Wall clock time and date at job start Tue Mar 31 2020 22:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34952 * 126.04212 * 2 1 4 4 C 1.35312 * 107.74564 * 180.15016 * 3 2 1 5 5 C 1.50703 * 126.03634 * 179.87299 * 4 3 2 6 6 H 1.09000 * 109.46421 * 36.39376 * 5 4 3 7 7 C 1.53757 * 109.60672 * 156.64281 * 5 4 3 8 8 S 1.81744 * 108.75152 * 177.74945 * 7 5 4 9 9 O 1.42097 * 109.47317 * 61.38690 * 8 7 5 10 10 C 1.81738 * 102.30650 * 305.34410 * 8 7 5 11 11 C 1.53235 * 108.79701 * 54.54273 * 10 8 7 12 12 N 1.46374 * 109.46996 * 276.39857 * 5 4 3 13 13 C 1.34782 * 119.64449 * 354.91458 * 12 5 4 14 14 O 1.21274 * 119.99768 * 354.02360 * 13 12 5 15 15 C 1.50705 * 119.99836 * 174.03164 * 13 12 5 16 16 C 1.53001 * 109.46696 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46849 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.46883 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00412 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99665 * 180.27299 * 18 17 16 21 21 N 1.31519 * 120.00085 * 359.72657 * 20 18 17 22 22 Si 1.86802 * 119.99986 * 179.72440 * 20 18 17 23 23 H 1.48500 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47177 * 120.00308 * 22 20 18 25 25 H 1.48501 * 109.47401 * 240.00006 * 22 20 18 26 26 C 1.39868 * 107.92226 * 359.60258 * 4 3 2 27 27 N 1.30836 * 108.20394 * 0.24701 * 26 4 3 28 28 H 1.08999 * 109.47171 * 270.26801 * 1 2 3 29 29 H 1.08999 * 109.46525 * 30.26055 * 1 2 3 30 30 H 1.08999 * 109.47100 * 150.25966 * 1 2 3 31 31 H 1.07997 * 126.12384 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.69926 * 57.91568 * 7 5 4 33 33 H 1.08995 * 109.62546 * 297.53725 * 7 5 4 34 34 H 1.09005 * 109.58465 * 294.74645 * 10 8 7 35 35 H 1.09004 * 109.69680 * 174.40175 * 10 8 7 36 36 H 1.09003 * 109.47415 * 182.33558 * 11 10 8 37 37 H 1.09004 * 109.46671 * 62.34744 * 11 10 8 38 38 H 1.08992 * 109.47194 * 59.99539 * 15 13 12 39 39 H 1.08997 * 109.46629 * 299.99313 * 15 13 12 40 40 H 1.08992 * 109.47404 * 60.00000 * 16 15 13 41 41 H 1.09003 * 109.46886 * 299.99351 * 16 15 13 42 42 H 1.09004 * 109.46736 * 59.99642 * 17 16 15 43 43 H 1.09000 * 109.46912 * 300.00187 * 17 16 15 44 44 H 0.97007 * 119.99615 * 179.97438 * 21 20 18 45 45 H 1.08005 * 125.89605 * 180.26326 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0034 5 6 4.7680 1.5451 -0.0073 6 1 4.5825 2.4293 0.6025 7 6 5.9642 0.7660 0.5640 8 16 7.4406 1.8230 0.4866 9 8 7.2337 2.9845 1.2786 10 6 7.4923 2.2883 -1.2694 11 6 6.1454 2.9087 -1.6556 12 7 5.0709 1.9538 -1.3798 13 6 4.3489 1.4496 -2.4002 14 8 3.5277 0.5820 -2.1914 15 6 4.5622 1.9640 -3.8006 16 6 3.6246 1.2303 -4.7616 17 6 3.8408 1.7529 -6.1833 18 6 2.9178 1.0298 -7.1300 19 1 2.2442 0.2735 -6.7552 20 6 2.9370 1.3303 -8.4755 21 7 3.7570 2.2517 -8.9319 22 14 1.7984 0.4285 -9.6502 23 1 0.9810 -0.5524 -8.8921 24 1 0.9029 1.4059 -10.3197 25 1 2.6056 -0.2843 -10.6727 26 6 3.5346 -0.7322 0.0037 27 7 2.2891 -1.1328 0.0057 28 1 -0.3633 0.0048 1.0276 29 1 -0.3632 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 1.9283 2.1193 -0.0004 32 1 6.1297 -0.1365 -0.0245 33 1 5.7630 0.4947 1.6003 34 1 7.6739 1.4018 -1.8771 35 1 8.2892 3.0136 -1.4340 36 1 6.1496 3.1542 -2.7176 37 1 5.9832 3.8161 -1.0737 38 1 5.5961 1.7896 -4.0981 39 1 4.3506 3.0328 -3.8312 40 1 2.5906 1.4043 -4.4643 41 1 3.8367 0.1615 -4.7309 42 1 4.8749 1.5792 -6.4810 43 1 3.6286 2.8216 -6.2137 44 1 3.7708 2.4627 -9.8787 45 1 4.4054 -1.3711 0.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466841602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:59 Heat of formation + Delta-G solvation = -4.649968 kcal Electronic energy + Delta-G solvation = -28056.616232 eV Core-core repulsion = 24202.257679 eV Total energy + Delta-G solvation = -3854.358552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.37474 -40.77377 -37.59888 -36.69879 -36.18194 -34.83309 -33.88548 -32.98225 -31.13915 -30.37408 -29.51914 -27.30256 -26.09503 -24.69833 -24.06665 -22.37090 -21.94007 -21.22339 -19.99156 -18.68795 -18.38334 -17.97000 -17.41381 -16.98214 -16.86007 -16.51198 -16.13797 -16.08433 -15.75520 -15.62212 -15.18322 -14.90439 -14.72638 -14.30470 -14.22554 -14.07965 -13.85933 -13.70212 -13.53161 -13.33462 -13.14800 -13.13014 -13.02939 -12.64810 -12.56553 -12.45580 -12.38556 -12.31810 -11.59545 -11.55924 -11.46109 -11.27505 -10.96406 -10.86513 -10.57302 -10.21985 -9.88850 -9.08157 -8.62613 -8.22958 -6.32906 0.76105 1.07641 1.36445 1.37086 1.50421 1.62745 1.66428 1.77335 1.84407 2.32385 2.39469 2.93684 3.09975 3.52673 3.59907 3.82007 3.93092 3.96475 4.08878 4.14047 4.18307 4.23828 4.26457 4.38711 4.41456 4.43074 4.58713 4.61109 4.70989 4.86450 4.91944 4.93348 5.05866 5.07601 5.12841 5.16274 5.26304 5.49311 5.53748 5.72455 5.83675 5.85644 6.22933 6.25207 6.32771 6.82368 6.88740 7.28602 7.36037 8.88579 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.003397 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.595915 B = 8240.422494 C =10362.263547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.381 5.381 3 C 0.042 3.958 4 C -0.194 4.194 5 C 0.226 3.774 6 H 0.072 0.928 7 C -0.450 4.450 8 S 1.310 4.690 9 O -0.910 6.910 10 C -0.459 4.459 11 C 0.099 3.901 12 N -0.618 5.618 13 C 0.517 3.483 14 O -0.531 6.531 15 C -0.132 4.132 16 C -0.073 4.073 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.047 0.953 20 C 0.006 3.994 21 N -0.928 5.928 22 Si 0.959 3.041 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.273 1.273 26 C 0.071 3.929 27 N -0.334 5.334 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.032 0.968 41 H 0.039 0.961 42 H 0.003 0.997 43 H -0.003 1.003 44 H 0.265 0.735 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -1.797 22.955 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.164 5.164 3 C -0.105 4.105 4 C -0.206 4.206 5 C 0.121 3.879 6 H 0.089 0.911 7 C -0.588 4.588 8 S 1.510 4.490 9 O -0.906 6.906 10 C -0.598 4.598 11 C -0.024 4.024 12 N -0.353 5.353 13 C 0.306 3.694 14 O -0.407 6.407 15 C -0.172 4.172 16 C -0.111 4.111 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.066 0.934 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.784 3.216 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.198 1.198 26 C -0.115 4.115 27 N -0.156 5.156 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.187 0.813 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.015 0.985 44 H 0.074 0.926 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.970 -2.892 23.679 25.151 hybrid contribution -2.144 1.686 -1.755 3.243 sum 5.826 -1.206 21.924 22.717 Atomic orbital electron populations 1.21985 0.73233 1.04822 1.04078 1.48380 1.07191 1.03338 1.57489 1.22231 0.91411 0.93392 1.03430 1.19503 0.93206 0.93942 1.13986 1.19179 0.91829 0.95088 0.81757 0.91054 1.28231 1.10652 1.11528 1.08362 1.69756 1.01529 0.95082 0.82676 1.93012 1.83809 1.51803 1.61977 1.28065 1.00783 1.10588 1.20322 1.21656 0.85299 0.90874 1.04601 1.48271 1.35386 1.45855 1.05778 1.20902 0.80099 0.81468 0.86964 1.90838 1.35410 1.30886 1.83536 1.21750 1.02681 1.01617 0.91103 1.21069 0.97319 0.98416 0.94323 1.19002 0.95575 0.94944 0.91416 1.21673 1.21736 1.21397 0.93595 0.93427 1.25868 0.97272 0.96000 1.00111 1.70070 1.38875 1.32950 1.14889 0.85489 0.78839 0.78630 0.78652 1.19446 1.20080 1.19842 1.23699 0.95021 0.94389 0.98386 1.77120 1.02658 1.09734 1.26086 0.89188 0.88653 0.89946 0.81257 0.83909 0.84994 0.83549 0.84188 0.87708 0.91432 0.87416 0.88815 0.94960 0.94168 0.97909 0.98503 0.92627 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.01 11.47 127.77 1.47 3.47 16 2 N -0.38 -10.90 4.01 -369.58 -1.48 -12.39 16 3 C 0.04 1.15 10.21 83.54 0.85 2.00 16 4 C -0.19 -5.08 3.04 -20.14 -0.06 -5.14 16 5 C 0.23 4.80 3.20 44.53 0.14 4.94 16 6 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 7 C -0.45 -5.72 5.39 72.24 0.39 -5.33 16 8 S 1.31 13.18 13.71 -56.49 -0.77 12.40 16 9 O -0.91 -21.60 18.14 -148.98 -2.70 -24.30 16 10 C -0.46 -4.55 6.65 72.06 0.48 -4.07 16 11 C 0.10 1.71 6.14 86.48 0.53 2.24 16 12 N -0.62 -13.77 2.78 -800.71 -2.23 -15.99 16 13 C 0.52 15.45 7.53 87.66 0.66 16.11 16 14 O -0.53 -19.38 10.87 -3.01 -0.03 -19.42 16 15 C -0.13 -4.20 4.02 29.85 0.12 -4.08 16 16 C -0.07 -3.19 4.44 30.60 0.14 -3.05 16 17 C 0.03 1.46 4.97 29.85 0.15 1.61 16 18 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 19 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 20 C 0.01 0.33 5.46 84.65 0.46 0.79 16 21 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 22 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.07 1.97 9.75 85.24 0.83 2.80 16 27 N -0.33 -10.72 12.58 -57.02 -0.72 -11.44 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.17 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.14 1.34 7.21 -2.39 -0.02 1.32 16 33 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.77 5.73 -2.39 -0.01 1.76 16 37 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.11 2.97 7.63 -2.39 -0.02 2.95 16 39 H 0.09 2.81 7.91 -2.39 -0.02 2.79 16 40 H 0.03 1.49 8.10 -2.39 -0.02 1.48 16 41 H 0.04 1.83 8.10 -2.39 -0.02 1.82 16 42 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 45 H 0.19 4.08 7.23 -2.91 -0.02 4.05 16 Total: -1.00 -88.47 375.03 1.75 -86.72 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.98 Total: 12.57 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 6.39 Total: -19.62 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.14 Total: -95.55 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -2.74 Total: -43.71 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 13.18 SS G_CDS: -0.77 Total: 12.40 kcal Total: -88.47 1.75 -86.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466841602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.073 kcal (2) G-P(sol) polarization free energy of solvation -88.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds