Wall clock time and date at job start Tue Mar 31 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47304 * 2 1 4 4 C 1.46497 * 119.99945 * 274.92604 * 3 2 1 5 5 C 1.53001 * 109.47122 * 270.00364 * 4 3 2 6 6 N 1.46904 * 109.46985 * 180.02562 * 5 4 3 7 7 C 1.46907 * 110.99802 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.46923 * 179.97438 * 7 6 5 9 9 O 1.21296 * 120.00111 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.37104 * 120.00313 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99655 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00221 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99963 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99833 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47104 * 90.00331 * 15 13 11 17 17 H 1.48510 * 109.46922 * 210.00208 * 15 13 11 18 18 H 1.48500 * 109.47219 * 330.00082 * 15 13 11 19 19 C 1.34777 * 119.99820 * 94.92941 * 3 2 1 20 20 O 1.21643 * 119.99558 * 185.52383 * 19 3 2 21 21 C 1.47182 * 120.00177 * 5.52050 * 19 3 2 22 22 C 1.36006 * 123.46384 * 54.76734 * 21 19 3 23 23 S 1.70452 * 110.81951 * 180.02562 * 22 21 19 24 24 C 1.75506 * 92.44307 * 359.97438 * 23 22 21 25 25 C 1.32768 * 110.57450 * 0.02562 * 24 23 22 26 26 C 1.50700 * 123.45511 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47410 * 300.00749 * 1 2 3 29 29 H 1.09004 * 109.47024 * 60.00241 * 1 2 3 30 30 H 1.09000 * 109.47410 * 239.99251 * 2 1 3 31 31 H 1.09004 * 109.47024 * 119.99759 * 2 1 3 32 32 H 1.09003 * 109.47241 * 29.99786 * 4 3 2 33 33 H 1.08991 * 109.47125 * 149.99865 * 4 3 2 34 34 H 1.09001 * 109.46772 * 299.99309 * 5 4 3 35 35 H 1.08991 * 109.47528 * 59.99747 * 5 4 3 36 36 H 1.00891 * 111.00111 * 56.04328 * 6 5 4 37 37 H 1.08997 * 109.46985 * 299.99575 * 7 6 5 38 38 H 1.08997 * 109.46994 * 59.99617 * 7 6 5 39 39 H 0.96998 * 120.00140 * 359.97438 * 10 8 7 40 40 H 0.96995 * 119.99816 * 180.02562 * 14 13 11 41 41 H 1.08003 * 124.59254 * 0.04788 * 22 21 19 42 42 H 1.08002 * 124.70792 * 180.26721 * 24 23 22 43 43 H 1.09002 * 109.47175 * 89.97477 * 26 25 24 44 44 H 1.08995 * 109.47376 * 209.97371 * 26 25 24 45 45 H 1.09004 * 109.47597 * 329.97797 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1598 2.1081 -1.2640 5 6 3.5640 1.8820 -1.8280 6 7 3.7060 2.6114 -3.0952 7 6 5.0453 2.4175 -3.6669 8 6 5.1530 3.1783 -4.9632 9 8 4.2073 3.8194 -5.3706 10 7 6.3001 3.1464 -5.6700 11 6 6.3983 3.8390 -6.8492 12 1 5.5562 4.4099 -7.2119 13 6 7.5811 3.8066 -7.5776 14 7 8.6055 3.1116 -7.1365 15 14 7.7150 4.7508 -9.1838 16 1 8.2114 6.1236 -8.9111 17 1 8.6617 4.0531 -10.0907 18 1 6.3785 4.8264 -9.8266 19 6 2.3375 1.9831 1.1629 20 8 2.6466 3.1595 1.1740 21 6 2.3121 1.2169 2.4193 22 6 3.0022 0.0600 2.6063 23 16 2.7417 -0.5540 4.1749 24 6 1.6771 0.7750 4.5997 25 6 1.5516 1.6164 3.5804 26 6 0.7035 2.8611 3.6301 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4193 1.7451 -1.9768 33 1 2.0052 3.1729 -1.0901 34 1 4.3045 2.2451 -1.1153 35 1 3.7186 0.8172 -2.0019 36 1 3.5041 3.5923 -2.9724 37 1 5.7958 2.7842 -2.9667 38 1 5.2104 1.3565 -3.8539 39 1 7.0565 2.6341 -5.3442 40 1 9.4313 3.0893 -7.6448 41 1 3.6306 -0.4063 1.8619 42 1 1.1945 0.8940 5.5585 43 1 1.3057 3.6972 3.9856 44 1 0.3261 3.0837 2.6321 45 1 -0.1348 2.7028 4.3086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482917855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:29 Heat of formation + Delta-G solvation = -61.525777 kcal Electronic energy + Delta-G solvation = -26325.464681 eV Core-core repulsion = 22468.639808 eV Total energy + Delta-G solvation = -3856.824873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.39819 -40.18434 -38.44644 -37.55533 -36.53086 -35.81362 -33.31105 -32.51737 -31.92399 -30.24360 -28.74627 -27.65171 -25.97956 -25.16021 -24.05653 -23.23314 -21.36669 -20.96054 -19.93808 -19.30466 -18.59734 -18.03165 -17.87217 -17.41854 -17.04802 -16.52776 -16.05730 -15.90057 -15.69480 -15.33389 -15.04484 -14.88974 -14.70928 -14.63296 -14.25697 -14.15205 -13.92382 -13.66659 -13.52193 -13.39776 -13.36407 -13.06894 -12.96786 -12.81313 -12.76458 -12.69622 -12.43330 -12.12477 -12.11900 -12.01565 -11.90809 -11.52690 -11.01633 -10.41943 -10.03995 -9.93327 -9.73084 -9.46893 -9.22372 -8.48277 -5.97370 -0.12659 0.64535 0.91321 1.10133 1.37244 1.41071 1.54208 1.71333 1.98980 2.01871 2.28970 2.95233 3.18432 3.47269 3.60398 3.73986 3.96030 4.04403 4.07939 4.20208 4.27099 4.34251 4.36181 4.44284 4.44665 4.54249 4.54911 4.57513 4.70660 4.74554 4.78494 4.82527 4.91428 4.92693 4.94559 5.26658 5.31843 5.39342 5.40902 5.46497 5.80418 6.03442 6.23672 6.28962 6.57468 7.02540 7.10227 7.52979 8.08112 8.69148 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.001813 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.791284 B =15437.715002 C =15670.526449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.598 5.598 4 C 0.123 3.877 5 C 0.057 3.943 6 N -0.675 5.675 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.576 3.424 20 O -0.577 6.577 21 C -0.167 4.167 22 C -0.220 4.220 23 S 0.237 5.763 24 C -0.234 4.234 25 C -0.087 4.087 26 C -0.090 4.090 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.091 0.909 36 H 0.343 0.657 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.184 0.816 42 H 0.193 0.807 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 -14.178 26.724 33.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.329 5.329 4 C -0.001 4.001 5 C -0.074 4.074 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.363 3.637 20 O -0.457 6.457 21 C -0.185 4.185 22 C -0.357 4.357 23 S 0.505 5.495 24 C -0.369 4.369 25 C -0.098 4.098 26 C -0.149 4.149 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.201 0.799 42 H 0.210 0.790 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.925 -15.008 26.782 33.711 hybrid contribution 0.805 2.358 -1.155 2.746 sum -13.120 -12.650 25.627 31.447 Atomic orbital electron populations 1.22122 0.94957 1.03436 1.01756 1.22061 0.95415 0.80513 1.05101 1.47927 1.64171 1.15742 1.05094 1.21252 0.96907 0.97465 0.84429 1.22249 0.96650 0.99866 0.88595 1.60047 1.26920 1.17130 1.26611 1.21527 0.90972 1.01380 0.92730 1.20798 0.83073 0.85576 0.88072 1.90492 1.39387 1.48128 1.72876 1.41924 1.13212 1.45051 1.20724 1.19683 0.99894 1.27682 0.99173 0.90269 1.26079 0.94292 0.98186 1.02823 1.69674 1.04006 1.41338 1.41055 0.84901 0.78217 0.78061 0.76985 1.19676 1.19391 1.19719 1.18199 0.75684 0.85876 0.83911 1.90797 1.49835 1.17714 1.87317 1.20021 1.05477 0.97753 0.95296 1.25782 1.05517 0.99268 1.05175 1.82902 1.40989 1.22854 1.02723 1.25624 1.07365 0.99930 1.04020 1.19890 0.99640 0.98699 0.91552 1.20440 0.98635 0.93552 1.02295 0.89284 0.93469 0.92796 0.88580 0.88295 0.88001 0.91787 0.96276 0.89114 0.83881 0.92170 0.87215 0.76941 0.91242 0.79897 0.79032 0.91504 0.93477 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 10.24 71.98 0.74 -1.26 16 2 C 0.09 1.19 6.04 86.38 0.52 1.71 16 3 N -0.60 -12.35 2.47 -825.97 -2.04 -14.40 16 4 C 0.12 2.93 5.73 86.38 0.50 3.43 16 5 C 0.06 1.46 6.01 86.30 0.52 1.98 16 6 N -0.67 -22.60 6.13 -517.93 -3.17 -25.77 16 7 C 0.07 2.39 6.17 85.55 0.53 2.92 16 8 C 0.44 21.51 7.82 87.65 0.69 22.20 16 9 O -0.62 -35.51 15.78 -3.08 -0.05 -35.56 16 10 N -0.57 -30.09 5.29 -306.99 -1.62 -31.71 16 11 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 12 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 14 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 15 Si 0.99 43.53 29.55 68.60 2.03 45.55 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.58 14.63 6.65 86.59 0.58 15.21 16 20 O -0.58 -19.85 16.47 -4.17 -0.07 -19.92 16 21 C -0.17 -3.25 4.97 -19.87 -0.10 -3.35 16 22 C -0.22 -2.99 8.56 67.30 0.58 -2.41 16 23 S 0.24 2.16 23.02 -56.49 -1.30 0.86 16 24 C -0.23 -2.65 10.91 66.64 0.73 -1.92 16 25 C -0.09 -1.48 6.01 -19.46 -0.12 -1.60 16 26 C -0.09 -1.52 9.80 71.24 0.70 -0.82 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.10 1.03 8.11 -2.39 -0.02 1.01 16 31 H 0.10 1.06 4.55 -2.38 -0.01 1.05 16 32 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 33 H 0.06 1.83 7.35 -2.39 -0.02 1.82 16 34 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.34 12.49 8.43 -89.70 -0.76 11.73 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 40 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.18 1.91 7.70 -2.91 -0.02 1.88 16 42 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 0.97 7.68 -2.39 -0.02 0.95 16 45 H 0.09 1.02 8.13 -2.39 -0.02 1.00 16 Total: -1.00 -75.71 393.76 0.72 -74.99 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.46 Total: 38.71 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 7.13 Total: 17.20 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -6.56 Total: -121.84 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -0.12 Total: -55.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.30 Total: 0.86 kcal Total: -75.71 0.72 -74.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482917855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.464 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds