Wall clock time and date at job start Tue Mar 31 2020 22:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38352 * 127.15227 * 2 1 4 4 C 1.39774 * 126.56401 * 359.97438 * 3 2 1 5 5 H 1.08005 * 120.00346 * 0.02562 * 4 3 2 6 6 C 1.40083 * 120.00270 * 179.97438 * 4 3 2 7 7 N 1.30815 * 119.99734 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00431 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47168 * 60.00178 * 8 6 4 10 10 H 1.48493 * 109.47421 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46921 * 300.00386 * 8 6 4 12 12 N 1.33099 * 106.87119 * 179.97438 * 3 2 1 13 13 N 1.28516 * 109.74203 * 359.76440 * 12 3 2 14 14 C 1.32383 * 110.20528 * 0.39126 * 13 12 3 15 15 S 1.76203 * 126.25509 * 179.88104 * 14 13 12 16 16 C 1.80995 * 100.00274 * 359.68460 * 15 14 13 17 17 C 1.52996 * 109.47369 * 180.02562 * 16 15 14 18 18 H 1.08999 * 109.50223 * 60.05085 * 17 16 15 19 19 C 1.53091 * 109.48945 * 180.10087 * 17 16 15 20 20 C 1.53299 * 109.30740 * 178.05529 * 19 17 16 21 21 C 1.53292 * 108.89254 * 302.56717 * 20 19 17 22 22 C 1.52485 * 109.24728 * 55.98055 * 21 20 19 23 23 C 1.54021 * 110.15032 * 66.38587 * 22 21 20 24 24 C 1.54596 * 103.88667 * 118.25378 * 23 22 21 25 25 O 1.44475 * 104.82204 * 23.90159 * 24 23 22 26 26 C 1.44548 * 105.35979 * 319.82666 * 25 24 23 27 27 O 1.42203 * 110.97152 * 303.90079 * 22 21 20 28 28 H 1.09004 * 109.47477 * 270.02060 * 1 2 3 29 29 H 1.09000 * 109.47279 * 30.01906 * 1 2 3 30 30 H 1.08997 * 109.47177 * 150.01631 * 1 2 3 31 31 H 0.97000 * 120.00164 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.46713 * 60.00004 * 16 15 14 33 33 H 1.09000 * 109.47241 * 300.00658 * 16 15 14 34 34 H 1.08997 * 109.49794 * 297.99494 * 19 17 16 35 35 H 1.08996 * 109.50024 * 58.11209 * 19 17 16 36 36 H 1.09001 * 109.62892 * 182.72260 * 20 19 17 37 37 H 1.09000 * 109.54467 * 62.36621 * 20 19 17 38 38 H 1.09002 * 109.51801 * 296.03449 * 21 20 19 39 39 H 1.09001 * 109.51254 * 175.92569 * 21 20 19 40 40 H 1.09001 * 110.54078 * 236.85393 * 23 22 21 41 41 H 1.09003 * 110.54852 * 359.50432 * 23 22 21 42 42 H 1.09000 * 110.37371 * 142.73870 * 24 23 22 43 43 H 1.09008 * 110.36999 * 265.06625 * 24 23 22 44 44 H 1.08999 * 110.38598 * 281.20220 * 26 25 24 45 45 H 1.08996 * 110.38589 * 158.82017 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8594 2.7005 -0.0005 6 6 2.8767 3.4569 0.0001 7 7 4.1475 3.1467 0.0006 8 14 2.3530 5.2500 -0.0013 9 1 1.5409 5.5294 1.2103 10 1 3.5580 6.1177 -0.0010 11 1 1.5435 5.5282 -1.2148 12 7 3.5490 0.6414 0.0006 13 7 3.5369 -0.6437 0.0059 14 6 2.2903 -1.0893 0.0006 15 16 1.7873 -2.7780 0.0018 16 6 3.4058 -3.5881 0.0020 17 6 3.2163 -5.1063 0.0024 18 1 2.6622 -5.4041 -0.8878 19 6 4.5851 -5.7920 0.0051 20 6 4.3906 -7.3117 0.0546 21 6 3.5698 -7.6668 1.2996 22 6 2.2550 -6.8950 1.2718 23 6 1.3806 -7.3784 0.0995 24 6 0.1150 -7.9395 0.7874 25 8 0.0582 -7.2650 2.0638 26 6 1.4255 -7.2112 2.5296 27 8 2.4882 -5.4959 1.1702 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 4.8179 3.8478 0.0007 32 1 3.9609 -3.2906 0.8917 33 1 3.9606 -3.2918 -0.8882 34 1 5.1279 -5.5241 -0.9013 35 1 5.1519 -5.4692 0.8783 36 1 5.3619 -7.8037 0.1055 37 1 3.8595 -7.6407 -0.8386 38 1 4.1309 -7.3981 2.1946 39 1 3.3636 -8.7371 1.3067 40 1 1.1231 -6.5453 -0.5545 41 1 1.8920 -8.1602 -0.4621 42 1 -0.7717 -7.7091 0.1968 43 1 0.2069 -9.0162 0.9311 44 1 1.7220 -8.1729 2.9482 45 1 1.5432 -6.4208 3.2708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412933439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:03 Heat of formation + Delta-G solvation = -27.311428 kcal Electronic energy + Delta-G solvation = -27399.619057 eV Core-core repulsion = 23544.277830 eV Total energy + Delta-G solvation = -3855.341227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84880 -40.44767 -38.03619 -33.96072 -33.66773 -33.38783 -33.13439 -30.52927 -29.33775 -28.81180 -26.50703 -26.18605 -25.44095 -23.28993 -22.82093 -21.94906 -20.75915 -20.33229 -19.30309 -17.31901 -17.27054 -16.60984 -16.16596 -15.84415 -15.70327 -15.42822 -15.00065 -14.68267 -14.65075 -14.24727 -13.98278 -13.79320 -13.30336 -13.20975 -12.99434 -12.83261 -12.55223 -12.23259 -12.18085 -11.96490 -11.87753 -11.62737 -11.39420 -11.27766 -11.25134 -11.19624 -10.89369 -10.88117 -10.42733 -10.34806 -10.18537 -9.93971 -9.67292 -9.57012 -9.45538 -8.64221 -8.36130 -8.32633 -6.73176 -6.61550 -4.53152 2.11249 2.92088 2.95648 3.07968 3.10198 3.36991 3.41367 3.75784 3.89977 4.21193 4.28770 4.44051 4.46356 4.52002 4.60915 4.75517 4.76827 4.84186 5.01313 5.08653 5.13598 5.18326 5.33676 5.36405 5.45748 5.48903 5.54541 5.56201 5.60226 5.61458 5.70171 5.73191 5.82306 5.87734 5.94119 6.04834 6.09477 6.18659 6.55043 6.82121 6.92584 7.18451 7.28184 7.53837 7.94221 8.21022 8.73741 8.90471 10.31148 10.68656 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.002539 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.358115 B =11026.841655 C =11805.156136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.346 3.654 4 C -0.448 4.448 5 H 0.083 0.917 6 C 0.078 3.922 7 N -0.738 5.738 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.335 5.335 13 N -0.289 5.289 14 C 0.046 3.954 15 S -0.036 6.036 16 C -0.086 4.086 17 C 0.106 3.894 18 H 0.067 0.933 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.140 4.140 22 C 0.088 3.912 23 C -0.184 4.184 24 C 0.048 3.952 25 O -0.368 6.368 26 C 0.059 3.941 27 O -0.347 6.347 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.279 0.721 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 -21.184 -0.038 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.101 3.899 4 C -0.489 4.489 5 H 0.101 0.899 6 C -0.147 4.147 7 N -0.362 5.362 8 Si 0.744 3.256 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.190 1.190 12 N -0.182 5.182 13 N -0.135 5.135 14 C -0.326 4.326 15 S 0.191 5.809 16 C -0.235 4.235 17 C 0.047 3.953 18 H 0.085 0.915 19 C -0.186 4.186 20 C -0.158 4.158 21 C -0.178 4.178 22 C 0.048 3.952 23 C -0.221 4.221 24 C -0.029 4.029 25 O -0.286 6.286 26 C -0.018 4.018 27 O -0.266 6.266 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.468 -21.396 0.213 21.676 hybrid contribution -0.145 1.310 -0.347 1.364 sum -3.613 -20.085 -0.135 20.408 Atomic orbital electron populations 1.21486 0.78548 1.02602 1.01668 1.46040 1.06090 1.05365 1.64246 1.21608 0.84781 0.88409 0.95085 1.18059 0.94639 0.86490 1.49665 0.89877 1.25789 0.94342 1.01239 0.93321 1.70005 1.00691 1.35027 1.30498 0.86183 0.78937 0.80710 0.79726 1.18969 1.20101 1.18994 1.75439 1.15310 0.97912 1.29516 1.74515 1.15236 1.07596 1.16190 1.25496 0.91515 0.93025 1.22604 1.84618 1.09860 0.90908 1.95480 1.23321 0.98859 0.93914 1.07434 1.21866 0.92022 0.92477 0.88922 0.91500 1.22207 0.97373 0.95118 1.03872 1.21648 1.00399 0.95942 0.97784 1.22078 0.96069 0.99945 0.99680 1.22374 0.94361 0.83102 0.95393 1.23611 0.97028 1.02398 0.99106 1.23373 0.98456 0.96037 0.85071 1.89215 1.25495 1.78973 1.34918 1.23342 0.81222 1.01690 0.95507 1.88033 1.74720 1.20579 1.43277 0.92529 0.90423 0.91553 0.90983 0.88468 0.87895 0.90289 0.90423 0.91095 0.91629 0.90551 0.90770 0.89428 0.89883 0.88968 0.92357 0.90917 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.95 10.88 59.85 0.65 2.60 16 2 N -0.52 -12.90 3.26 -123.18 -0.40 -13.30 16 3 C 0.35 9.91 7.53 -154.81 -1.17 8.75 16 4 C -0.45 -12.13 9.05 -38.32 -0.35 -12.47 16 5 H 0.08 2.03 7.30 -52.48 -0.38 1.65 16 6 C 0.08 2.04 5.50 -17.29 -0.10 1.94 16 7 N -0.74 -20.61 11.94 55.56 0.66 -19.94 16 8 Si 0.92 18.82 29.56 -169.99 -5.03 13.79 16 9 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 12 N -0.33 -10.28 10.48 31.26 0.33 -9.95 16 13 N -0.29 -8.12 11.62 30.89 0.36 -7.76 16 14 C 0.05 1.13 8.09 -87.29 -0.71 0.43 16 15 S -0.04 -0.69 21.42 -107.50 -2.30 -2.99 16 16 C -0.09 -1.40 4.95 37.16 0.18 -1.22 16 17 C 0.11 1.33 2.40 -26.69 -0.06 1.26 16 18 H 0.07 0.79 6.60 -51.93 -0.34 0.45 16 19 C -0.15 -1.46 5.40 -26.53 -0.14 -1.61 16 20 C -0.12 -0.93 5.82 -26.43 -0.15 -1.09 16 21 C -0.14 -1.10 4.59 -26.84 -0.12 -1.22 16 22 C 0.09 0.89 1.04 -89.85 -0.09 0.80 16 23 C -0.18 -1.63 5.45 -25.36 -0.14 -1.77 16 24 C 0.05 0.42 7.64 38.00 0.29 0.71 16 25 O -0.37 -4.46 11.65 -35.23 -0.41 -4.87 16 26 C 0.06 0.60 6.92 37.65 0.26 0.86 16 27 O -0.35 -4.67 9.43 -35.23 -0.33 -5.00 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 30 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 31 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 32 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 33 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 6.99 -51.93 -0.36 0.10 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.90 6.70 -51.93 -0.35 0.55 16 41 H 0.08 0.57 6.80 -51.93 -0.35 0.22 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 45 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -34.69 371.34 -9.95 -44.64 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.78 Total: 1.83 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.64 Total: -2.03 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.95 Total: -50.96 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.74 Total: -9.88 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.30 Total: -2.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.69 -9.95 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412933439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.327 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds