Wall clock time and date at job start Tue Mar 31 2020 22:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.46782 * 2 1 4 4 C 1.35542 * 125.67745 * 260.87453 * 3 2 1 5 5 C 1.35453 * 108.86844 * 179.97438 * 4 3 2 6 6 C 1.39833 * 107.86974 * 0.02562 * 5 4 3 7 7 C 1.37651 * 125.68150 * 80.57583 * 3 2 1 8 8 C 1.46678 * 126.22843 * 0.02562 * 7 3 2 9 9 O 1.21694 * 120.00232 * 5.20134 * 8 7 3 10 10 N 1.34786 * 119.99877 * 185.20892 * 8 7 3 11 11 C 1.46493 * 120.00047 * 185.19523 * 10 8 7 12 12 H 1.08996 * 109.47483 * 324.99994 * 11 10 8 13 13 C 1.52998 * 109.47325 * 84.99590 * 11 10 8 14 14 C 1.52997 * 109.46967 * 204.99665 * 11 10 8 15 15 N 1.46502 * 109.47375 * 55.00192 * 14 11 10 16 16 C 1.34768 * 120.00199 * 179.97438 * 15 14 11 17 17 O 1.21278 * 120.00352 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99842 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46756 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99561 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00000 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99717 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00061 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99936 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47145 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46852 * 120.00159 * 24 22 20 27 27 H 1.48496 * 109.47563 * 240.00413 * 24 22 20 28 28 H 1.08992 * 109.47272 * 300.00191 * 1 2 3 29 29 H 1.08998 * 109.46825 * 60.00209 * 1 2 3 30 30 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46998 * 239.99598 * 2 1 3 32 32 H 1.08998 * 109.46825 * 119.99791 * 2 1 3 33 33 H 1.07998 * 125.56434 * 359.97168 * 4 3 2 34 34 H 1.08008 * 126.05954 * 179.97438 * 5 4 3 35 35 H 1.07996 * 126.45975 * 179.97438 * 6 5 4 36 36 H 0.96998 * 119.99627 * 5.19050 * 10 8 7 37 37 H 1.09004 * 109.47266 * 300.00627 * 13 11 10 38 38 H 1.09007 * 109.46954 * 60.00048 * 13 11 10 39 39 H 1.09000 * 109.47641 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47222 * 174.99834 * 14 11 10 41 41 H 1.08995 * 109.47279 * 294.99772 * 14 11 10 42 42 H 0.97001 * 119.99323 * 0.02562 * 15 14 11 43 43 H 1.08992 * 109.46933 * 299.99911 * 18 16 15 44 44 H 1.09000 * 109.47055 * 60.00463 * 18 16 15 45 45 H 0.97001 * 119.99444 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4464 2.0683 -1.0871 5 6 2.8194 3.3117 -0.7004 6 6 2.6192 3.4099 0.6800 7 6 2.1133 2.1992 1.1030 8 6 1.7467 1.8457 2.4786 9 8 1.4016 0.7092 2.7434 10 7 1.7920 2.7797 3.4493 11 6 1.5367 2.4022 4.8415 12 1 0.7815 1.6169 4.8725 13 6 2.8311 1.8902 5.4766 14 6 1.0359 3.6222 5.6171 15 7 -0.1355 4.1842 4.9401 16 6 -0.7498 5.2712 5.4473 17 8 -0.3328 5.7846 6.4638 18 6 -1.9545 5.8496 4.7505 19 16 -2.5470 7.2929 5.6682 20 6 -3.9171 7.7545 4.6609 21 1 -4.1545 7.1816 3.7767 22 6 -4.6918 8.8537 5.0045 23 7 -4.4027 9.5516 6.0824 24 14 -6.1438 9.3436 3.9362 25 1 -6.2550 8.4047 2.7911 26 1 -7.3905 9.2913 4.7414 27 1 -5.9407 10.7237 3.4272 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4840 1.6867 -2.0967 34 1 3.2041 4.0890 -1.3441 35 1 2.8191 4.2730 1.2977 36 1 1.9936 3.7018 3.2259 37 1 3.1879 1.0210 4.9240 38 1 3.5864 2.6755 5.4458 39 1 2.6413 1.6097 6.5127 40 1 0.7618 3.3223 6.6286 41 1 1.8247 4.3731 5.6620 42 1 -0.4693 3.7734 4.1273 43 1 -1.6799 6.1500 3.7394 44 1 -2.7432 5.0987 4.7049 45 1 -4.9439 10.3200 6.3222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354259094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:59 Heat of formation + Delta-G solvation = -57.656479 kcal Electronic energy + Delta-G solvation = -26466.071314 eV Core-core repulsion = 22609.414227 eV Total energy + Delta-G solvation = -3856.657087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37059 -40.88155 -40.07699 -37.43970 -35.28983 -34.66597 -34.57323 -32.60961 -30.90781 -30.22773 -29.79038 -27.74328 -26.84240 -24.63315 -24.06547 -22.19086 -21.75000 -21.32861 -20.62175 -19.83042 -18.86234 -17.81190 -17.59263 -17.35069 -16.88138 -16.59090 -16.38915 -16.26890 -15.84623 -15.67326 -15.06410 -15.00486 -14.83058 -14.58819 -14.52712 -14.21591 -13.86320 -13.65051 -13.45883 -13.26822 -13.22813 -13.16018 -13.10923 -12.94806 -12.91100 -12.83211 -12.59183 -12.14752 -12.08702 -11.70894 -11.15859 -11.07140 -10.99898 -10.28263 -10.26943 -10.16616 -9.68132 -9.15354 -8.66140 -8.35004 -6.12528 0.48478 1.26599 1.41247 1.46505 1.57690 1.59040 1.66134 1.84155 2.20471 2.27430 2.35255 2.41613 2.99292 3.31561 3.52315 3.78729 3.82127 3.94892 4.05169 4.10880 4.17198 4.23388 4.28769 4.37622 4.45124 4.48746 4.50518 4.57192 4.70092 4.75398 4.76402 4.86261 4.95136 5.15420 5.18774 5.22008 5.30043 5.36309 5.42162 5.42628 5.83009 6.05671 6.20024 6.34004 6.41075 6.46965 7.06728 7.13356 7.19303 8.74403 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.002459 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.896298 B =11386.190894 C =12836.102313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.415 5.415 4 C 0.022 3.978 5 C -0.224 4.224 6 C -0.141 4.141 7 C -0.085 4.085 8 C 0.591 3.409 9 O -0.575 6.575 10 N -0.708 5.708 11 C 0.145 3.855 12 H 0.089 0.911 13 C -0.155 4.155 14 C 0.115 3.885 15 N -0.714 5.714 16 C 0.537 3.463 17 O -0.560 6.560 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.199 0.801 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.412 0.588 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.411 0.589 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.537 -20.715 -15.729 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.088 5.088 4 C -0.113 4.113 5 C -0.248 4.248 6 C -0.167 4.167 7 C -0.198 4.198 8 C 0.380 3.620 9 O -0.457 6.457 10 N -0.361 5.361 11 C 0.041 3.959 12 H 0.107 0.893 13 C -0.214 4.214 14 C -0.008 4.008 15 N -0.368 5.368 16 C 0.323 3.677 17 O -0.437 6.437 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.198 1.198 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.216 0.784 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.249 0.751 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.247 0.753 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.840 -20.940 -13.674 30.151 hybrid contribution -1.391 0.250 -1.750 2.250 sum 15.450 -20.690 -15.424 30.078 Atomic orbital electron populations 1.22015 0.94102 1.03655 1.01738 1.22100 0.95898 0.79095 1.05311 1.44290 1.46352 1.11955 1.06192 1.22632 1.02722 0.93189 0.92795 1.21173 1.10063 0.98156 0.95382 1.21675 1.02554 0.95914 0.96607 1.20067 1.17247 0.93945 0.88562 1.17148 0.76402 0.84545 0.83882 1.90774 1.49746 1.21271 1.83872 1.45698 1.71863 1.12086 1.06404 1.21136 0.99001 0.96096 0.79697 0.89319 1.22068 0.95987 1.01637 1.01662 1.21752 0.87510 0.94888 0.96696 1.45738 1.31433 1.29598 1.30055 1.19961 0.83617 0.80087 0.84027 1.90701 1.66079 1.61155 1.25807 1.23383 0.98870 1.02155 1.03917 1.85523 1.37015 1.31661 1.37664 1.23228 1.15486 1.17371 1.13303 0.90104 1.26110 1.00984 0.95102 0.96910 1.70183 1.40317 1.18502 1.25697 0.84917 0.76739 0.78342 0.78023 1.18173 1.19961 1.19815 0.94276 0.91792 0.89334 0.86303 0.89641 0.78410 0.82423 0.82743 0.75106 0.92642 0.90959 0.89778 0.89831 0.90271 0.75306 0.87282 0.87694 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.15 71.98 0.73 -1.50 16 2 C 0.10 1.30 6.10 86.38 0.53 1.83 16 3 N -0.41 -6.86 2.76 -511.02 -1.41 -8.27 16 4 C 0.02 0.29 11.36 83.48 0.95 1.24 16 5 C -0.22 -3.26 10.81 22.01 0.24 -3.02 16 6 C -0.14 -2.34 10.35 22.57 0.23 -2.11 16 7 C -0.09 -1.65 6.88 40.35 0.28 -1.37 16 8 C 0.59 12.25 7.74 86.45 0.67 12.92 16 9 O -0.58 -14.74 13.83 -4.33 -0.06 -14.80 16 10 N -0.71 -11.53 4.49 -446.51 -2.01 -13.54 16 11 C 0.15 2.36 2.78 44.99 0.12 2.49 16 12 H 0.09 1.68 7.51 -2.39 -0.02 1.66 16 13 C -0.15 -2.14 9.48 71.98 0.68 -1.46 16 14 C 0.12 2.26 5.23 86.38 0.45 2.71 16 15 N -0.71 -17.19 5.39 -463.07 -2.49 -19.69 16 16 C 0.54 19.12 7.85 87.66 0.69 19.81 16 17 O -0.56 -24.85 15.86 -3.02 -0.05 -24.90 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 19 S -0.15 -8.03 20.57 -56.49 -1.16 -9.20 16 20 C -0.55 -31.16 9.50 67.95 0.65 -30.51 16 21 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 24 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 28 H 0.04 0.78 7.53 -2.39 -0.02 0.76 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.12 0.83 8.11 -2.39 -0.02 0.81 16 32 H 0.09 1.48 6.77 -2.39 -0.02 1.46 16 33 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.15 2.02 7.49 -2.91 -0.02 2.00 16 36 H 0.41 5.66 7.55 -92.71 -0.70 4.96 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.41 8.29 8.14 -92.71 -0.75 7.53 16 43 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 44 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.99 395.47 1.81 -78.18 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.44 Total: 24.52 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 7.12 Total: -2.48 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.63 Total: -96.97 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.11 Total: -39.70 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.20 kcal Total: -79.99 1.81 -78.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354259094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.520 kcal (2) G-P(sol) polarization free energy of solvation -79.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds