 * 59.99752 * 17 16 14 44 44 H 0.97008 * 119.99816 * 180.02562 * 21 20 18 45 45 H 1.08004 * 125.89468 * 179.86784 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9213 0.8941 5 6 3.0758 3.2122 0.5429 6 6 3.9649 4.1964 1.2584 7 1 4.7429 3.6570 1.7986 8 6 4.6114 5.1374 0.2363 9 16 5.6236 6.3588 1.1231 10 8 6.6538 5.6906 1.8382 11 6 4.4328 7.0687 2.2983 12 6 3.8044 5.9322 3.1117 13 7 3.1661 4.9774 2.2042 14 6 1.8285 4.8159 2.2396 15 8 1.3032 3.9569 1.5635 16 6 0.9854 5.7026 3.1195 17 6 -0.4871 5.3135 2.9744 18 6 -1.3301 6.2006 3.8538 19 1 -0.8624 6.9652 4.4562 20 6 -2.6985 6.0354 3.8899 21 7 -3.2679 5.1034 3.1574 22 14 -3.7435 7.1356 4.9794 23 1 -3.5638 8.5518 4.5706 24 1 -5.1727 6.7570 4.8396 25 1 -3.3249 6.9720 6.3948 26 6 2.3125 3.4724 -0.5999 27 7 1.6809 2.3747 -0.9282 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3178 1.4130 1.7367 34 1 5.2427 4.5626 -0.4413 35 1 3.8345 5.6496 -0.3312 36 1 4.9475 7.7568 2.9690 37 1 3.6540 7.6013 1.7525 38 1 4.5794 5.4250 3.6863 39 1 3.0576 6.3420 3.7917 40 1 1.2929 5.5817 4.1583 41 1 1.1173 6.7424 2.8203 42 1 -0.7942 5.4347 1.9356 43 1 -0.6193 4.2736 3.2733 44 1 -4.2307 4.9875 3.1825 45 1 2.2577 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347433866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:08 Heat of formation + Delta-G solvation = -2.204240 kcal Electronic energy + Delta-G solvation = -28465.002972 eV Core-core repulsion = 24610.750475 eV Total energy + Delta-G solvation = -3854.252498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35501 -40.71861 -37.51806 -36.67681 -35.79253 -35.32880 -33.79902 -32.58181 -31.15784 -30.92010 -29.30288 -27.76866 -24.97027 -24.71424 -24.40247 -23.13889 -21.75120 -21.12760 -19.84612 -18.88131 -18.32692 -17.88362 -17.34281 -17.01251 -16.63226 -16.44043 -16.25826 -16.08454 -15.72131 -15.28282 -15.16729 -14.85653 -14.70194 -14.61916 -14.23893 -13.97812 -13.80951 -13.69438 -13.35569 -13.29523 -13.13796 -13.01271 -12.95686 -12.79505 -12.53445 -12.46040 -12.39416 -12.25711 -11.91252 -11.61125 -11.45992 -11.31777 -10.93085 -10.82177 -10.57681 -10.19261 -9.83862 -9.05941 -8.54015 -8.19152 -6.33494 0.78127 1.10678 1.39981 1.44127 1.51812 1.66981 1.69573 1.84261 1.86748 2.34764 2.43190 2.95294 3.13805 3.53384 3.67912 3.80020 3.93880 3.98826 4.05497 4.10924 4.16603 4.21205 4.27582 4.39383 4.43050 4.48788 4.52962 4.61822 4.68308 4.73947 4.78444 4.97134 5.06853 5.09188 5.15472 5.19283 5.29678 5.46523 5.59269 5.62895 5.83839 5.89052 6.16714 6.31905 6.37231 6.85328 6.93460 7.36297 7.39995 8.92716 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.004521 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.865513 B = 6191.889064 C = 9052.845390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 N -0.377 5.377 4 C 0.036 3.964 5 C -0.190 4.190 6 C 0.225 3.775 7 H 0.070 0.930 8 C -0.449 4.449 9 S 1.314 4.686 10 O -0.909 6.909 11 C -0.458 4.458 12 C 0.101 3.899 13 N -0.618 5.618 14 C 0.511 3.489 15 O -0.534 6.534 16 C -0.119 4.119 17 C 0.054 3.946 18 C -0.542 4.542 19 H 0.074 0.926 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.289 1.289 25 H -0.264 1.264 26 C 0.074 3.926 27 N -0.330 5.330 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.174 0.826 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.104 0.896 42 H -0.019 1.019 43 H -0.028 1.028 44 H 0.261 0.739 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.195 1.667 -6.518 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 N -0.162 5.162 4 C -0.110 4.110 5 C -0.203 4.203 6 C 0.121 3.879 7 H 0.088 0.912 8 C -0.586 4.586 9 S 1.513 4.487 10 O -0.905 6.905 11 C -0.597 4.597 12 C -0.022 4.022 13 N -0.354 5.354 14 C 0.300 3.700 15 O -0.409 6.409 16 C -0.158 4.158 17 C 0.016 3.984 18 C -0.580 4.580 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.184 1.184 24 H -0.215 1.215 25 H -0.189 1.189 26 C -0.113 4.113 27 N -0.152 5.152 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.191 0.809 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.122 0.878 42 H -0.001 1.001 43 H -0.009 1.009 44 H 0.070 0.930 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 19.896 0.628 -7.852 21.399 hybrid contribution -1.565 -1.114 2.539 3.184 sum 18.331 -0.486 -5.313 19.092 Atomic orbital electron populations 1.21967 0.94906 1.03405 1.01181 1.21836 0.95218 0.76941 1.04987 1.48521 1.35784 1.10504 1.21343 1.22256 0.96644 0.95695 0.96385 1.19502 1.06251 0.94152 1.00379 1.19074 0.90629 0.89801 0.88432 0.91204 1.28141 1.11740 1.11502 1.07257 1.69725 0.79984 1.00416 0.98601 1.93002 1.45541 1.76798 1.75118 1.28065 1.13712 1.05034 1.12846 1.21642 0.99006 0.89298 0.92298 1.48289 1.06032 1.42374 1.38725 1.21215 0.82394 0.84064 0.82327 1.90844 1.72536 1.34353 1.43199 1.21688 0.95058 0.99838 0.99246 1.18566 0.90792 0.94240 0.94801 1.21676 0.92486 1.17998 1.25849 0.90770 1.26100 0.99920 0.96939 0.97226 1.70183 1.10847 1.34727 1.41977 0.85427 0.76835 0.79217 0.79103 1.18386 1.21470 1.18901 1.23537 0.94205 0.96990 0.96600 1.77043 1.23502 0.98373 1.16240 0.93412 0.87903 0.95290 0.88360 0.86866 0.80907 0.85087 0.84254 0.83951 0.83593 0.91468 0.87853 0.89244 0.87783 1.00077 1.00930 0.93013 0.80182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 10.10 71.98 0.73 -3.63 16 2 C 0.13 3.20 7.23 86.38 0.62 3.82 16 3 N -0.38 -12.41 3.68 -348.07 -1.28 -13.69 16 4 C 0.04 1.13 10.52 83.54 0.88 2.01 16 5 C -0.19 -5.90 2.98 -20.14 -0.06 -5.96 16 6 C 0.23 5.70 3.17 44.35 0.14 5.84 16 7 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 8 C -0.45 -7.19 5.57 72.06 0.40 -6.79 16 9 S 1.31 15.97 13.71 -56.49 -0.77 15.20 16 10 O -0.91 -23.03 18.14 -148.98 -2.70 -25.74 16 11 C -0.46 -5.58 6.65 72.06 0.48 -5.10 16 12 C 0.10 2.08 6.12 86.48 0.53 2.61 16 13 N -0.62 -16.77 2.79 -801.70 -2.24 -19.00 16 14 C 0.51 18.96 7.58 87.66 0.66 19.63 16 15 O -0.53 -24.15 10.64 -3.02 -0.03 -24.18 16 16 C -0.12 -4.68 3.99 29.85 0.12 -4.56 16 17 C 0.05 2.97 4.26 29.85 0.13 3.09 16 18 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 19 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 20 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 21 N -0.94 -59.80 13.29 21.45 0.28 -59.51 16 22 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 C 0.07 2.47 9.34 85.24 0.80 3.27 16 27 N -0.33 -12.36 12.42 -57.02 -0.71 -13.07 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 1.83 7.21 -2.39 -0.02 1.82 16 36 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 2.11 5.76 -2.39 -0.01 2.10 16 40 H 0.09 3.25 7.43 -2.39 -0.02 3.23 16 41 H 0.10 3.54 8.08 -2.39 -0.02 3.52 16 42 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 43 H -0.03 -1.77 8.10 -2.39 -0.02 -1.79 16 44 H 0.26 15.71 8.31 -92.70 -0.77 14.93 16 45 H 0.18 5.17 7.38 -2.91 -0.02 5.15 16 Total: -1.00 -92.74 375.09 1.68 -91.06 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.98 Total: 18.75 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 6.12 Total: -16.03 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.94 Total: -105.28 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -2.73 Total: -49.92 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 15.97 SS G_CDS: -0.77 Total: 15.20 kcal Total: -92.74 1.68 -91.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347433866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.858 kcal (2) G-P(sol) polarization free energy of solvation -92.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds