Wall clock time and date at job start Tue Mar 31 2020 22:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 C 1.34950 * 126.03771 * 124.99508 * 3 2 1 5 5 C 1.35314 * 107.74739 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.04262 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46644 * 334.96264 * 6 5 4 8 8 C 1.53235 * 109.47239 * 214.96939 * 6 5 4 9 9 S 1.81744 * 108.79836 * 182.34063 * 8 6 5 10 10 O 1.42104 * 109.47107 * 170.57563 * 9 8 6 11 11 C 1.81742 * 102.30552 * 54.54064 * 9 8 6 12 12 C 1.53753 * 108.75487 * 305.34632 * 11 9 8 13 13 N 1.46372 * 109.20830 * 57.82946 * 12 11 9 14 14 C 1.34779 * 119.64888 * 114.90927 * 13 12 11 15 15 O 1.21279 * 120.00299 * 174.19090 * 14 13 12 16 16 C 1.50700 * 119.99626 * 354.20043 * 14 13 12 17 17 C 1.52995 * 109.47033 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47363 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00552 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99758 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00280 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46752 * 90.00446 * 22 20 18 24 24 H 1.48501 * 109.46925 * 210.00157 * 22 20 18 25 25 H 1.48495 * 109.46972 * 330.00298 * 22 20 18 26 26 C 1.39876 * 107.91979 * 0.27069 * 5 4 3 27 27 N 1.30837 * 108.19987 * 359.54996 * 26 5 4 28 28 H 1.08999 * 109.47216 * 299.99403 * 1 2 3 29 29 H 1.09000 * 109.47328 * 59.99951 * 1 2 3 30 30 H 1.09004 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47609 * 239.99942 * 2 1 3 32 32 H 1.09000 * 109.47328 * 120.00049 * 2 1 3 33 33 H 1.08002 * 126.12948 * 359.96386 * 4 3 2 34 34 H 1.08998 * 109.58183 * 302.13139 * 8 6 5 35 35 H 1.08994 * 109.58229 * 62.54793 * 8 6 5 36 36 H 1.09003 * 109.58340 * 65.25447 * 11 9 8 37 37 H 1.09002 * 109.58190 * 185.52809 * 11 9 8 38 38 H 1.09006 * 109.61156 * 297.91282 * 12 11 9 39 39 H 1.08996 * 109.60874 * 177.75252 * 12 11 9 40 40 H 1.08995 * 109.47485 * 299.99670 * 16 14 13 41 41 H 1.09002 * 109.47430 * 59.99834 * 16 14 13 42 42 H 1.09001 * 109.47491 * 299.99791 * 17 16 14 43 43 H 1.09002 * 109.47604 * 60.00075 * 17 16 14 44 44 H 0.96994 * 120.00090 * 179.97438 * 21 20 18 45 45 H 1.07995 * 125.89915 * 179.73830 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0721 3.2134 0.5457 6 6 3.9550 4.1998 1.2658 7 1 4.0594 3.9002 2.3086 8 6 3.3252 5.5950 1.1958 9 16 4.4373 6.7810 2.0082 10 8 3.9793 8.1038 1.7639 11 6 6.0034 6.5098 1.1268 12 6 6.3638 5.0172 1.2070 13 7 5.2742 4.2272 0.6317 14 6 5.4891 3.5128 -0.4908 15 8 4.6255 2.7742 -0.9143 16 6 6.8028 3.6319 -1.2196 17 6 6.7873 2.7232 -2.4504 18 6 8.1007 2.8427 -3.1796 19 1 8.8697 3.5007 -2.8026 20 6 8.3211 2.1113 -4.3274 21 7 7.3849 1.3097 -4.7862 22 14 9.9495 2.2590 -5.2309 23 1 10.9020 1.2498 -4.7023 24 1 9.7338 2.0242 -6.6813 25 1 10.5068 3.6202 -5.0272 26 6 2.3082 3.4739 -0.5967 27 7 1.6808 2.3747 -0.9282 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3182 1.4129 1.7365 34 1 3.1851 5.8808 0.1534 35 1 2.3628 5.5874 1.7073 36 1 5.8914 6.8051 0.0835 37 1 6.7915 7.1022 1.5916 38 1 6.5090 4.7314 2.2488 39 1 7.2811 4.8319 0.6484 40 1 6.9524 4.6652 -1.5324 41 1 7.6145 3.3317 -0.5569 42 1 6.6379 1.6899 -2.1373 43 1 5.9756 3.0230 -3.1133 44 1 7.5397 0.7954 -5.5939 45 1 2.2491 4.4184 -1.1171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347433867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:10 Heat of formation + Delta-G solvation = -5.781526 kcal Electronic energy + Delta-G solvation = -28222.391380 eV Core-core repulsion = 24367.983760 eV Total energy + Delta-G solvation = -3854.407620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25859 -40.61270 -37.48076 -36.72876 -35.74246 -35.27927 -33.72196 -32.53711 -31.08307 -30.84915 -29.24584 -27.76056 -24.91995 -24.64264 -24.35343 -23.09941 -21.62110 -21.06591 -19.83680 -18.81550 -18.18999 -17.81938 -17.29157 -16.93688 -16.51852 -16.39643 -16.11267 -16.05689 -15.63149 -15.55609 -15.04558 -14.95955 -14.77302 -14.59660 -14.21262 -13.96082 -13.76190 -13.68667 -13.27480 -13.18791 -12.97864 -12.92405 -12.86165 -12.78275 -12.66926 -12.49503 -12.32508 -12.23680 -11.90558 -11.58902 -11.35321 -11.30324 -10.92363 -10.76831 -10.59590 -10.11172 -9.53994 -9.27036 -8.45614 -8.20657 -6.35086 0.69097 1.23598 1.38237 1.41093 1.51753 1.62055 1.81677 1.91392 1.93160 2.37979 2.51622 2.83229 3.12234 3.63551 3.77127 3.90715 4.09789 4.13891 4.15652 4.18895 4.24755 4.27133 4.38241 4.46920 4.53130 4.54672 4.58403 4.68144 4.78005 4.85284 4.91313 4.97634 5.10752 5.13464 5.17504 5.27584 5.36645 5.46460 5.63132 5.78313 5.84841 5.91084 6.16164 6.46677 6.51407 6.84901 7.00036 7.35470 7.51223 8.91436 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.004399 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.652966 B = 6363.680888 C = 9363.223846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 N -0.376 5.376 4 C 0.056 3.944 5 C -0.194 4.194 6 C 0.247 3.753 7 H 0.154 0.846 8 C -0.450 4.450 9 S 1.323 4.677 10 O -0.926 6.926 11 C -0.460 4.460 12 C 0.123 3.877 13 N -0.620 5.620 14 C 0.507 3.493 15 O -0.540 6.540 16 C -0.121 4.121 17 C 0.052 3.948 18 C -0.542 4.542 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.257 1.257 26 C 0.057 3.943 27 N -0.343 5.343 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.203 0.797 34 H 0.056 0.944 35 H 0.141 0.859 36 H 0.059 0.941 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.107 0.893 42 H -0.018 1.018 43 H -0.032 1.032 44 H 0.261 0.739 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 3.067 25.349 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 N -0.161 5.161 4 C -0.090 4.090 5 C -0.207 4.207 6 C 0.143 3.857 7 H 0.171 0.829 8 C -0.589 4.589 9 S 1.523 4.477 10 O -0.922 6.922 11 C -0.600 4.600 12 C 0.001 3.999 13 N -0.356 5.356 14 C 0.295 3.705 15 O -0.416 6.416 16 C -0.161 4.161 17 C 0.014 3.986 18 C -0.580 4.580 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.215 1.215 25 H -0.180 1.180 26 C -0.130 4.130 27 N -0.165 5.165 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.220 0.780 34 H 0.075 0.925 35 H 0.159 0.841 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.000 1.000 43 H -0.014 1.014 44 H 0.070 0.930 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.279 2.545 24.909 26.076 hybrid contribution 0.721 0.823 -3.659 3.819 sum -6.558 3.368 21.250 22.493 Atomic orbital electron populations 1.21954 0.93242 1.03696 1.02064 1.21861 0.96455 0.76930 1.04366 1.48549 1.36667 1.10112 1.20727 1.22510 0.95551 0.93619 0.97305 1.19583 1.05730 0.95693 0.99694 1.19075 0.79087 0.89361 0.98131 0.82885 1.28116 1.13471 1.08069 1.09200 1.69352 0.85389 0.83756 1.09240 1.92989 1.79518 1.35433 1.84256 1.28145 1.18188 1.03925 1.09711 1.21775 0.89355 0.85317 1.03480 1.48346 1.12527 1.48363 1.26317 1.21144 0.89364 0.79459 0.80488 1.90849 1.45464 1.38714 1.66527 1.21679 0.95328 1.01442 0.97665 1.18575 0.94672 0.93339 0.91975 1.21739 1.01216 1.25373 1.09658 0.90776 1.26122 1.00941 0.94747 0.98518 1.70191 1.35856 1.28475 1.23356 0.85365 0.78762 0.79369 0.77041 1.19224 1.21476 1.18043 1.23286 0.97154 0.96150 0.96365 1.77055 1.27053 0.97695 1.14654 0.91786 0.94147 0.88455 0.92068 0.85324 0.78049 0.92482 0.84098 0.92202 0.82842 0.83385 0.88429 0.89865 0.87507 0.99990 1.01370 0.93024 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.10 71.98 0.73 -2.16 16 2 C 0.12 2.77 7.23 86.38 0.62 3.40 16 3 N -0.38 -11.43 3.68 -348.07 -1.28 -12.71 16 4 C 0.06 1.42 10.53 83.54 0.88 2.30 16 5 C -0.19 -5.29 2.96 -20.14 -0.06 -5.35 16 6 C 0.25 4.37 3.16 44.35 0.14 4.51 16 7 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 8 C -0.45 -7.91 5.56 72.06 0.40 -7.51 16 9 S 1.32 17.70 13.71 -56.49 -0.77 16.93 16 10 O -0.93 -26.94 18.14 -148.98 -2.70 -29.64 16 11 C -0.46 -6.25 6.67 72.24 0.48 -5.77 16 12 C 0.12 1.50 6.16 86.66 0.53 2.03 16 13 N -0.62 -13.37 2.78 -800.70 -2.23 -15.60 16 14 C 0.51 17.79 7.58 87.66 0.66 18.45 16 15 O -0.54 -23.81 10.66 -3.03 -0.03 -23.84 16 16 C -0.12 -4.73 3.99 29.85 0.12 -4.61 16 17 C 0.05 2.90 4.26 29.85 0.13 3.03 16 18 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 19 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 20 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 21 N -0.94 -60.57 13.29 21.45 0.28 -60.29 16 22 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 C 0.06 2.03 9.36 85.24 0.80 2.83 16 27 N -0.34 -13.16 12.42 -57.02 -0.71 -13.87 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.13 1.81 8.07 -2.39 -0.02 1.79 16 33 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.06 1.46 7.21 -2.39 -0.02 1.44 16 35 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.15 0.15 8.14 -2.38 -0.02 0.13 16 39 H 0.10 1.39 5.77 -2.39 -0.01 1.37 16 40 H 0.08 3.07 8.08 -2.39 -0.02 3.05 16 41 H 0.11 3.50 7.42 -2.39 -0.02 3.48 16 42 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 43 H -0.03 -2.10 8.10 -2.39 -0.02 -2.12 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.15 5.32 7.37 -2.91 -0.02 5.30 16 Total: -1.00 -101.82 375.16 1.70 -100.12 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.98 Total: 11.70 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 6.13 Total: -19.56 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.93 Total: -102.48 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.73 Total: -53.48 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 17.70 SS G_CDS: -0.77 Total: 16.93 kcal Total: -101.82 1.70 -100.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347433867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.340 kcal (2) G-P(sol) polarization free energy of solvation -101.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds