Wall clock time and date at job start Tue Mar 31 2020 22:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00126 * 2 1 4 4 N 1.34775 * 119.99747 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00301 * 5.75283 * 4 2 1 6 6 C 1.39559 * 119.99859 * 185.75144 * 4 2 1 7 7 C 1.39039 * 119.61877 * 15.39787 * 6 4 2 8 8 C 1.38281 * 119.17922 * 179.97438 * 7 6 4 9 9 C 1.39413 * 118.43249 * 0.02562 * 8 7 6 10 10 N 1.40039 * 120.41367 * 180.02562 * 9 8 7 11 11 C 1.34770 * 119.99961 * 29.23666 * 10 9 8 12 12 O 1.21565 * 120.00069 * 5.49678 * 11 10 9 13 13 C 1.47856 * 120.00158 * 185.48979 * 11 10 9 14 14 C 1.39939 * 120.02285 * 359.72467 * 13 11 10 15 15 C 1.38325 * 120.35479 * 179.76023 * 14 13 11 16 16 C 1.37762 * 120.41384 * 0.51823 * 15 14 13 17 17 C 1.40747 * 120.04145 * 359.74394 * 16 15 14 18 18 C 1.41440 * 120.17865 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00228 * 149.54162 * 18 17 16 20 20 C 1.39934 * 119.99954 * 329.54894 * 18 17 16 21 21 N 1.30821 * 120.00218 * 168.21714 * 20 18 17 22 22 Si 1.86810 * 119.99754 * 348.21292 * 20 18 17 23 23 H 1.48493 * 109.47082 * 93.23944 * 22 20 18 24 24 H 1.48501 * 109.46970 * 213.24308 * 22 20 18 25 25 H 1.48500 * 109.46837 * 333.23593 * 22 20 18 26 26 C 1.39004 * 120.03215 * 180.02562 * 13 11 10 27 27 C 1.38710 * 119.16927 * 359.97438 * 9 8 7 28 28 N 1.31906 * 120.74733 * 0.02562 * 27 9 8 29 29 H 1.09006 * 109.47270 * 274.27702 * 1 2 3 30 30 H 1.09003 * 109.47514 * 34.27076 * 1 2 3 31 31 H 1.08995 * 109.47767 * 154.27701 * 1 2 3 32 32 H 1.09001 * 109.47130 * 275.29780 * 5 4 2 33 33 H 1.08996 * 109.46728 * 35.29199 * 5 4 2 34 34 H 1.08996 * 109.46970 * 155.29680 * 5 4 2 35 35 H 1.08002 * 120.40845 * 0.25470 * 7 6 4 36 36 H 1.07995 * 120.78623 * 180.02562 * 8 7 6 37 37 H 0.97000 * 119.99680 * 209.24096 * 10 9 8 38 38 H 1.07996 * 119.82195 * 0.02838 * 14 13 11 39 39 H 1.07998 * 119.79694 * 180.26241 * 15 14 13 40 40 H 1.07997 * 119.97960 * 179.75994 * 16 15 14 41 41 H 0.97005 * 120.00253 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.20098 * 359.95801 * 26 13 11 43 43 H 1.08002 * 119.62644 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4538 -2.4327 -0.1283 6 6 3.5711 -1.1703 0.1206 7 6 4.2253 -0.0243 0.5585 8 6 5.6031 -0.0376 0.6757 9 6 6.2859 -1.2079 0.3472 10 7 7.6812 -1.2675 0.4512 11 6 8.3220 -0.5095 1.3628 12 8 7.6848 0.1498 2.1610 13 6 9.7999 -0.4799 1.3922 14 6 10.5339 -1.2432 0.4774 15 6 11.9168 -1.2168 0.4956 16 6 12.5875 -0.4475 1.4208 17 6 11.8664 0.3227 2.3524 18 6 12.5521 1.1140 3.3033 19 1 12.1074 2.0290 3.6657 20 6 13.8067 0.7114 3.7743 21 7 14.5420 1.5413 4.4686 22 14 14.4317 -1.0114 3.4118 23 1 15.2551 -0.9894 2.1762 24 1 15.2588 -1.4875 4.5495 25 1 13.2779 -1.9266 3.2216 26 6 10.4615 0.3013 2.3326 27 6 5.5659 -2.3127 -0.0828 28 7 4.2515 -2.2639 -0.1826 29 1 -0.3634 0.0766 1.0248 30 1 -0.3634 0.8492 -0.5787 31 1 -0.3634 -0.9257 -0.4460 32 1 1.1027 -2.7508 0.8534 33 1 0.6005 -2.2960 -0.7925 34 1 2.1173 -3.1928 -0.5406 35 1 3.6639 0.8639 0.8083 36 1 6.1376 0.8378 1.0136 37 1 8.1863 -1.8543 -0.1331 38 1 10.0179 -1.8528 -0.2495 39 1 12.4742 -1.8062 -0.2173 40 1 13.6674 -0.4351 1.4312 41 1 15.4115 1.2621 4.7955 42 1 9.8992 0.8888 3.0433 43 1 6.0874 -3.2230 -0.3395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412194591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:31 Heat of formation + Delta-G solvation = -6.402215 kcal Electronic energy + Delta-G solvation = -27508.067359 eV Core-core repulsion = 23518.188872 eV Total energy + Delta-G solvation = -3989.878487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.34392 -41.43562 -40.10950 -39.11055 -37.08895 -35.92247 -35.52468 -33.39552 -32.75304 -31.95501 -31.45153 -29.59284 -27.97818 -27.14159 -25.53085 -24.62832 -23.91175 -22.51707 -21.73352 -21.06775 -19.96642 -18.92794 -18.76430 -18.07887 -17.93496 -17.39549 -17.11481 -16.67583 -16.49440 -16.24739 -15.80999 -15.64055 -15.44481 -15.08759 -14.75062 -14.60261 -14.54842 -14.29521 -14.14065 -13.97238 -13.81937 -13.68658 -13.39872 -13.13105 -12.91867 -12.68118 -12.66296 -12.35169 -12.23227 -11.72094 -11.63431 -11.49730 -11.16051 -10.93602 -10.86052 -10.83566 -10.22424 -9.67775 -9.63957 -8.90221 -8.84670 -6.59353 -0.26133 0.13593 0.21905 0.71877 1.24537 1.38497 1.41386 1.48622 1.54487 1.84851 1.91698 2.10369 2.60540 2.77028 3.35826 3.40650 3.55547 3.64002 3.80562 3.90515 4.01952 4.21626 4.23693 4.35287 4.41300 4.51159 4.55852 4.60622 4.69076 4.72968 4.82574 4.87810 4.90210 4.96858 5.08698 5.12407 5.16626 5.35798 5.37977 5.58097 5.65574 5.76438 5.81094 5.95301 6.05155 6.25697 6.37049 6.61058 6.71123 6.78124 6.89207 7.01486 8.18747 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002081 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.432781 B =13454.240458 C =14065.461675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.567 6.567 4 N -0.546 5.546 5 C 0.065 3.935 6 C 0.321 3.679 7 C -0.185 4.185 8 C -0.080 4.080 9 C 0.071 3.929 10 N -0.643 5.643 11 C 0.564 3.436 12 O -0.562 6.562 13 C -0.113 4.113 14 C -0.176 4.176 15 C -0.081 4.081 16 C -0.221 4.221 17 C 0.063 3.937 18 C -0.485 4.485 19 H 0.047 0.953 20 C 0.037 3.963 21 N -0.856 5.856 22 Si 0.974 3.026 23 H -0.246 1.246 24 H -0.282 1.282 25 H -0.244 1.244 26 C -0.162 4.162 27 C 0.115 3.885 28 N -0.490 5.490 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.431 0.569 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.107 0.893 41 H 0.295 0.705 42 H 0.089 0.911 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.836 -14.837 -13.669 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.295 3.705 3 O -0.446 6.446 4 N -0.272 5.272 5 C -0.075 4.075 6 C 0.091 3.909 7 C -0.208 4.208 8 C -0.109 4.109 9 C -0.026 4.026 10 N -0.290 5.290 11 C 0.355 3.645 12 O -0.441 6.441 13 C -0.116 4.116 14 C -0.196 4.196 15 C -0.099 4.099 16 C -0.240 4.240 17 C 0.061 3.939 18 C -0.515 4.515 19 H 0.066 0.934 20 C -0.176 4.176 21 N -0.482 5.482 22 Si 0.796 3.204 23 H -0.171 1.171 24 H -0.209 1.209 25 H -0.167 1.167 26 C -0.182 4.182 27 C -0.046 4.046 28 N -0.204 5.204 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.176 0.824 36 H 0.145 0.855 37 H 0.273 0.727 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -24.280 -14.422 -13.245 31.193 hybrid contribution 1.548 1.045 0.807 2.035 sum -22.732 -13.377 -12.438 29.161 Atomic orbital electron populations 1.22065 0.85529 1.07368 1.06963 1.22167 0.93126 0.81418 0.73764 1.90597 1.70983 1.33149 1.49840 1.45687 1.02745 1.10274 1.68513 1.22318 0.97814 0.83132 1.04220 1.18532 0.85808 0.90670 0.95865 1.22580 0.94403 1.01280 1.02538 1.21639 0.94336 0.97794 0.97095 1.18886 0.84279 0.95312 1.04165 1.43105 1.04294 1.44432 1.37147 1.18782 0.88246 0.78196 0.79227 1.90717 1.68701 1.44114 1.40603 1.19507 0.90398 1.01983 0.99733 1.21073 0.93902 1.03334 1.01245 1.21064 0.94468 0.97114 0.97265 1.21417 0.98940 1.04709 0.98937 1.17782 0.91872 0.91897 0.92390 1.19481 1.01966 1.07617 1.22438 0.93423 1.26990 0.94904 1.03416 0.92294 1.69690 1.11172 1.38066 1.29314 0.85402 0.79236 0.77547 0.78199 1.17141 1.20946 1.16730 1.21196 0.93802 1.02819 1.00407 1.22749 0.87788 0.96828 0.97200 1.67073 1.08717 1.26393 1.18209 0.86466 0.87859 0.86263 0.90160 0.86932 0.89291 0.82387 0.85548 0.72713 0.82626 0.83046 0.87506 0.89499 0.89236 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.88 71.23 0.70 -0.31 16 2 C 0.50 9.40 7.64 87.66 0.67 10.07 16 3 O -0.57 -16.17 13.78 -3.04 -0.04 -16.21 16 4 N -0.55 -10.09 3.09 -660.59 -2.04 -12.13 16 5 C 0.07 0.56 9.92 127.77 1.27 1.83 16 6 C 0.32 8.21 7.24 132.87 0.96 9.17 16 7 C -0.19 -5.71 8.86 22.47 0.20 -5.51 16 8 C -0.08 -2.64 8.78 22.56 0.20 -2.44 16 9 C 0.07 1.94 6.37 38.23 0.24 2.19 16 10 N -0.64 -16.95 5.31 -305.67 -1.62 -18.57 16 11 C 0.56 20.84 7.56 86.79 0.66 21.49 16 12 O -0.56 -25.18 13.80 -3.92 -0.05 -25.23 16 13 C -0.11 -4.45 5.87 -20.14 -0.12 -4.57 16 14 C -0.18 -5.52 9.55 22.70 0.22 -5.30 16 15 C -0.08 -2.75 10.01 22.18 0.22 -2.52 16 16 C -0.22 -9.55 6.94 22.77 0.16 -9.39 16 17 C 0.06 3.21 5.16 -21.32 -0.11 3.10 16 18 C -0.49 -27.86 9.61 23.47 0.23 -27.63 16 19 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 20 C 0.04 2.01 5.47 85.25 0.47 2.47 16 21 N -0.86 -47.65 13.93 21.82 0.30 -47.35 16 22 Si 0.97 41.23 24.37 68.60 1.67 42.90 16 23 H -0.25 -9.43 6.71 99.48 0.67 -8.76 16 24 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.24 -10.26 6.57 99.48 0.65 -9.60 16 26 C -0.16 -7.88 9.34 23.01 0.21 -7.67 16 27 C 0.11 2.42 11.10 84.79 0.94 3.36 16 28 N -0.49 -11.19 9.03 -192.46 -1.74 -12.93 16 29 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.12 -0.03 5.77 -2.39 -0.01 -0.05 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.11 0.16 6.19 -2.39 -0.01 0.14 16 34 H 0.09 0.94 7.10 -2.39 -0.02 0.93 16 35 H 0.16 5.28 5.13 -12.10 -0.06 5.22 16 36 H 0.13 4.79 6.22 -2.91 -0.02 4.77 16 37 H 0.43 7.65 6.84 -92.71 -0.63 7.02 16 38 H 0.16 3.12 6.39 -2.91 -0.02 3.10 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.11 4.54 4.28 -2.91 -0.01 4.52 16 41 H 0.29 14.64 8.30 -92.70 -0.77 13.87 16 42 H 0.09 4.72 7.64 -2.91 -0.02 4.70 16 43 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -79.33 355.44 3.91 -75.41 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.32 Total: 25.78 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 7.12 Total: -11.68 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -5.10 Total: -90.98 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.10 Total: -41.44 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.67 Total: 42.90 kcal Total: -79.33 3.91 -75.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412194591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.012 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds