Wall clock time and date at job start Tue Mar 31 2020 23:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 119.99927 * 2 1 4 4 C 1.34782 * 119.99600 * 180.02562 * 2 1 3 5 5 O 1.21542 * 120.00400 * 4.60764 * 4 2 1 6 6 C 1.47860 * 119.99387 * 184.60730 * 4 2 1 7 7 C 1.39706 * 120.07398 * 40.66811 * 6 4 2 8 8 C 1.38062 * 120.15145 * 179.97438 * 7 6 4 9 9 C 1.38099 * 120.29579 * 359.75996 * 8 7 6 10 10 C 1.39683 * 120.14246 * 0.51462 * 9 8 7 11 11 C 1.47812 * 120.07694 * 179.74186 * 10 9 8 12 12 O 1.21557 * 120.00234 * 179.72553 * 11 10 9 13 13 N 1.34772 * 120.00118 * 359.97438 * 11 10 9 14 14 C 1.39184 * 120.00296 * 175.28937 * 13 11 10 15 15 C 1.39697 * 119.57706 * 186.09153 * 14 13 11 16 16 C 1.38647 * 119.49407 * 179.72701 * 15 14 13 17 17 C 1.38346 * 118.66823 * 0.53085 * 16 15 14 18 18 C 1.40580 * 119.13667 * 359.73640 * 17 16 15 19 19 C 1.41333 * 119.78893 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99811 * 359.97298 * 19 18 17 21 21 C 1.40026 * 120.00297 * 179.97438 * 19 18 17 22 22 N 1.30743 * 119.99651 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47077 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46993 * 120.00202 * 23 21 19 26 26 H 1.48506 * 109.46757 * 239.99648 * 23 21 19 27 27 N 1.31916 * 119.57531 * 6.35961 * 14 13 11 28 28 C 1.39291 * 120.07143 * 220.68171 * 6 4 2 29 29 H 1.09007 * 109.47129 * 269.99724 * 1 2 3 30 30 H 1.08998 * 109.47290 * 29.99788 * 1 2 3 31 31 H 1.09000 * 109.47345 * 150.00328 * 1 2 3 32 32 H 1.09009 * 109.47040 * 185.78007 * 3 2 1 33 33 H 1.09002 * 109.47171 * 305.77686 * 3 2 1 34 34 H 1.09000 * 109.47294 * 65.78373 * 3 2 1 35 35 H 1.08000 * 119.92731 * 0.02562 * 7 6 4 36 36 H 1.07996 * 119.85623 * 180.02562 * 8 7 6 37 37 H 1.07995 * 119.93051 * 180.25849 * 9 8 7 38 38 H 0.96999 * 119.99860 * 355.29305 * 13 11 10 39 39 H 1.07999 * 120.25163 * 359.97438 * 15 14 13 40 40 H 1.07996 * 120.66481 * 180.24770 * 16 15 14 41 41 H 1.08004 * 120.43325 * 179.74929 * 17 16 15 42 42 H 0.97005 * 119.99783 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.14561 * 0.02562 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5341 -2.2181 -0.0855 6 6 3.6139 -1.1694 0.1023 7 6 4.2561 -0.2861 0.9736 8 6 5.6333 -0.2870 1.0713 9 6 6.3849 -1.1632 0.3133 10 6 5.7559 -2.0476 -0.5660 11 6 6.5621 -2.9809 -1.3808 12 8 6.0130 -3.7534 -2.1419 13 7 7.9057 -2.9788 -1.2762 14 6 8.6592 -3.9222 -1.9686 15 6 10.0379 -3.9946 -1.7557 16 6 10.7860 -4.9389 -2.4421 17 6 10.1398 -5.7788 -3.3315 18 6 8.7507 -5.6525 -3.5061 19 6 8.0765 -6.5038 -4.4108 20 1 8.6286 -7.2480 -4.9656 21 6 6.6928 -6.3823 -4.5879 22 7 6.0244 -5.4817 -3.9159 23 14 5.8019 -7.5070 -5.7841 24 1 6.7780 -8.4314 -6.4148 25 1 4.7754 -8.2931 -5.0536 26 1 5.1441 -6.6898 -6.8353 27 7 8.0630 -4.7329 -2.8215 28 6 4.3661 -2.0518 -0.6694 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 3.2647 1.0721 -0.1035 33 1 1.8588 1.8837 -0.8338 34 1 2.0141 1.7941 0.9372 35 1 3.6740 0.3985 1.5727 36 1 6.1248 0.3976 1.7466 37 1 7.4616 -1.1617 0.3975 38 1 8.3477 -2.3197 -0.7184 39 1 10.5169 -3.3229 -1.0587 40 1 11.8524 -5.0141 -2.2890 41 1 10.6954 -6.5219 -3.8843 42 1 5.0659 -5.3973 -4.0388 43 1 3.8745 -2.7362 -1.3450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411518960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:27 Heat of formation + Delta-G solvation = 11.571609 kcal Electronic energy + Delta-G solvation = -28361.879348 eV Core-core repulsion = 24372.780264 eV Total energy + Delta-G solvation = -3989.099083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70991 -40.98747 -39.70381 -38.61409 -36.73706 -36.02795 -34.94871 -32.91545 -32.24311 -32.10335 -30.80634 -28.88591 -27.56625 -27.39056 -25.39650 -24.15819 -23.49672 -22.83745 -21.60754 -20.56131 -19.70782 -18.67361 -18.05527 -17.79051 -17.15891 -17.02337 -16.85708 -16.47118 -16.27039 -15.96817 -15.66511 -15.50509 -15.17183 -14.80735 -14.66041 -14.48753 -14.42798 -14.10221 -13.74331 -13.64354 -13.46988 -13.29671 -12.99352 -12.92200 -12.74281 -12.65919 -12.55841 -12.42161 -12.32499 -11.76820 -11.57650 -11.17693 -10.91560 -10.79904 -10.12881 -9.98599 -9.91435 -9.74735 -9.13944 -8.85451 -8.08014 -6.44286 -0.31933 0.02950 0.92715 1.24829 1.35891 1.47618 1.51286 1.51921 1.87519 2.17460 2.22735 2.23876 2.81579 3.02380 3.37454 3.64366 3.84361 3.99739 4.04420 4.08455 4.26897 4.30080 4.33775 4.41414 4.49672 4.61610 4.72382 4.74016 4.85583 4.86167 4.89067 4.91832 4.95549 5.04691 5.16938 5.22224 5.26736 5.27293 5.42074 5.66982 5.74208 5.83213 5.91669 6.12328 6.17880 6.35438 6.69141 6.81554 6.95778 7.05023 7.58982 8.32477 8.53401 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003267 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.569708 B = 8569.427818 C =10648.182247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.055 3.945 4 C 0.550 3.450 5 O -0.586 6.586 6 C -0.149 4.149 7 C -0.054 4.054 8 C -0.110 4.110 9 C -0.059 4.059 10 C -0.140 4.140 11 C 0.502 3.498 12 O -0.460 6.460 13 N -0.645 5.645 14 C 0.346 3.654 15 C -0.339 4.339 16 C -0.034 4.034 17 C -0.327 4.327 18 C 0.235 3.765 19 C -0.465 4.465 20 H 0.088 0.912 21 C 0.011 3.989 22 N -0.695 5.695 23 Si 0.973 3.027 24 H -0.249 1.249 25 H -0.274 1.274 26 H -0.271 1.271 27 N -0.512 5.512 28 C -0.038 4.038 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.174 0.826 36 H 0.189 0.811 37 H 0.160 0.840 38 H 0.421 0.579 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.267 0.733 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 20.773 13.261 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C -0.086 4.086 4 C 0.339 3.661 5 O -0.467 6.467 6 C -0.152 4.152 7 C -0.072 4.072 8 C -0.127 4.127 9 C -0.077 4.077 10 C -0.143 4.143 11 C 0.287 3.713 12 O -0.328 6.328 13 N -0.295 5.295 14 C 0.108 3.892 15 C -0.364 4.364 16 C -0.058 4.058 17 C -0.350 4.350 18 C 0.110 3.890 19 C -0.496 4.496 20 H 0.106 0.894 21 C -0.214 4.214 22 N -0.315 5.315 23 Si 0.794 3.206 24 H -0.172 1.172 25 H -0.200 1.200 26 H -0.196 1.196 27 N -0.231 5.231 28 C -0.058 4.058 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.191 0.809 36 H 0.206 0.794 37 H 0.178 0.822 38 H 0.261 0.739 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.812 19.867 12.576 24.479 hybrid contribution 0.438 -0.923 -0.627 1.199 sum -6.373 18.943 11.949 23.286 Atomic orbital electron populations 1.21816 0.77787 1.03635 1.02976 1.47781 1.08062 1.06423 1.72103 1.22558 0.98286 0.83289 1.04490 1.18736 0.87720 0.83804 0.75849 1.90779 1.70784 1.33385 1.51780 1.19713 0.92176 1.00798 1.02554 1.21944 0.95847 0.94819 0.94635 1.21580 0.92801 0.99017 0.99347 1.21908 1.01919 0.91987 0.91907 1.19918 0.93169 1.00061 1.01179 1.19248 0.82929 0.85098 0.84051 1.91236 1.70644 1.36844 1.34037 1.43153 1.05900 1.32707 1.47741 1.19125 0.88538 0.90139 0.91434 1.20997 0.92081 1.09932 1.13436 1.21066 0.99296 0.92575 0.92874 1.21819 0.95562 1.08036 1.09568 1.18895 0.89605 0.89877 0.90662 1.19933 0.93424 1.15701 1.20533 0.89440 1.27059 0.98866 0.97374 0.98123 1.70539 1.07758 1.24408 1.28754 0.85298 0.78496 0.78646 0.78149 1.17185 1.19972 1.19600 1.68647 1.36937 1.07774 1.09786 1.21033 0.93001 0.95285 0.96480 0.91108 0.87830 0.93096 0.89109 0.90240 0.88459 0.80896 0.79412 0.82248 0.73917 0.84407 0.84157 0.87646 0.92250 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.52 127.77 1.34 2.57 16 2 N -0.61 -11.50 3.27 -875.33 -2.87 -14.36 16 3 C 0.05 0.48 9.15 127.77 1.17 1.65 16 4 C 0.55 15.89 7.30 86.79 0.63 16.52 16 5 O -0.59 -23.18 16.49 -3.85 -0.06 -23.24 16 6 C -0.15 -3.91 5.12 -20.12 -0.10 -4.01 16 7 C -0.05 -0.80 7.33 22.58 0.17 -0.64 16 8 C -0.11 -1.32 10.02 22.19 0.22 -1.10 16 9 C -0.06 -1.14 9.54 22.59 0.22 -0.92 16 10 C -0.14 -4.52 5.87 -20.13 -0.12 -4.64 16 11 C 0.50 21.98 7.73 86.78 0.67 22.65 16 12 O -0.46 -25.99 12.11 -3.89 -0.05 -26.04 16 13 N -0.65 -25.45 5.33 -311.01 -1.66 -27.11 16 14 C 0.35 17.09 7.42 133.28 0.99 18.08 16 15 C -0.34 -14.35 9.96 22.72 0.23 -14.12 16 16 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 17 C -0.33 -16.75 9.83 22.87 0.22 -16.53 16 18 C 0.24 13.99 6.55 40.19 0.26 14.26 16 19 C -0.46 -27.43 9.14 23.47 0.21 -27.22 16 20 H 0.09 4.82 7.85 -2.91 -0.02 4.79 16 21 C 0.01 0.61 5.50 85.29 0.47 1.08 16 22 N -0.70 -42.67 9.00 21.84 0.20 -42.47 16 23 Si 0.97 43.15 29.56 68.60 2.03 45.17 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 N -0.51 -30.51 5.74 -186.40 -1.07 -31.58 16 28 C -0.04 -1.32 9.19 22.79 0.21 -1.12 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.05 1.10 7.36 -2.39 -0.02 1.08 16 32 H 0.09 0.84 4.50 -2.38 -0.01 0.83 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.25 8.12 -2.39 -0.02 0.23 16 35 H 0.17 1.18 6.53 -2.91 -0.02 1.16 16 36 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.16 2.09 6.40 -2.91 -0.02 2.07 16 38 H 0.42 11.51 6.73 -92.71 -0.62 10.89 16 39 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 42 H 0.27 15.69 8.29 -92.70 -0.77 14.92 16 43 H 0.10 4.22 7.65 -2.91 -0.02 4.20 16 Total: -1.00 -93.15 363.12 3.99 -89.16 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.45 Total: 25.18 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 7.02 Total: 5.29 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -5.39 Total: -115.53 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.11 Total: -49.28 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -93.15 3.99 -89.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411518960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.735 kcal (2) G-P(sol) polarization free energy of solvation -93.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds