Wall clock time and date at job start Tue Mar 31 2020 22:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38353 * 127.14880 * 2 1 4 4 C 1.39775 * 126.56424 * 0.02562 * 3 2 1 5 5 H 1.08007 * 120.00089 * 5.78338 * 4 3 2 6 6 C 1.40080 * 119.99909 * 185.77606 * 4 3 2 7 7 N 1.30825 * 120.00097 * 184.12718 * 6 4 3 8 8 Si 1.86798 * 120.00275 * 4.13591 * 6 4 3 9 9 H 1.48499 * 109.47352 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.46975 * 299.99689 * 8 6 4 11 11 H 1.48498 * 109.46958 * 59.99374 * 8 6 4 12 12 N 1.33093 * 106.86806 * 179.75129 * 3 2 1 13 13 N 1.28507 * 109.74911 * 0.22911 * 12 3 2 14 14 C 1.32391 * 110.20502 * 359.97438 * 13 12 3 15 15 S 1.76196 * 126.25886 * 179.97438 * 14 13 12 16 16 C 1.81000 * 100.00211 * 359.97340 * 15 14 13 17 17 C 1.50702 * 109.47089 * 180.02562 * 16 15 14 18 18 O 1.20764 * 119.99905 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99703 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47040 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47404 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.48612 * 305.02560 * 21 20 19 23 23 C 1.53093 * 109.48257 * 185.00052 * 21 20 19 24 24 C 1.53176 * 109.16485 * 182.41201 * 23 21 20 25 25 C 1.53179 * 109.03788 * 56.97876 * 24 23 21 26 26 C 1.53091 * 109.16547 * 303.02188 * 25 24 23 27 27 O 1.42905 * 109.41229 * 57.60710 * 26 25 24 28 28 H 1.09003 * 109.46898 * 90.00518 * 1 2 3 29 29 H 1.08997 * 109.46577 * 209.99843 * 1 2 3 30 30 H 1.08997 * 109.47220 * 330.00098 * 1 2 3 31 31 H 0.97003 * 119.99549 * 354.85387 * 7 6 4 32 32 H 1.08996 * 109.46881 * 299.99847 * 16 15 14 33 33 H 1.08996 * 109.47039 * 59.99933 * 16 15 14 34 34 H 1.08999 * 109.47157 * 299.99187 * 19 17 16 35 35 H 1.09003 * 109.47602 * 59.99970 * 19 17 16 36 36 H 1.09005 * 109.47419 * 299.99902 * 20 19 17 37 37 H 1.09004 * 109.47115 * 60.00023 * 20 19 17 38 38 H 1.09000 * 109.52250 * 302.31541 * 23 21 20 39 39 H 1.08993 * 109.52316 * 62.43936 * 23 21 20 40 40 H 1.08996 * 109.54964 * 176.84610 * 24 23 21 41 41 H 1.09002 * 109.54468 * 297.11895 * 24 23 21 42 42 H 1.08997 * 109.52136 * 62.92457 * 25 24 23 43 43 H 1.08999 * 109.52238 * 183.11352 * 25 24 23 44 44 H 1.08998 * 109.48594 * 177.58838 * 26 25 24 45 45 H 1.09003 * 109.48135 * 297.62430 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1028 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8639 2.7018 0.0952 6 6 2.8706 3.4552 -0.1217 7 7 2.5138 4.7112 -0.0402 8 14 4.6631 3.0099 -0.4011 9 1 5.4727 4.2512 -0.4958 10 1 5.1510 2.1856 0.7336 11 1 4.7905 2.2387 -1.6638 12 7 3.5490 0.6414 0.0055 13 7 3.5371 -0.6436 0.0040 14 6 2.2905 -1.0893 -0.0020 15 16 1.7875 -2.7779 -0.0067 16 6 3.4061 -3.5880 -0.0019 17 6 3.2195 -5.0834 -0.0058 18 8 2.1069 -5.5530 -0.0108 19 6 4.4211 -5.9927 -0.0023 20 6 3.9574 -7.4508 -0.0067 21 6 5.1774 -8.3740 -0.0038 22 1 5.8264 -8.1216 -0.8423 23 6 4.7174 -9.8284 -0.1340 24 6 5.9393 -10.7499 -0.0697 25 6 6.6907 -10.4928 1.2402 26 6 7.0745 -9.0128 1.3173 27 8 5.8956 -8.2108 1.2209 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.5750 4.9451 0.0298 32 1 3.9643 -3.2896 -0.8893 33 1 3.9576 -3.2926 0.8906 34 1 5.0248 -5.8005 -0.8893 35 1 5.0170 -5.8040 0.8907 36 1 3.3539 -7.6428 0.8805 37 1 3.3614 -7.6398 -0.8995 38 1 4.0362 -10.0694 0.6821 39 1 4.2068 -9.9650 -1.0871 40 1 5.6143 -11.7896 -0.1055 41 1 6.5971 -10.5428 -0.9139 42 1 6.0493 -10.7472 2.0840 43 1 7.5921 -11.1049 1.2692 44 1 7.5718 -8.8152 2.2669 45 1 7.7484 -8.7688 0.4961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412932705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:30 Heat of formation + Delta-G solvation = -65.363431 kcal Electronic energy + Delta-G solvation = -25982.232225 eV Core-core repulsion = 22125.240940 eV Total energy + Delta-G solvation = -3856.991286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85745 -40.85461 -40.11094 -35.94160 -35.41567 -34.97474 -34.51052 -32.30703 -31.86069 -30.41760 -28.43501 -27.28144 -26.53340 -24.75518 -23.36119 -22.70299 -22.13607 -21.23470 -20.51258 -20.19608 -18.46364 -17.53993 -17.38511 -17.10596 -16.94188 -16.61422 -16.49309 -16.11424 -15.71688 -15.50994 -15.37629 -15.20327 -14.82577 -14.60497 -14.47964 -14.30223 -14.19875 -13.59602 -13.56466 -13.53754 -13.11709 -13.02695 -12.85263 -12.74061 -12.15486 -12.07536 -11.98936 -11.82818 -11.76300 -11.58558 -11.53925 -11.41089 -11.19323 -10.93301 -10.82967 -10.58143 -10.37355 -10.29843 -9.49594 -8.73364 -6.86870 0.21355 0.83846 0.97193 1.07960 1.54890 1.59933 1.94503 2.11906 2.19838 2.42020 2.81250 2.89763 3.03775 3.75063 3.82216 3.91700 3.96183 4.01244 4.03649 4.10620 4.19226 4.31246 4.34999 4.39286 4.44668 4.46083 4.52178 4.54506 4.63335 4.68646 4.73188 4.81988 4.89097 4.95548 5.03065 5.10837 5.15724 5.20191 5.22056 5.29444 5.36356 5.42385 5.66945 5.99560 6.32746 6.37969 6.38434 6.55628 7.91800 8.13203 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.002013 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.470251 B =13906.025776 C =14929.254895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.515 5.515 3 C 0.325 3.675 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.041 3.959 7 N -0.822 5.822 8 Si 1.146 2.854 9 H -0.297 1.297 10 H -0.276 1.276 11 H -0.293 1.293 12 N -0.445 5.445 13 N -0.305 5.305 14 C 0.073 3.927 15 S 0.023 5.977 16 C -0.165 4.165 17 C 0.388 3.612 18 O -0.470 6.470 19 C -0.151 4.151 20 C -0.100 4.100 21 C 0.091 3.909 22 H 0.072 0.928 23 C -0.152 4.152 24 C -0.123 4.123 25 C -0.156 4.156 26 C 0.054 3.946 27 O -0.399 6.399 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.286 0.714 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -28.959 -0.835 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.078 3.922 4 C -0.550 4.550 5 H 0.100 0.900 6 C -0.179 4.179 7 N -0.447 5.447 8 Si 0.975 3.025 9 H -0.226 1.226 10 H -0.202 1.202 11 H -0.220 1.220 12 N -0.294 5.294 13 N -0.147 5.147 14 C -0.302 4.302 15 S 0.249 5.751 16 C -0.314 4.314 17 C 0.263 3.737 18 O -0.345 6.345 19 C -0.189 4.189 20 C -0.138 4.138 21 C 0.033 3.967 22 H 0.090 0.910 23 C -0.189 4.189 24 C -0.160 4.160 25 C -0.194 4.194 26 C -0.022 4.022 27 O -0.319 6.319 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.183 -28.877 -0.810 29.542 hybrid contribution -2.072 0.447 0.154 2.125 sum 4.112 -28.430 -0.656 28.733 Atomic orbital electron populations 1.21900 0.74790 1.04528 1.03756 1.46186 1.08368 1.04223 1.62725 1.21799 0.85719 0.89871 0.94779 1.19405 0.97437 0.87617 1.50507 0.89951 1.27821 1.09835 0.91457 0.88801 1.70677 1.21845 1.18450 1.33723 0.82205 0.69471 0.71861 0.78979 1.22641 1.20225 1.22038 1.73851 1.16902 1.02270 1.36358 1.74166 1.16807 1.04848 1.18919 1.26649 0.90409 0.96157 1.16935 1.85171 1.09820 0.85465 1.94631 1.24349 0.99567 0.97429 1.10034 1.24324 0.91300 0.88844 0.69206 1.90423 1.28858 1.78258 1.36931 1.22025 0.96109 0.93577 1.07198 1.21426 0.96451 0.92379 1.03550 1.22167 0.92939 0.94427 0.87151 0.90979 1.22206 0.98696 0.94944 1.03097 1.21608 0.96722 0.99921 0.97779 1.22192 1.01569 0.97275 0.98361 1.22715 0.86655 0.90000 1.02842 1.87922 1.39605 1.65400 1.38997 0.90289 0.88555 0.89775 0.90306 0.84863 0.85240 0.85537 0.86475 0.92021 0.89500 0.92051 0.89892 0.90866 0.91058 0.91997 0.89538 0.88377 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.18 10.89 127.77 1.39 4.57 16 2 N -0.52 -23.60 3.26 -543.62 -1.77 -25.37 16 3 C 0.33 17.44 7.27 133.23 0.97 18.40 16 4 C -0.51 -27.63 9.50 23.09 0.22 -27.41 16 5 H 0.08 4.35 7.46 -2.91 -0.02 4.32 16 6 C 0.04 2.23 5.52 85.29 0.47 2.70 16 7 N -0.82 -44.32 13.65 21.86 0.30 -44.02 16 8 Si 1.15 57.68 25.90 68.60 1.78 59.46 16 9 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.28 -14.42 6.76 99.48 0.67 -13.75 16 11 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 12 N -0.45 -24.72 7.52 -55.02 -0.41 -25.14 16 13 N -0.30 -15.26 11.62 -56.18 -0.65 -15.92 16 14 C 0.07 3.24 8.09 179.18 1.45 4.69 16 15 S 0.02 0.75 20.93 -56.49 -1.18 -0.43 16 16 C -0.16 -4.30 5.64 71.24 0.40 -3.90 16 17 C 0.39 8.53 7.18 29.10 0.21 8.74 16 18 O -0.47 -13.04 15.49 -1.46 -0.02 -13.07 16 19 C -0.15 -2.26 5.53 29.85 0.17 -2.09 16 20 C -0.10 -1.54 4.21 30.59 0.13 -1.41 16 21 C 0.09 1.20 2.64 30.62 0.08 1.28 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 C -0.15 -1.76 5.42 30.68 0.17 -1.59 16 24 C -0.12 -1.14 6.03 30.71 0.19 -0.95 16 25 C -0.16 -1.51 6.14 30.68 0.19 -1.32 16 26 C 0.05 0.62 6.84 72.01 0.49 1.12 16 27 O -0.40 -6.55 9.94 -148.98 -1.48 -8.03 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.10 2.80 7.85 -2.39 -0.02 2.78 16 30 H 0.08 2.82 7.48 -2.39 -0.02 2.80 16 31 H 0.29 14.70 8.73 -92.71 -0.81 13.89 16 32 H 0.13 3.33 8.14 -2.40 -0.02 3.31 16 33 H 0.13 3.35 8.14 -2.40 -0.02 3.33 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 1.70 7.82 -2.39 -0.02 1.68 16 36 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 37 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -70.67 381.55 3.98 -66.70 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.91 Total: 2.99 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 6.52 Total: 2.82 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -2.54 Total: -110.44 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -1.50 Total: -21.10 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 1.78 Total: 59.46 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.18 Total: -0.43 kcal Total: -70.67 3.98 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412932705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.332 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds