Wall clock time and date at job start Tue Mar 31 2020 22:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38353 * 127.14880 * 2 1 4 4 C 1.39775 * 126.56424 * 0.02562 * 3 2 1 5 5 H 1.08007 * 120.00089 * 5.78338 * 4 3 2 6 6 C 1.40080 * 119.99909 * 185.77606 * 4 3 2 7 7 N 1.30825 * 120.00097 * 184.12718 * 6 4 3 8 8 Si 1.86798 * 120.00275 * 4.13591 * 6 4 3 9 9 H 1.48499 * 109.47352 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.46975 * 299.99689 * 8 6 4 11 11 H 1.48498 * 109.46958 * 59.99374 * 8 6 4 12 12 N 1.33093 * 106.86806 * 179.75129 * 3 2 1 13 13 N 1.28507 * 109.74911 * 0.22911 * 12 3 2 14 14 C 1.32391 * 110.20502 * 359.97438 * 13 12 3 15 15 S 1.76196 * 126.25886 * 179.97438 * 14 13 12 16 16 C 1.81000 * 100.00211 * 359.97340 * 15 14 13 17 17 C 1.50702 * 109.47089 * 180.02562 * 16 15 14 18 18 O 1.20764 * 119.99905 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99703 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47040 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47404 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.48612 * 305.02560 * 21 20 19 23 23 C 1.53093 * 109.48257 * 185.00052 * 21 20 19 24 24 C 1.53176 * 109.16485 * 182.41201 * 23 21 20 25 25 C 1.53179 * 109.03788 * 56.97876 * 24 23 21 26 26 C 1.53091 * 109.16547 * 303.02188 * 25 24 23 27 27 O 1.42905 * 109.41229 * 57.60710 * 26 25 24 28 28 H 1.09003 * 109.46898 * 90.00518 * 1 2 3 29 29 H 1.08997 * 109.46577 * 209.99843 * 1 2 3 30 30 H 1.08997 * 109.47220 * 330.00098 * 1 2 3 31 31 H 0.97003 * 119.99549 * 354.85387 * 7 6 4 32 32 H 1.08996 * 109.46881 * 299.99847 * 16 15 14 33 33 H 1.08996 * 109.47039 * 59.99933 * 16 15 14 34 34 H 1.08999 * 109.47157 * 299.99187 * 19 17 16 35 35 H 1.09003 * 109.47602 * 59.99970 * 19 17 16 36 36 H 1.09005 * 109.47419 * 299.99902 * 20 19 17 37 37 H 1.09004 * 109.47115 * 60.00023 * 20 19 17 38 38 H 1.09000 * 109.52250 * 302.31541 * 23 21 20 39 39 H 1.08993 * 109.52316 * 62.43936 * 23 21 20 40 40 H 1.08996 * 109.54964 * 176.84610 * 24 23 21 41 41 H 1.09002 * 109.54468 * 297.11895 * 24 23 21 42 42 H 1.08997 * 109.52136 * 62.92457 * 25 24 23 43 43 H 1.08999 * 109.52238 * 183.11352 * 25 24 23 44 44 H 1.08998 * 109.48594 * 177.58838 * 26 25 24 45 45 H 1.09003 * 109.48135 * 297.62430 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1028 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8639 2.7018 0.0952 6 6 2.8706 3.4552 -0.1217 7 7 2.5138 4.7112 -0.0402 8 14 4.6631 3.0099 -0.4011 9 1 5.4727 4.2512 -0.4958 10 1 5.1510 2.1856 0.7336 11 1 4.7905 2.2387 -1.6638 12 7 3.5490 0.6414 0.0055 13 7 3.5371 -0.6436 0.0040 14 6 2.2905 -1.0893 -0.0020 15 16 1.7875 -2.7779 -0.0067 16 6 3.4061 -3.5880 -0.0019 17 6 3.2195 -5.0834 -0.0058 18 8 2.1069 -5.5530 -0.0108 19 6 4.4211 -5.9927 -0.0023 20 6 3.9574 -7.4508 -0.0067 21 6 5.1774 -8.3740 -0.0038 22 1 5.8264 -8.1216 -0.8423 23 6 4.7174 -9.8284 -0.1340 24 6 5.9393 -10.7499 -0.0697 25 6 6.6907 -10.4928 1.2402 26 6 7.0745 -9.0128 1.3173 27 8 5.8956 -8.2108 1.2209 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.5750 4.9451 0.0298 32 1 3.9643 -3.2896 -0.8893 33 1 3.9576 -3.2926 0.8906 34 1 5.0248 -5.8005 -0.8893 35 1 5.0170 -5.8040 0.8907 36 1 3.3539 -7.6428 0.8805 37 1 3.3614 -7.6398 -0.8995 38 1 4.0362 -10.0694 0.6821 39 1 4.2068 -9.9650 -1.0871 40 1 5.6143 -11.7896 -0.1055 41 1 6.5971 -10.5428 -0.9139 42 1 6.0493 -10.7472 2.0840 43 1 7.5921 -11.1049 1.2692 44 1 7.5718 -8.8152 2.2669 45 1 7.7484 -8.7688 0.4961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412932705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:31 Heat of formation + Delta-G solvation = -46.911886 kcal Electronic energy + Delta-G solvation = -25981.432106 eV Core-core repulsion = 22125.240940 eV Total energy + Delta-G solvation = -3856.191167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95008 -40.05442 -39.33049 -34.31179 -33.98941 -33.95393 -33.59449 -31.27497 -30.09560 -29.53663 -26.75929 -25.99602 -25.29157 -24.20465 -22.01486 -21.46203 -20.72392 -20.34753 -19.50993 -18.21582 -16.95334 -16.88678 -16.55479 -15.89476 -15.71019 -15.36949 -15.08027 -15.03341 -14.83046 -14.60685 -13.95458 -13.82153 -13.69836 -13.59889 -13.13854 -13.07827 -12.69003 -12.63925 -12.47516 -12.35995 -12.11944 -11.93643 -11.59468 -11.54349 -11.24902 -11.16083 -11.08369 -10.88230 -10.65357 -10.39030 -9.91743 -9.88995 -9.69587 -9.59139 -9.41763 -9.11397 -8.69889 -8.41704 -7.44491 -7.10633 -4.86004 1.69847 1.83131 2.54985 2.88673 3.41382 3.55404 3.57998 3.78052 3.86149 4.03109 4.12625 4.34601 4.37032 4.39470 4.44114 4.50561 4.75292 4.77074 4.90714 4.94215 5.07456 5.08944 5.19880 5.22769 5.25300 5.33534 5.38436 5.43643 5.45801 5.55529 5.60107 5.61371 5.66070 5.72861 5.75609 5.86644 5.91210 5.96722 6.35041 6.62622 6.90063 7.10392 7.32581 7.38158 7.50945 8.02914 8.33095 8.53748 9.94209 10.08279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.002013 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.470251 B =13906.025776 C =14929.254895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.511 5.511 3 C 0.345 3.655 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.807 5.807 8 Si 1.113 2.887 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.281 1.281 12 N -0.416 5.416 13 N -0.272 5.272 14 C 0.056 3.944 15 S 0.002 5.998 16 C -0.163 4.163 17 C 0.375 3.625 18 O -0.442 6.442 19 C -0.160 4.160 20 C -0.103 4.103 21 C 0.090 3.910 22 H 0.060 0.940 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.158 4.158 26 C 0.061 3.939 27 O -0.377 6.377 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.283 0.717 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -26.643 -0.323 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.212 5.212 3 C 0.102 3.898 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.159 4.159 7 N -0.431 5.431 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.266 5.266 13 N -0.116 5.116 14 C -0.318 4.318 15 S 0.229 5.771 16 C -0.312 4.312 17 C 0.249 3.751 18 O -0.314 6.314 19 C -0.199 4.199 20 C -0.140 4.140 21 C 0.032 3.968 22 H 0.078 0.922 23 C -0.189 4.189 24 C -0.161 4.161 25 C -0.195 4.195 26 C -0.016 4.016 27 O -0.296 6.296 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.763 -26.571 -0.300 27.191 hybrid contribution -1.873 0.002 -0.023 1.873 sum 3.890 -26.569 -0.322 26.855 Atomic orbital electron populations 1.21556 0.77690 1.03011 1.02085 1.45823 1.06456 1.04844 1.64118 1.21723 0.85108 0.89084 0.93892 1.19399 0.97450 0.87223 1.49163 0.89883 1.27367 1.08497 0.91271 0.88747 1.70682 1.21564 1.18449 1.32370 0.82691 0.70586 0.72140 0.80407 1.24128 1.18589 1.20733 1.73961 1.15933 1.00951 1.35724 1.74235 1.15432 1.05676 1.16259 1.25685 0.90972 0.93884 1.21238 1.85113 1.07334 0.89233 1.95389 1.24075 1.01606 0.96277 1.09274 1.24107 0.90645 0.89838 0.70545 1.90416 1.27582 1.78192 1.35258 1.22011 0.97650 0.94484 1.05716 1.21452 0.96054 0.92319 1.04212 1.22147 0.93297 0.94196 0.87128 0.92217 1.22207 0.98354 0.95240 1.03104 1.21590 0.97067 0.99816 0.97585 1.22202 1.01100 0.97594 0.98651 1.22556 0.87190 0.89737 1.02144 1.87960 1.38708 1.64647 1.38292 0.92085 0.91094 0.90228 0.90545 0.85738 0.85685 0.88125 0.87173 0.90269 0.89820 0.90871 0.90756 0.91493 0.91838 0.91032 0.90992 0.88848 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 10.89 59.85 0.65 2.48 16 2 N -0.51 -11.98 3.26 -123.18 -0.40 -12.38 16 3 C 0.35 9.25 7.27 -154.81 -1.13 8.12 16 4 C -0.49 -13.24 9.50 -38.32 -0.36 -13.60 16 5 H 0.08 2.17 7.46 -52.48 -0.39 1.78 16 6 C 0.06 1.73 5.52 -17.29 -0.10 1.63 16 7 N -0.81 -21.67 13.65 55.56 0.76 -20.91 16 8 Si 1.11 27.97 25.90 -169.99 -4.40 23.57 16 9 H -0.31 -7.51 7.11 56.52 0.40 -7.10 16 10 H -0.26 -6.73 6.76 56.52 0.38 -6.35 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 12 N -0.42 -11.51 7.52 31.26 0.23 -11.27 16 13 N -0.27 -6.89 11.62 30.89 0.36 -6.53 16 14 C 0.06 1.27 8.09 -87.28 -0.71 0.57 16 15 S 0.00 0.04 20.93 -107.50 -2.25 -2.21 16 16 C -0.16 -2.30 5.64 36.01 0.20 -2.10 16 17 C 0.38 4.54 7.18 -29.04 -0.21 4.33 16 18 O -0.44 -6.52 15.49 6.00 0.09 -6.43 16 19 C -0.16 -1.40 5.53 -27.88 -0.15 -1.56 16 20 C -0.10 -0.88 4.21 -26.73 -0.11 -1.00 16 21 C 0.09 0.69 2.64 -26.69 -0.07 0.62 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 23 C -0.15 -1.00 5.42 -26.59 -0.14 -1.14 16 24 C -0.12 -0.70 6.03 -26.55 -0.16 -0.86 16 25 C -0.16 -0.90 6.14 -26.59 -0.16 -1.06 16 26 C 0.06 0.40 6.84 37.20 0.25 0.66 16 27 O -0.38 -3.40 9.94 -35.23 -0.35 -3.75 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 30 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16 31 H 0.28 7.23 8.73 -40.82 -0.36 6.88 16 32 H 0.12 1.70 8.14 -51.92 -0.42 1.28 16 33 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.11 0.94 7.82 -51.93 -0.41 0.53 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -32.98 381.55 -9.51 -42.49 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -7.10 Total: -5.41 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.19 Total: -2.92 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.95 Total: -51.10 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.26 Total: -10.18 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.40 Total: 23.57 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.25 Total: -2.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.98 -9.51 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412932705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.424 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds