Wall clock time and date at job start Tue Mar 31 2020 22:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38352 * 127.15227 * 2 1 4 4 C 1.39774 * 126.56401 * 359.97438 * 3 2 1 5 5 H 1.08005 * 120.00346 * 0.02562 * 4 3 2 6 6 C 1.40083 * 120.00270 * 179.97438 * 4 3 2 7 7 N 1.30815 * 119.99734 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00431 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47168 * 60.00178 * 8 6 4 10 10 H 1.48493 * 109.47421 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46921 * 300.00386 * 8 6 4 12 12 N 1.33099 * 106.87119 * 179.97438 * 3 2 1 13 13 N 1.28516 * 109.74203 * 359.76440 * 12 3 2 14 14 C 1.32383 * 110.20528 * 0.39126 * 13 12 3 15 15 S 1.76203 * 126.25509 * 179.88104 * 14 13 12 16 16 C 1.80995 * 100.00274 * 359.68460 * 15 14 13 17 17 C 1.52996 * 109.47369 * 180.02562 * 16 15 14 18 18 H 1.08999 * 109.50223 * 60.05085 * 17 16 15 19 19 C 1.53091 * 109.48945 * 180.10087 * 17 16 15 20 20 C 1.53299 * 109.30740 * 178.05529 * 19 17 16 21 21 C 1.53292 * 108.89254 * 302.56717 * 20 19 17 22 22 C 1.52485 * 109.24728 * 55.98055 * 21 20 19 23 23 C 1.54021 * 110.15032 * 66.38587 * 22 21 20 24 24 C 1.54596 * 103.88667 * 118.25378 * 23 22 21 25 25 O 1.44475 * 104.82204 * 23.90159 * 24 23 22 26 26 C 1.44548 * 105.35979 * 319.82666 * 25 24 23 27 27 O 1.42203 * 110.97152 * 303.90079 * 22 21 20 28 28 H 1.09004 * 109.47477 * 270.02060 * 1 2 3 29 29 H 1.09000 * 109.47279 * 30.01906 * 1 2 3 30 30 H 1.08997 * 109.47177 * 150.01631 * 1 2 3 31 31 H 0.97000 * 120.00164 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.46713 * 60.00004 * 16 15 14 33 33 H 1.09000 * 109.47241 * 300.00658 * 16 15 14 34 34 H 1.08997 * 109.49794 * 297.99494 * 19 17 16 35 35 H 1.08996 * 109.50024 * 58.11209 * 19 17 16 36 36 H 1.09001 * 109.62892 * 182.72260 * 20 19 17 37 37 H 1.09000 * 109.54467 * 62.36621 * 20 19 17 38 38 H 1.09002 * 109.51801 * 296.03449 * 21 20 19 39 39 H 1.09001 * 109.51254 * 175.92569 * 21 20 19 40 40 H 1.09001 * 110.54078 * 236.85393 * 23 22 21 41 41 H 1.09003 * 110.54852 * 359.50432 * 23 22 21 42 42 H 1.09000 * 110.37371 * 142.73870 * 24 23 22 43 43 H 1.09008 * 110.36999 * 265.06625 * 24 23 22 44 44 H 1.08999 * 110.38598 * 281.20220 * 26 25 24 45 45 H 1.08996 * 110.38589 * 158.82017 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8594 2.7005 -0.0005 6 6 2.8767 3.4569 0.0001 7 7 4.1475 3.1467 0.0006 8 14 2.3530 5.2500 -0.0013 9 1 1.5409 5.5294 1.2103 10 1 3.5580 6.1177 -0.0010 11 1 1.5435 5.5282 -1.2148 12 7 3.5490 0.6414 0.0006 13 7 3.5369 -0.6437 0.0059 14 6 2.2903 -1.0893 0.0006 15 16 1.7873 -2.7780 0.0018 16 6 3.4058 -3.5881 0.0020 17 6 3.2163 -5.1063 0.0024 18 1 2.6622 -5.4041 -0.8878 19 6 4.5851 -5.7920 0.0051 20 6 4.3906 -7.3117 0.0546 21 6 3.5698 -7.6668 1.2996 22 6 2.2550 -6.8950 1.2718 23 6 1.3806 -7.3784 0.0995 24 6 0.1150 -7.9395 0.7874 25 8 0.0582 -7.2650 2.0638 26 6 1.4255 -7.2112 2.5296 27 8 2.4882 -5.4959 1.1702 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 4.8179 3.8478 0.0007 32 1 3.9609 -3.2906 0.8917 33 1 3.9606 -3.2918 -0.8882 34 1 5.1279 -5.5241 -0.9013 35 1 5.1519 -5.4692 0.8783 36 1 5.3619 -7.8037 0.1055 37 1 3.8595 -7.6407 -0.8386 38 1 4.1309 -7.3981 2.1946 39 1 3.3636 -8.7371 1.3067 40 1 1.1231 -6.5453 -0.5545 41 1 1.8920 -8.1602 -0.4621 42 1 -0.7717 -7.7091 0.1968 43 1 0.2069 -9.0162 0.9311 44 1 1.7220 -8.1729 2.9482 45 1 1.5432 -6.4208 3.2708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412933439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:02 Heat of formation + Delta-G solvation = -49.592696 kcal Electronic energy + Delta-G solvation = -27400.585245 eV Core-core repulsion = 23544.277830 eV Total energy + Delta-G solvation = -3856.307415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.45811 -41.64336 -38.88288 -35.63432 -35.18279 -34.72988 -34.20023 -31.40946 -31.22332 -29.78924 -28.26470 -27.47872 -26.93486 -24.06530 -23.66936 -22.92521 -22.72223 -22.15790 -20.10342 -19.26650 -18.11002 -17.94676 -17.29832 -17.21899 -16.72974 -16.50857 -16.47205 -16.24642 -15.84676 -15.52596 -15.10409 -14.88054 -14.67844 -14.30265 -14.10542 -13.91143 -13.81540 -13.66072 -13.47123 -13.16449 -12.92952 -12.79783 -12.73463 -12.61701 -12.43229 -12.04866 -11.99393 -11.92673 -11.78778 -11.67837 -11.61414 -11.42768 -11.18950 -10.68905 -10.58600 -10.41184 -10.30498 -10.25778 -8.54857 -8.49930 -6.59126 0.47075 1.20077 1.29985 1.40875 1.56572 1.61887 2.18215 2.43851 2.47858 2.51336 3.03586 3.33095 3.45862 3.67454 3.77897 3.89131 3.90051 3.96416 4.06162 4.10101 4.25435 4.26894 4.33497 4.40847 4.42528 4.52554 4.59054 4.68400 4.71379 4.81575 4.84164 4.87604 4.88311 4.89180 4.94864 5.03650 5.08524 5.11746 5.18190 5.31295 5.39634 5.56089 5.83818 6.02344 6.20631 6.31836 6.74786 6.91487 8.40796 8.63291 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.002539 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.358115 B =11026.841655 C =11805.156136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.523 5.523 3 C 0.317 3.683 4 C -0.473 4.473 5 H 0.103 0.897 6 C 0.028 3.972 7 N -0.789 5.789 8 Si 1.008 2.992 9 H -0.254 1.254 10 H -0.271 1.271 11 H -0.253 1.253 12 N -0.389 5.389 13 N -0.332 5.332 14 C 0.053 3.947 15 S -0.001 6.001 16 C -0.083 4.083 17 C 0.115 3.885 18 H 0.078 0.922 19 C -0.145 4.145 20 C -0.115 4.115 21 C -0.136 4.136 22 C 0.080 3.920 23 C -0.179 4.179 24 C 0.043 3.957 25 O -0.401 6.401 26 C 0.056 3.944 27 O -0.378 6.378 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.285 0.715 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 -23.002 -0.565 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.225 5.225 3 C 0.070 3.930 4 C -0.513 4.513 5 H 0.121 0.879 6 C -0.193 4.193 7 N -0.414 5.414 8 Si 0.827 3.173 9 H -0.178 1.178 10 H -0.195 1.195 11 H -0.176 1.176 12 N -0.236 5.236 13 N -0.176 5.176 14 C -0.321 4.321 15 S 0.226 5.774 16 C -0.232 4.232 17 C 0.056 3.944 18 H 0.096 0.904 19 C -0.184 4.184 20 C -0.152 4.152 21 C -0.173 4.173 22 C 0.040 3.960 23 C -0.217 4.217 24 C -0.033 4.033 25 O -0.320 6.320 26 C -0.021 4.021 27 O -0.298 6.298 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.120 0.880 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.854 -23.239 -0.315 23.742 hybrid contribution 0.212 1.660 -0.153 1.680 sum -4.643 -21.579 -0.468 22.078 Atomic orbital electron populations 1.21832 0.75372 1.04435 1.03216 1.46386 1.08087 1.04509 1.63471 1.22052 0.85118 0.89912 0.95910 1.18606 0.96015 0.86469 1.50222 0.87901 1.27015 0.93888 1.06568 0.91792 1.70156 1.02401 1.37101 1.31724 0.84886 0.78703 0.73371 0.80380 1.17816 1.19543 1.17641 1.75295 1.17346 0.99186 1.31757 1.74387 1.17171 1.07100 1.18968 1.26560 0.91077 0.95793 1.18651 1.84474 1.11568 0.86585 1.94734 1.23467 0.96944 0.96642 1.06176 1.21796 0.93849 0.89536 0.89261 0.90389 1.22208 0.95456 0.96979 1.03767 1.21659 1.01584 0.93694 0.98292 1.22078 0.94557 1.01116 0.99564 1.22638 0.95857 0.81605 0.95889 1.23602 0.97033 1.02565 0.98498 1.23579 0.98620 0.97253 0.83875 1.89174 1.26602 1.79787 1.36440 1.23472 0.80730 1.02560 0.95329 1.87979 1.75065 1.23189 1.43529 0.91035 0.89091 0.89251 0.90507 0.90621 0.88301 0.89542 0.91571 0.89314 0.90266 0.91057 0.87984 0.91123 0.87128 0.88752 0.89777 0.88025 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.52 10.88 127.77 1.39 4.91 16 2 N -0.52 -26.59 3.26 -543.63 -1.77 -28.36 16 3 C 0.32 18.76 7.53 133.23 1.00 19.76 16 4 C -0.47 -26.04 9.05 23.09 0.21 -25.83 16 5 H 0.10 5.01 7.30 -2.91 -0.02 4.98 16 6 C 0.03 1.48 5.50 85.29 0.47 1.94 16 7 N -0.79 -45.70 11.94 21.86 0.26 -45.44 16 8 Si 1.01 38.51 29.56 68.60 2.03 40.54 16 9 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 10 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 12 N -0.39 -25.15 10.48 -55.02 -0.58 -25.73 16 13 N -0.33 -19.53 11.62 -56.18 -0.65 -20.18 16 14 C 0.05 2.70 8.09 179.18 1.45 4.14 16 15 S 0.00 -0.03 21.42 -56.49 -1.21 -1.24 16 16 C -0.08 -2.76 4.95 71.98 0.36 -2.40 16 17 C 0.11 2.78 2.40 30.62 0.07 2.85 16 18 H 0.08 1.72 6.60 -2.39 -0.02 1.71 16 19 C -0.14 -2.69 5.40 30.72 0.17 -2.52 16 20 C -0.11 -1.40 5.82 30.79 0.18 -1.22 16 21 C -0.14 -1.71 4.59 30.52 0.14 -1.57 16 22 C 0.08 1.46 1.04 -10.30 -0.01 1.45 16 23 C -0.18 -2.71 5.45 31.48 0.17 -2.54 16 24 C 0.04 0.66 7.64 72.53 0.55 1.21 16 25 O -0.40 -9.26 11.65 -148.98 -1.74 -11.00 16 26 C 0.06 1.06 6.92 72.30 0.50 1.56 16 27 O -0.38 -9.94 9.43 -148.98 -1.41 -11.34 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 3.13 7.53 -2.39 -0.02 3.11 16 30 H 0.09 2.89 7.85 -2.39 -0.02 2.87 16 31 H 0.28 14.88 8.30 -92.71 -0.77 14.11 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.10 3.36 8.14 -2.40 -0.02 3.34 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.79 6.99 -2.39 -0.02 0.77 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 1.32 6.70 -2.39 -0.02 1.30 16 41 H 0.11 1.04 6.80 -2.39 -0.02 1.03 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.10 1.29 7.84 -2.39 -0.02 1.27 16 45 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 Total: -1.00 -80.54 371.34 2.58 -77.96 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.00 Total: 23.05 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.65 Total: 1.74 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -2.74 Total: -119.71 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -3.14 Total: -22.34 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.21 Total: -1.24 kcal Total: -80.54 2.58 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412933439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.364 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds