Wall clock time and date at job start Tue Mar 31 2020 23:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99927 * 2 1 4 4 C 1.34782 * 119.99600 * 180.02562 * 2 1 3 5 5 O 1.21542 * 120.00400 * 4.60764 * 4 2 1 6 6 C 1.47860 * 119.99387 * 184.60730 * 4 2 1 7 7 C 1.39706 * 120.07398 * 40.66811 * 6 4 2 8 8 C 1.38062 * 120.15145 * 179.97438 * 7 6 4 9 9 C 1.38099 * 120.29579 * 359.75996 * 8 7 6 10 10 C 1.39683 * 120.14246 * 0.51462 * 9 8 7 11 11 C 1.47812 * 120.07694 * 179.74186 * 10 9 8 12 12 O 1.21557 * 120.00234 * 179.72553 * 11 10 9 13 13 N 1.34772 * 120.00118 * 359.97438 * 11 10 9 14 14 C 1.39184 * 120.00296 * 175.28937 * 13 11 10 15 15 C 1.39697 * 119.57706 * 186.09153 * 14 13 11 16 16 C 1.38647 * 119.49407 * 179.72701 * 15 14 13 17 17 C 1.38346 * 118.66823 * 0.53085 * 16 15 14 18 18 C 1.40580 * 119.13667 * 359.73640 * 17 16 15 19 19 C 1.41333 * 119.78893 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99811 * 359.97298 * 19 18 17 21 21 C 1.40026 * 120.00297 * 179.97438 * 19 18 17 22 22 N 1.30743 * 119.99651 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47077 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46993 * 120.00202 * 23 21 19 26 26 H 1.48506 * 109.46757 * 239.99648 * 23 21 19 27 27 N 1.31916 * 119.57531 * 6.35961 * 14 13 11 28 28 C 1.39291 * 120.07143 * 220.68171 * 6 4 2 29 29 H 1.09007 * 109.47129 * 269.99724 * 1 2 3 30 30 H 1.08998 * 109.47290 * 29.99788 * 1 2 3 31 31 H 1.09000 * 109.47345 * 150.00328 * 1 2 3 32 32 H 1.09009 * 109.47040 * 185.78007 * 3 2 1 33 33 H 1.09002 * 109.47171 * 305.77686 * 3 2 1 34 34 H 1.09000 * 109.47294 * 65.78373 * 3 2 1 35 35 H 1.08000 * 119.92731 * 0.02562 * 7 6 4 36 36 H 1.07996 * 119.85623 * 180.02562 * 8 7 6 37 37 H 1.07995 * 119.93051 * 180.25849 * 9 8 7 38 38 H 0.96999 * 119.99860 * 355.29305 * 13 11 10 39 39 H 1.07999 * 120.25163 * 359.97438 * 15 14 13 40 40 H 1.07996 * 120.66481 * 180.24770 * 16 15 14 41 41 H 1.08004 * 120.43325 * 179.74929 * 17 16 15 42 42 H 0.97005 * 119.99783 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.14561 * 0.02562 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5341 -2.2181 -0.0855 6 6 3.6139 -1.1694 0.1023 7 6 4.2561 -0.2861 0.9736 8 6 5.6333 -0.2870 1.0713 9 6 6.3849 -1.1632 0.3133 10 6 5.7559 -2.0476 -0.5660 11 6 6.5621 -2.9809 -1.3808 12 8 6.0130 -3.7534 -2.1419 13 7 7.9057 -2.9788 -1.2762 14 6 8.6592 -3.9222 -1.9686 15 6 10.0379 -3.9946 -1.7557 16 6 10.7860 -4.9389 -2.4421 17 6 10.1398 -5.7788 -3.3315 18 6 8.7507 -5.6525 -3.5061 19 6 8.0765 -6.5038 -4.4108 20 1 8.6286 -7.2480 -4.9656 21 6 6.6928 -6.3823 -4.5879 22 7 6.0244 -5.4817 -3.9159 23 14 5.8019 -7.5070 -5.7841 24 1 6.7780 -8.4314 -6.4148 25 1 4.7754 -8.2931 -5.0536 26 1 5.1441 -6.6898 -6.8353 27 7 8.0630 -4.7329 -2.8215 28 6 4.3661 -2.0518 -0.6694 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 3.2647 1.0721 -0.1035 33 1 1.8588 1.8837 -0.8338 34 1 2.0141 1.7941 0.9372 35 1 3.6740 0.3985 1.5727 36 1 6.1248 0.3976 1.7466 37 1 7.4616 -1.1617 0.3975 38 1 8.3477 -2.3197 -0.7184 39 1 10.5169 -3.3229 -1.0587 40 1 11.8524 -5.0141 -2.2890 41 1 10.6954 -6.5219 -3.8843 42 1 5.0659 -5.3973 -4.0388 43 1 3.8745 -2.7362 -1.3450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411518960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:28 Heat of formation + Delta-G solvation = 36.096681 kcal Electronic energy + Delta-G solvation = -28360.815861 eV Core-core repulsion = 24372.780264 eV Total energy + Delta-G solvation = -3988.035596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63743 -39.51192 -38.24883 -37.11918 -35.81430 -34.21659 -33.09076 -31.79911 -31.13090 -30.29873 -29.04770 -28.15772 -26.61831 -25.61159 -24.06331 -23.17888 -21.81118 -21.16648 -20.36575 -19.21876 -18.13196 -17.25849 -16.82011 -16.45432 -16.16693 -15.85810 -15.79262 -14.82094 -14.51697 -14.39938 -14.35844 -14.25338 -13.67751 -13.64685 -13.48820 -13.27504 -13.01776 -12.83740 -12.74955 -12.63517 -12.29319 -12.01754 -11.86813 -11.75677 -11.40545 -11.15388 -10.93098 -10.63428 -10.47399 -10.11197 -9.91037 -9.73214 -9.16962 -9.13746 -9.05225 -8.96114 -8.90933 -7.97616 -7.24725 -6.98925 -6.13770 -4.39566 0.66279 1.07548 2.49213 2.69659 2.82188 3.08075 3.20369 3.23670 3.27072 3.41817 3.70965 4.08310 4.18497 4.24143 4.59514 4.71312 4.81398 4.93714 4.94197 4.97584 5.08330 5.12184 5.25474 5.32176 5.36352 5.50611 5.57007 5.79865 6.03147 6.06916 6.10534 6.12329 6.19908 6.26423 6.47347 6.64528 6.66341 6.83440 6.84389 7.03164 7.23978 7.53921 7.60516 7.80435 7.93083 8.03411 8.18584 8.43914 8.73279 9.04303 9.17916 10.23204 10.48760 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003267 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.569708 B = 8569.427818 C =10648.182247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.063 3.937 4 C 0.561 3.439 5 O -0.525 6.525 6 C -0.141 4.141 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.071 4.071 10 C -0.117 4.117 11 C 0.510 3.490 12 O -0.396 6.396 13 N -0.660 5.660 14 C 0.372 3.628 15 C -0.356 4.356 16 C -0.036 4.036 17 C -0.304 4.304 18 C 0.270 3.730 19 C -0.423 4.423 20 H 0.083 0.917 21 C 0.058 3.942 22 N -0.656 5.656 23 Si 0.896 3.104 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.275 1.275 27 N -0.473 5.473 28 C -0.011 4.011 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.398 0.602 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.273 0.727 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 16.742 10.322 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.354 5.354 3 C -0.079 4.079 4 C 0.350 3.650 5 O -0.401 6.401 6 C -0.144 4.144 7 C -0.099 4.099 8 C -0.151 4.151 9 C -0.090 4.090 10 C -0.121 4.121 11 C 0.292 3.708 12 O -0.260 6.260 13 N -0.307 5.307 14 C 0.133 3.867 15 C -0.382 4.382 16 C -0.060 4.060 17 C -0.327 4.327 18 C 0.145 3.855 19 C -0.453 4.453 20 H 0.101 0.899 21 C -0.172 4.172 22 N -0.275 5.275 23 Si 0.720 3.280 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.192 5.192 28 C -0.030 4.030 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.401 15.732 9.592 20.250 hybrid contribution 0.828 0.081 0.100 0.838 sum -7.574 15.813 9.693 20.034 Atomic orbital electron populations 1.21646 0.78752 1.03429 1.01895 1.47604 1.07172 1.06275 1.74362 1.22241 0.98820 0.85011 1.01875 1.18423 0.87174 0.83393 0.76049 1.90816 1.69690 1.31006 1.48610 1.19726 0.92665 1.00206 1.01804 1.21459 0.94987 0.96542 0.96901 1.21004 0.93429 1.00083 1.00561 1.21578 1.00276 0.93476 0.93694 1.20377 0.94133 0.98519 0.99061 1.18406 0.82599 0.85247 0.84566 1.91250 1.69554 1.34003 1.31167 1.43244 1.06129 1.33151 1.48224 1.18559 0.86875 0.89767 0.91518 1.20468 0.93069 1.10426 1.14269 1.20556 0.97101 0.93892 0.94485 1.21627 0.96413 1.06603 1.08057 1.18392 0.87904 0.89238 0.89980 1.19630 0.92393 1.14380 1.18917 0.89855 1.26179 0.98376 0.96023 0.96573 1.70307 1.08128 1.22286 1.26762 0.86455 0.79979 0.80792 0.80743 1.18592 1.19976 1.20039 1.68690 1.35316 1.06762 1.08463 1.21335 0.92278 0.94161 0.95239 0.92651 0.91129 0.90227 0.88921 0.91748 0.92038 0.85063 0.84899 0.85162 0.76766 0.89078 0.88577 0.88520 0.91537 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.52 59.85 0.63 1.33 16 2 N -0.62 -6.28 3.27 -190.64 -0.62 -6.91 16 3 C 0.06 0.41 9.15 59.84 0.55 0.96 16 4 C 0.56 7.85 7.30 -12.32 -0.09 7.76 16 5 O -0.53 -9.48 16.49 5.33 0.09 -9.40 16 6 C -0.14 -1.85 5.12 -105.02 -0.54 -2.39 16 7 C -0.08 -0.76 7.33 -39.10 -0.29 -1.05 16 8 C -0.13 -1.18 10.02 -39.70 -0.40 -1.58 16 9 C -0.07 -0.81 9.54 -39.09 -0.37 -1.19 16 10 C -0.12 -1.85 5.87 -105.02 -0.62 -2.46 16 11 C 0.51 10.55 7.73 -12.35 -0.10 10.45 16 12 O -0.40 -10.17 12.11 5.32 0.06 -10.10 16 13 N -0.66 -13.00 5.33 -12.27 -0.07 -13.07 16 14 C 0.37 9.07 7.42 -155.04 -1.15 7.92 16 15 C -0.36 -7.95 9.96 -38.89 -0.39 -8.34 16 16 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 17 C -0.30 -7.67 9.83 -38.66 -0.38 -8.05 16 18 C 0.27 7.64 6.55 -85.00 -0.56 7.08 16 19 C -0.42 -11.73 9.14 -37.74 -0.34 -12.08 16 20 H 0.08 2.17 7.85 -52.49 -0.41 1.75 16 21 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16 22 N -0.66 -18.50 9.00 55.55 0.50 -18.00 16 23 Si 0.90 19.64 29.56 -169.99 -5.02 14.62 16 24 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 N -0.47 -13.39 5.74 -10.27 -0.06 -13.45 16 28 C -0.01 -0.17 9.19 -38.77 -0.36 -0.53 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.81 7.36 -51.93 -0.38 0.42 16 32 H 0.09 0.63 4.50 -51.92 -0.23 0.40 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.27 8.12 -51.93 -0.42 -0.16 16 35 H 0.13 0.88 6.53 -52.49 -0.34 0.54 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.18 6.40 -52.49 -0.34 0.84 16 38 H 0.40 5.90 6.73 -40.82 -0.27 5.62 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 43 H 0.15 2.70 7.65 -52.48 -0.40 2.30 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -36.30 363.12 -9.43 -45.74 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.89 Total: 7.04 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -4.89 Total: -1.94 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.25 Total: -51.43 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.15 Total: -19.50 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.30 -9.43 -45.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411518960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.833 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds