Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47304 * 2 1 4 4 C 1.46497 * 119.99945 * 274.92604 * 3 2 1 5 5 C 1.53001 * 109.47122 * 270.00364 * 4 3 2 6 6 N 1.46904 * 109.46985 * 180.02562 * 5 4 3 7 7 C 1.46907 * 110.99802 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.46923 * 179.97438 * 7 6 5 9 9 O 1.21296 * 120.00111 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.37104 * 120.00313 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99655 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00221 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99963 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99833 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47104 * 90.00331 * 15 13 11 17 17 H 1.48510 * 109.46922 * 210.00208 * 15 13 11 18 18 H 1.48500 * 109.47219 * 330.00082 * 15 13 11 19 19 C 1.34777 * 119.99820 * 94.92941 * 3 2 1 20 20 O 1.21643 * 119.99558 * 185.52383 * 19 3 2 21 21 C 1.47182 * 120.00177 * 5.52050 * 19 3 2 22 22 C 1.36006 * 123.46384 * 54.76734 * 21 19 3 23 23 S 1.70452 * 110.81951 * 180.02562 * 22 21 19 24 24 C 1.75506 * 92.44307 * 359.97438 * 23 22 21 25 25 C 1.32768 * 110.57450 * 0.02562 * 24 23 22 26 26 C 1.50700 * 123.45511 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47410 * 300.00749 * 1 2 3 29 29 H 1.09004 * 109.47024 * 60.00241 * 1 2 3 30 30 H 1.09000 * 109.47410 * 239.99251 * 2 1 3 31 31 H 1.09004 * 109.47024 * 119.99759 * 2 1 3 32 32 H 1.09003 * 109.47241 * 29.99786 * 4 3 2 33 33 H 1.08991 * 109.47125 * 149.99865 * 4 3 2 34 34 H 1.09001 * 109.46772 * 299.99309 * 5 4 3 35 35 H 1.08991 * 109.47528 * 59.99747 * 5 4 3 36 36 H 1.00891 * 111.00111 * 56.04328 * 6 5 4 37 37 H 1.08997 * 109.46985 * 299.99575 * 7 6 5 38 38 H 1.08997 * 109.46994 * 59.99617 * 7 6 5 39 39 H 0.96998 * 120.00140 * 359.97438 * 10 8 7 40 40 H 0.96995 * 119.99816 * 180.02562 * 14 13 11 41 41 H 1.08003 * 124.59254 * 0.04788 * 22 21 19 42 42 H 1.08002 * 124.70792 * 180.26721 * 24 23 22 43 43 H 1.09002 * 109.47175 * 89.97477 * 26 25 24 44 44 H 1.08995 * 109.47376 * 209.97371 * 26 25 24 45 45 H 1.09004 * 109.47597 * 329.97797 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1598 2.1081 -1.2640 5 6 3.5640 1.8820 -1.8280 6 7 3.7060 2.6114 -3.0952 7 6 5.0453 2.4175 -3.6669 8 6 5.1530 3.1783 -4.9632 9 8 4.2073 3.8194 -5.3706 10 7 6.3001 3.1464 -5.6700 11 6 6.3983 3.8390 -6.8492 12 1 5.5562 4.4099 -7.2119 13 6 7.5811 3.8066 -7.5776 14 7 8.6055 3.1116 -7.1365 15 14 7.7150 4.7508 -9.1838 16 1 8.2114 6.1236 -8.9111 17 1 8.6617 4.0531 -10.0907 18 1 6.3785 4.8264 -9.8266 19 6 2.3375 1.9831 1.1629 20 8 2.6466 3.1595 1.1740 21 6 2.3121 1.2169 2.4193 22 6 3.0022 0.0600 2.6063 23 16 2.7417 -0.5540 4.1749 24 6 1.6771 0.7750 4.5997 25 6 1.5516 1.6164 3.5804 26 6 0.7035 2.8611 3.6301 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4193 1.7451 -1.9768 33 1 2.0052 3.1729 -1.0901 34 1 4.3045 2.2451 -1.1153 35 1 3.7186 0.8172 -2.0019 36 1 3.5041 3.5923 -2.9724 37 1 5.7958 2.7842 -2.9667 38 1 5.2104 1.3565 -3.8539 39 1 7.0565 2.6341 -5.3442 40 1 9.4313 3.0893 -7.6448 41 1 3.6306 -0.4063 1.8619 42 1 1.1945 0.8940 5.5585 43 1 1.3057 3.6972 3.9856 44 1 0.3261 3.0837 2.6321 45 1 -0.1348 2.7028 4.3086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482917855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = -37.669815 kcal Electronic energy + Delta-G solvation = -26324.430209 eV Core-core repulsion = 22468.639808 eV Total energy + Delta-G solvation = -3855.790400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55277 -38.30269 -37.71130 -36.51526 -35.25406 -33.82298 -31.77573 -31.29064 -31.09609 -29.20703 -27.98468 -26.14790 -24.75587 -23.98846 -23.22609 -22.24147 -20.44903 -19.23074 -18.59541 -18.00675 -17.86381 -17.15233 -16.64056 -16.14348 -15.52717 -15.13279 -14.98368 -14.52645 -14.28664 -14.17719 -14.12141 -13.78553 -13.65391 -13.58819 -13.38483 -13.21099 -12.93427 -12.73758 -12.44066 -12.33436 -12.17498 -12.11470 -11.97329 -11.50725 -11.48295 -11.40434 -11.35854 -11.10660 -10.96336 -10.37768 -10.20275 -10.11033 -9.49125 -9.26847 -8.97011 -8.68376 -8.43946 -8.06813 -7.94187 -6.39866 -3.80632 0.46914 1.16680 1.50155 1.76714 2.54852 2.83226 3.19489 3.27865 3.34140 3.92919 4.14002 4.23629 4.32696 4.44697 4.63386 4.75652 4.85950 4.91316 4.99561 5.07797 5.11295 5.17958 5.20415 5.28914 5.34738 5.37348 5.42830 5.47300 5.51917 5.54789 5.75453 5.83419 5.84665 5.87653 5.93289 6.00365 6.02576 6.24729 6.33305 7.11178 7.18813 7.57115 7.64897 7.91682 8.08225 8.63193 9.19696 9.56182 10.07673 10.77951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.001813 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.791284 B =15437.715002 C =15670.526449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.603 5.603 4 C 0.117 3.883 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.052 3.948 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.579 3.421 20 O -0.525 6.525 21 C -0.139 4.139 22 C -0.217 4.217 23 S 0.179 5.821 24 C -0.238 4.238 25 C -0.061 4.061 26 C -0.093 4.093 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -11.795 25.532 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.336 5.336 4 C -0.006 4.006 5 C -0.085 4.085 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.365 3.635 20 O -0.401 6.401 21 C -0.157 4.157 22 C -0.355 4.355 23 S 0.446 5.554 24 C -0.373 4.373 25 C -0.072 4.072 26 C -0.152 4.152 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.189 0.811 42 H 0.186 0.814 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.090 -12.562 25.567 31.780 hybrid contribution 0.873 1.710 -0.876 2.111 sum -13.217 -10.851 24.691 30.035 Atomic orbital electron populations 1.22156 0.95532 1.02363 1.02645 1.21811 0.94960 0.82277 1.03793 1.47857 1.64936 1.14726 1.06125 1.21427 0.97374 0.98292 0.83480 1.22258 0.96219 0.99478 0.90498 1.60023 1.27882 1.17322 1.24666 1.21655 0.89586 1.01117 0.95681 1.19788 0.84333 0.86365 0.86827 1.90523 1.38192 1.46497 1.71455 1.41862 1.12456 1.44871 1.20887 1.19712 0.99737 1.26015 0.97352 0.87895 1.25271 0.95094 0.97737 0.99933 1.69615 1.03684 1.41121 1.39953 0.85846 0.78287 0.79108 0.80974 1.20426 1.20939 1.19394 1.17733 0.76739 0.86301 0.82750 1.90836 1.47332 1.15419 1.86496 1.20112 1.03186 0.96579 0.95867 1.25533 1.06374 1.00022 1.03529 1.83057 1.42776 1.24583 1.04953 1.25284 1.07960 1.00337 1.03736 1.19806 0.98540 0.97841 0.91030 1.20487 0.98000 0.93697 1.03058 0.91400 0.92511 0.91956 0.89973 0.89631 0.89153 0.89522 0.95252 0.91123 0.82935 0.93829 0.89639 0.77463 0.91895 0.81116 0.81403 0.90385 0.91328 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.15 0.38 -0.76 16 2 C 0.09 0.70 6.04 -4.04 -0.02 0.68 16 3 N -0.60 -6.30 2.47 -175.05 -0.43 -6.73 16 4 C 0.12 1.38 5.73 -4.04 -0.02 1.36 16 5 C 0.05 0.62 6.01 -3.82 -0.02 0.59 16 6 N -0.67 -11.23 6.13 -115.06 -0.70 -11.93 16 7 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.71 7.82 -10.99 -0.09 10.63 16 9 O -0.58 -16.17 15.78 5.54 0.09 -16.09 16 10 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 11 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 12 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 15 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.58 7.16 6.65 -12.63 -0.08 7.08 16 20 O -0.52 -8.48 16.47 5.24 0.09 -8.40 16 21 C -0.14 -1.39 4.97 -104.63 -0.52 -1.91 16 22 C -0.22 -1.69 8.56 29.93 0.26 -1.44 16 23 S 0.18 1.08 23.02 -107.50 -2.48 -1.39 16 24 C -0.24 -1.62 10.91 28.86 0.31 -1.31 16 25 C -0.06 -0.54 6.01 -104.06 -0.63 -1.16 16 26 C -0.09 -0.76 9.80 36.01 0.35 -0.41 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.09 0.55 4.55 -51.93 -0.24 0.32 16 32 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.09 1.16 7.35 -51.93 -0.38 0.78 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.35 6.23 8.43 -39.30 -0.33 5.90 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.17 1.10 7.70 -52.48 -0.40 0.70 16 42 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.64 7.68 -51.93 -0.40 0.25 16 45 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -34.01 393.76 -8.87 -42.87 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.65 Total: 12.11 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.35 Total: 6.14 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.47 Total: -57.50 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.17 Total: -24.48 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.48 Total: -1.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.01 -8.87 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482917855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.204 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds