Wall clock time and date at job start Tue Mar 31 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 C 1.34950 * 126.03771 * 124.99508 * 3 2 1 5 5 C 1.35314 * 107.74739 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.04262 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46644 * 334.96264 * 6 5 4 8 8 C 1.53235 * 109.47239 * 214.96939 * 6 5 4 9 9 S 1.81744 * 108.79836 * 182.34063 * 8 6 5 10 10 O 1.42104 * 109.47107 * 170.57563 * 9 8 6 11 11 C 1.81742 * 102.30552 * 54.54064 * 9 8 6 12 12 C 1.53753 * 108.75487 * 305.34632 * 11 9 8 13 13 N 1.46372 * 109.20830 * 57.82946 * 12 11 9 14 14 C 1.34779 * 119.64888 * 114.90927 * 13 12 11 15 15 O 1.21279 * 120.00299 * 174.19090 * 14 13 12 16 16 C 1.50700 * 119.99626 * 354.20043 * 14 13 12 17 17 C 1.52995 * 109.47033 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47363 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00552 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99758 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00280 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46752 * 90.00446 * 22 20 18 24 24 H 1.48501 * 109.46925 * 210.00157 * 22 20 18 25 25 H 1.48495 * 109.46972 * 330.00298 * 22 20 18 26 26 C 1.39876 * 107.91979 * 0.27069 * 5 4 3 27 27 N 1.30837 * 108.19987 * 359.54996 * 26 5 4 28 28 H 1.08999 * 109.47216 * 299.99403 * 1 2 3 29 29 H 1.09000 * 109.47328 * 59.99951 * 1 2 3 30 30 H 1.09004 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47609 * 239.99942 * 2 1 3 32 32 H 1.09000 * 109.47328 * 120.00049 * 2 1 3 33 33 H 1.08002 * 126.12948 * 359.96386 * 4 3 2 34 34 H 1.08998 * 109.58183 * 302.13139 * 8 6 5 35 35 H 1.08994 * 109.58229 * 62.54793 * 8 6 5 36 36 H 1.09003 * 109.58340 * 65.25447 * 11 9 8 37 37 H 1.09002 * 109.58190 * 185.52809 * 11 9 8 38 38 H 1.09006 * 109.61156 * 297.91282 * 12 11 9 39 39 H 1.08996 * 109.60874 * 177.75252 * 12 11 9 40 40 H 1.08995 * 109.47485 * 299.99670 * 16 14 13 41 41 H 1.09002 * 109.47430 * 59.99834 * 16 14 13 42 42 H 1.09001 * 109.47491 * 299.99791 * 17 16 14 43 43 H 1.09002 * 109.47604 * 60.00075 * 17 16 14 44 44 H 0.96994 * 120.00090 * 179.97438 * 21 20 18 45 45 H 1.07995 * 125.89915 * 179.73830 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0721 3.2134 0.5457 6 6 3.9550 4.1998 1.2658 7 1 4.0594 3.9002 2.3086 8 6 3.3252 5.5950 1.1958 9 16 4.4373 6.7810 2.0082 10 8 3.9793 8.1038 1.7639 11 6 6.0034 6.5098 1.1268 12 6 6.3638 5.0172 1.2070 13 7 5.2742 4.2272 0.6317 14 6 5.4891 3.5128 -0.4908 15 8 4.6255 2.7742 -0.9143 16 6 6.8028 3.6319 -1.2196 17 6 6.7873 2.7232 -2.4504 18 6 8.1007 2.8427 -3.1796 19 1 8.8697 3.5007 -2.8026 20 6 8.3211 2.1113 -4.3274 21 7 7.3849 1.3097 -4.7862 22 14 9.9495 2.2590 -5.2309 23 1 10.9020 1.2498 -4.7023 24 1 9.7338 2.0242 -6.6813 25 1 10.5068 3.6202 -5.0272 26 6 2.3082 3.4739 -0.5967 27 7 1.6808 2.3747 -0.9282 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3182 1.4129 1.7365 34 1 3.1851 5.8808 0.1534 35 1 2.3628 5.5874 1.7073 36 1 5.8914 6.8051 0.0835 37 1 6.7915 7.1022 1.5916 38 1 6.5090 4.7314 2.2488 39 1 7.2811 4.8319 0.6484 40 1 6.9524 4.6652 -1.5324 41 1 7.6145 3.3317 -0.5569 42 1 6.6379 1.6899 -2.1373 43 1 5.9756 3.0230 -3.1133 44 1 7.5397 0.7954 -5.5939 45 1 2.2491 4.4184 -1.1171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347433867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:11 Heat of formation + Delta-G solvation = 26.579942 kcal Electronic energy + Delta-G solvation = -28220.988082 eV Core-core repulsion = 24367.983760 eV Total energy + Delta-G solvation = -3853.004322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15947 -39.41748 -36.33392 -35.68274 -34.54105 -33.51745 -32.57527 -30.83777 -30.03679 -29.81388 -28.28641 -25.86989 -23.97820 -23.56075 -23.26172 -21.53904 -20.56320 -19.83802 -18.65967 -17.45946 -17.07714 -16.54388 -15.93722 -15.82184 -15.28949 -15.22210 -15.09996 -14.78590 -14.60420 -14.41504 -13.93981 -13.72292 -13.69565 -13.35844 -13.03857 -12.72714 -12.39577 -12.25348 -12.18356 -12.10362 -12.06902 -11.86705 -11.79863 -11.55836 -11.34751 -11.10980 -10.94793 -10.61116 -10.27585 -10.02567 -9.95288 -9.70639 -9.42635 -9.09681 -8.96957 -8.51812 -8.44399 -8.33468 -7.28737 -5.97740 -4.02339 1.40201 2.30233 2.35050 2.86643 2.96137 3.21415 3.31142 3.37600 3.40030 3.57600 3.62562 4.44943 4.51682 4.63358 4.75846 4.87991 4.96033 4.98059 5.06550 5.10326 5.18634 5.20731 5.37248 5.38542 5.46331 5.49742 5.58706 5.66412 5.73241 5.76468 5.82436 5.99823 6.17625 6.20136 6.23194 6.37483 6.70500 6.87748 7.05115 7.43614 7.68023 7.72442 7.84686 8.05380 8.14857 8.37222 8.79047 9.06499 9.61434 11.12996 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.004399 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.652966 B = 6363.680888 C = 9363.223846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 N -0.370 5.370 4 C 0.054 3.946 5 C -0.187 4.187 6 C 0.249 3.751 7 H 0.091 0.909 8 C -0.447 4.447 9 S 1.234 4.766 10 O -0.858 6.858 11 C -0.459 4.459 12 C 0.133 3.867 13 N -0.635 5.635 14 C 0.508 3.492 15 O -0.494 6.494 16 C -0.132 4.132 17 C 0.041 3.959 18 C -0.527 4.527 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.080 3.920 27 N -0.290 5.290 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.260 0.740 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 2.805 21.447 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 N -0.154 5.154 4 C -0.091 4.091 5 C -0.200 4.200 6 C 0.144 3.856 7 H 0.109 0.891 8 C -0.586 4.586 9 S 1.434 4.566 10 O -0.853 6.853 11 C -0.598 4.598 12 C 0.008 3.992 13 N -0.372 5.372 14 C 0.298 3.702 15 O -0.365 6.365 16 C -0.172 4.172 17 C 0.004 3.996 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.108 4.108 27 N -0.111 5.111 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.178 0.822 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.734 2.228 20.955 23.212 hybrid contribution 1.508 0.938 -2.433 3.012 sum -8.227 3.166 18.522 20.512 Atomic orbital electron populations 1.22039 0.94385 1.02332 1.03267 1.21526 0.95366 0.78319 1.03463 1.48207 1.36500 1.09572 1.21117 1.21769 0.96732 0.93645 0.96955 1.19228 1.05720 0.94512 1.00558 1.18640 0.80944 0.90044 0.95963 0.89102 1.28047 1.11724 1.07791 1.11006 1.70220 0.87459 0.87203 1.11738 1.93120 1.78054 1.31142 1.82969 1.28092 1.17077 1.03123 1.11492 1.21292 0.91182 0.86346 1.00331 1.48439 1.10762 1.49727 1.28262 1.21534 0.90722 0.78790 0.79157 1.90834 1.44594 1.36238 1.64878 1.21940 0.92477 1.02934 0.99817 1.18848 0.96869 0.94108 0.89803 1.21217 1.00440 1.25494 1.09402 0.92726 1.25015 0.96636 0.95312 0.97316 1.70000 1.32997 1.27105 1.22670 0.86617 0.84062 0.78371 0.79067 1.20644 1.21233 1.19895 1.23222 0.95915 0.96701 0.94945 1.77169 1.25059 0.96346 1.12506 0.92420 0.91221 0.91179 0.90053 0.89246 0.82211 0.88867 0.85905 0.88853 0.85969 0.89633 0.87966 0.90708 0.90413 0.96045 0.96110 0.92995 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.10 37.15 0.38 -1.18 16 2 C 0.13 1.52 7.23 -4.04 -0.03 1.49 16 3 N -0.37 -5.54 3.68 -61.37 -0.23 -5.76 16 4 C 0.05 0.73 10.53 -17.22 -0.18 0.55 16 5 C -0.19 -2.61 2.96 -105.05 -0.31 -2.92 16 6 C 0.25 2.58 3.16 -69.02 -0.22 2.36 16 7 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 8 C -0.45 -4.29 5.56 37.28 0.21 -4.08 16 9 S 1.23 10.09 13.71 -107.50 -1.47 8.62 16 10 O -0.86 -12.99 18.14 -35.23 -0.64 -13.63 16 11 C -0.46 -3.89 6.67 37.55 0.25 -3.64 16 12 C 0.13 1.12 6.16 -3.72 -0.02 1.10 16 13 N -0.63 -7.69 2.78 -167.01 -0.46 -8.15 16 14 C 0.51 8.96 7.58 -10.98 -0.08 8.88 16 15 O -0.49 -10.45 10.66 5.56 0.06 -10.39 16 16 C -0.13 -2.57 3.99 -27.89 -0.11 -2.68 16 17 C 0.04 1.10 4.26 -27.89 -0.12 0.98 16 18 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.08 1.33 9.36 -17.36 -0.16 1.17 16 27 N -0.29 -5.19 12.42 30.62 0.38 -4.81 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.09 1.15 7.21 -51.93 -0.37 0.78 16 35 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.95 5.77 -51.93 -0.30 0.65 16 40 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 41 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 42 H 0.02 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.02 0.62 8.10 -51.93 -0.42 0.19 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.16 2.58 7.37 -52.49 -0.39 2.19 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -41.80 375.16 -8.71 -50.51 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.89 Total: -0.35 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.82 Total: -11.57 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.43 Total: -45.53 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.58 Total: -24.02 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 10.09 SS G_CDS: -1.47 Total: 8.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -41.80 -8.71 -50.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347433867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.087 kcal (2) G-P(sol) polarization free energy of solvation -41.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds