Wall clock time and date at job start Tue Mar 31 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00126 * 2 1 4 4 N 1.34775 * 119.99747 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00301 * 5.75283 * 4 2 1 6 6 C 1.39559 * 119.99859 * 185.75144 * 4 2 1 7 7 C 1.39039 * 119.61877 * 15.39787 * 6 4 2 8 8 C 1.38281 * 119.17922 * 179.97438 * 7 6 4 9 9 C 1.39413 * 118.43249 * 0.02562 * 8 7 6 10 10 N 1.40039 * 120.41367 * 180.02562 * 9 8 7 11 11 C 1.34770 * 119.99961 * 29.23666 * 10 9 8 12 12 O 1.21565 * 120.00069 * 5.49678 * 11 10 9 13 13 C 1.47856 * 120.00158 * 185.48979 * 11 10 9 14 14 C 1.39939 * 120.02285 * 359.72467 * 13 11 10 15 15 C 1.38325 * 120.35479 * 179.76023 * 14 13 11 16 16 C 1.37762 * 120.41384 * 0.51823 * 15 14 13 17 17 C 1.40747 * 120.04145 * 359.74394 * 16 15 14 18 18 C 1.41440 * 120.17865 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00228 * 149.54162 * 18 17 16 20 20 C 1.39934 * 119.99954 * 329.54894 * 18 17 16 21 21 N 1.30821 * 120.00218 * 168.21714 * 20 18 17 22 22 Si 1.86810 * 119.99754 * 348.21292 * 20 18 17 23 23 H 1.48493 * 109.47082 * 93.23944 * 22 20 18 24 24 H 1.48501 * 109.46970 * 213.24308 * 22 20 18 25 25 H 1.48500 * 109.46837 * 333.23593 * 22 20 18 26 26 C 1.39004 * 120.03215 * 180.02562 * 13 11 10 27 27 C 1.38710 * 119.16927 * 359.97438 * 9 8 7 28 28 N 1.31906 * 120.74733 * 0.02562 * 27 9 8 29 29 H 1.09006 * 109.47270 * 274.27702 * 1 2 3 30 30 H 1.09003 * 109.47514 * 34.27076 * 1 2 3 31 31 H 1.08995 * 109.47767 * 154.27701 * 1 2 3 32 32 H 1.09001 * 109.47130 * 275.29780 * 5 4 2 33 33 H 1.08996 * 109.46728 * 35.29199 * 5 4 2 34 34 H 1.08996 * 109.46970 * 155.29680 * 5 4 2 35 35 H 1.08002 * 120.40845 * 0.25470 * 7 6 4 36 36 H 1.07995 * 120.78623 * 180.02562 * 8 7 6 37 37 H 0.97000 * 119.99680 * 209.24096 * 10 9 8 38 38 H 1.07996 * 119.82195 * 0.02838 * 14 13 11 39 39 H 1.07998 * 119.79694 * 180.26241 * 15 14 13 40 40 H 1.07997 * 119.97960 * 179.75994 * 16 15 14 41 41 H 0.97005 * 120.00253 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.20098 * 359.95801 * 26 13 11 43 43 H 1.08002 * 119.62644 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4538 -2.4327 -0.1283 6 6 3.5711 -1.1703 0.1206 7 6 4.2253 -0.0243 0.5585 8 6 5.6031 -0.0376 0.6757 9 6 6.2859 -1.2079 0.3472 10 7 7.6812 -1.2675 0.4512 11 6 8.3220 -0.5095 1.3628 12 8 7.6848 0.1498 2.1610 13 6 9.7999 -0.4799 1.3922 14 6 10.5339 -1.2432 0.4774 15 6 11.9168 -1.2168 0.4956 16 6 12.5875 -0.4475 1.4208 17 6 11.8664 0.3227 2.3524 18 6 12.5521 1.1140 3.3033 19 1 12.1074 2.0290 3.6657 20 6 13.8067 0.7114 3.7743 21 7 14.5420 1.5413 4.4686 22 14 14.4317 -1.0114 3.4118 23 1 15.2551 -0.9894 2.1762 24 1 15.2588 -1.4875 4.5495 25 1 13.2779 -1.9266 3.2216 26 6 10.4615 0.3013 2.3326 27 6 5.5659 -2.3127 -0.0828 28 7 4.2515 -2.2639 -0.1826 29 1 -0.3634 0.0766 1.0248 30 1 -0.3634 0.8492 -0.5787 31 1 -0.3634 -0.9257 -0.4460 32 1 1.1027 -2.7508 0.8534 33 1 0.6005 -2.2960 -0.7925 34 1 2.1173 -3.1928 -0.5406 35 1 3.6639 0.8639 0.8083 36 1 6.1376 0.8378 1.0136 37 1 8.1863 -1.8543 -0.1331 38 1 10.0179 -1.8528 -0.2495 39 1 12.4742 -1.8062 -0.2173 40 1 13.6674 -0.4351 1.4312 41 1 15.4115 1.2621 4.7955 42 1 9.8992 0.8888 3.0433 43 1 6.0874 -3.2230 -0.3395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412194591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:32 Heat of formation + Delta-G solvation = 14.521239 kcal Electronic energy + Delta-G solvation = -27507.160050 eV Core-core repulsion = 23518.188872 eV Total energy + Delta-G solvation = -3988.971178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.33838 -40.21642 -38.91291 -37.49443 -36.12241 -34.65878 -33.74981 -32.26852 -31.37638 -30.54554 -30.12884 -28.71247 -27.27417 -25.36560 -24.20187 -23.55680 -22.59409 -20.82669 -20.43806 -20.00908 -18.51424 -18.00794 -17.39613 -16.95799 -16.50660 -16.37774 -15.80864 -15.54991 -15.02362 -14.76049 -14.62878 -14.26955 -14.13087 -13.82329 -13.74717 -13.53886 -13.29348 -13.12317 -12.98736 -12.82822 -12.80374 -12.62086 -12.18366 -12.15150 -11.75724 -11.17955 -11.11036 -10.82693 -10.64134 -10.38173 -10.04741 -10.00929 -9.82441 -9.74889 -9.62583 -9.30820 -9.06705 -8.03474 -7.89142 -7.74554 -7.04124 -4.63916 0.91399 1.24742 1.76195 2.20444 2.32014 2.42449 2.99606 3.12931 3.19097 3.19532 3.38547 3.82743 3.86843 4.06887 4.38367 4.40759 4.58131 4.70668 4.83562 4.89675 4.94797 5.03587 5.12000 5.22008 5.26588 5.33706 5.47803 5.61927 5.72689 5.76121 5.90080 6.02119 6.22448 6.25166 6.49603 6.54213 6.56421 6.69315 6.84247 6.89482 7.09567 7.26544 7.36764 7.52314 7.61151 7.65313 7.84690 7.85104 8.20514 8.38962 8.43101 8.63308 9.97859 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002081 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.432781 B =13454.240458 C =14065.461675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.519 6.519 4 N -0.544 5.544 5 C 0.072 3.928 6 C 0.319 3.681 7 C -0.165 4.165 8 C -0.065 4.065 9 C 0.093 3.907 10 N -0.668 5.668 11 C 0.565 3.435 12 O -0.525 6.525 13 C -0.110 4.110 14 C -0.216 4.216 15 C -0.081 4.081 16 C -0.219 4.219 17 C 0.080 3.920 18 C -0.437 4.437 19 H 0.095 0.905 20 C 0.079 3.921 21 N -0.805 5.805 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.242 1.242 26 C -0.130 4.130 27 C 0.092 3.908 28 N -0.493 5.493 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.155 0.845 37 H 0.413 0.587 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.117 0.883 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.741 -9.704 -9.953 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.394 6.394 4 N -0.271 5.271 5 C -0.070 4.070 6 C 0.090 3.910 7 C -0.187 4.187 8 C -0.093 4.093 9 C -0.006 4.006 10 N -0.314 5.314 11 C 0.357 3.643 12 O -0.402 6.402 13 C -0.114 4.114 14 C -0.236 4.236 15 C -0.100 4.100 16 C -0.238 4.238 17 C 0.077 3.923 18 C -0.465 4.465 19 H 0.113 0.887 20 C -0.140 4.140 21 N -0.429 5.429 22 Si 0.742 3.258 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.165 1.165 26 C -0.150 4.150 27 C -0.068 4.068 28 N -0.207 5.207 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -22.124 -9.250 -9.479 25.785 hybrid contribution 1.255 -0.481 -0.144 1.352 sum -20.868 -9.731 -9.623 24.956 Atomic orbital electron populations 1.21989 0.90105 1.05422 1.05533 1.21043 0.91072 0.82294 0.75349 1.90611 1.69631 1.31382 1.47813 1.45319 1.03933 1.08511 1.69351 1.21995 0.97298 0.85329 1.02368 1.18276 0.83979 0.91324 0.97446 1.22643 0.94666 1.00520 1.00857 1.21768 0.93702 0.97631 0.96225 1.18835 0.84559 0.94943 1.02260 1.43516 1.04093 1.45483 1.38311 1.18986 0.88822 0.77805 0.78696 1.90712 1.68262 1.42407 1.38808 1.19283 0.89181 1.02712 1.00186 1.20378 0.93976 1.06247 1.02959 1.20499 0.93756 0.97959 0.97755 1.21182 0.98478 1.05165 0.99023 1.17717 0.91392 0.91166 0.92010 1.19560 1.00205 1.07471 1.19310 0.88735 1.26194 0.95246 0.99779 0.92752 1.69638 1.10195 1.36161 1.26930 0.86273 0.79730 0.82614 0.77177 1.19617 1.21843 1.16495 1.21285 0.93892 1.01037 0.98822 1.22104 0.87982 0.96573 1.00176 1.66845 1.08589 1.27151 1.18106 0.88094 0.88317 0.89498 0.91748 0.90462 0.88574 0.81080 0.82773 0.74893 0.88466 0.88060 0.87847 0.90205 0.86451 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.88 36.00 0.36 -0.45 16 2 C 0.51 5.12 7.64 -10.99 -0.08 5.04 16 3 O -0.52 -7.20 13.78 5.55 0.08 -7.13 16 4 N -0.54 -5.58 3.09 -122.73 -0.38 -5.96 16 5 C 0.07 0.44 9.92 59.85 0.59 1.04 16 6 C 0.32 4.28 7.24 -154.58 -1.12 3.16 16 7 C -0.16 -2.46 8.86 -39.27 -0.35 -2.80 16 8 C -0.07 -1.03 8.78 -39.13 -0.34 -1.38 16 9 C 0.09 1.34 6.37 -83.50 -0.53 0.81 16 10 N -0.67 -9.77 5.31 -10.58 -0.06 -9.83 16 11 C 0.56 10.60 7.56 -12.33 -0.09 10.51 16 12 O -0.53 -11.23 13.80 5.31 0.07 -11.16 16 13 C -0.11 -2.24 5.87 -105.04 -0.62 -2.86 16 14 C -0.22 -3.93 9.55 -38.91 -0.37 -4.30 16 15 C -0.08 -1.58 10.01 -39.72 -0.40 -1.98 16 16 C -0.22 -4.93 6.94 -38.81 -0.27 -5.20 16 17 C 0.08 1.96 5.16 -106.87 -0.55 1.41 16 18 C -0.44 -11.51 9.61 -37.73 -0.36 -11.87 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.08 2.02 5.47 -17.35 -0.09 1.93 16 21 N -0.81 -20.97 13.93 55.55 0.77 -20.19 16 22 Si 0.91 19.96 24.37 -169.99 -4.14 15.82 16 23 H -0.27 -5.64 6.71 56.52 0.38 -5.26 16 24 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.24 -5.35 6.57 56.52 0.37 -4.98 16 26 C -0.13 -3.02 9.34 -38.44 -0.36 -3.38 16 27 C 0.09 1.14 11.10 -17.35 -0.19 0.94 16 28 N -0.49 -6.35 9.03 -12.18 -0.11 -6.46 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.20 5.77 -51.93 -0.30 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.25 6.19 -51.93 -0.32 -0.07 16 34 H 0.10 0.69 7.10 -51.93 -0.37 0.32 16 35 H 0.17 2.64 5.13 -53.07 -0.27 2.37 16 36 H 0.15 2.68 6.22 -52.49 -0.33 2.35 16 37 H 0.41 4.80 6.84 -40.82 -0.28 4.52 16 38 H 0.10 1.38 6.39 -52.49 -0.34 1.04 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.10 2.31 4.28 -52.49 -0.22 2.09 16 41 H 0.29 6.75 8.30 -40.82 -0.34 6.42 16 42 H 0.12 2.77 7.64 -52.48 -0.40 2.37 16 43 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -31.60 355.44 -7.75 -39.34 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.55 Total: 9.60 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -4.78 Total: -9.39 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.23 Total: -42.45 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.15 Total: -18.29 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.14 Total: 15.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.60 -7.75 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412194591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.866 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds