Wall clock time and date at job start Tue Mar 31 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.36447 * 124.85225 * 265.02761 * 3 2 1 5 5 C 1.34486 * 108.85718 * 179.97438 * 4 3 2 6 6 C 1.46693 * 106.33101 * 359.97438 * 5 4 3 7 7 C 1.47260 * 126.94296 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00376 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99778 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99960 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47002 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46797 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99755 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99987 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47267 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00000 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99990 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99857 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47085 * 59.99772 * 21 19 17 23 23 H 1.48495 * 109.47431 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47122 * 300.00328 * 21 19 17 25 25 C 1.34664 * 124.84622 * 84.72065 * 3 2 1 26 26 C 1.50688 * 125.80403 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.07995 * 125.56728 * 359.97438 * 4 3 2 33 33 H 1.07997 * 126.83634 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00091 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46689 * 299.99712 * 10 9 7 36 36 H 1.08997 * 109.47223 * 59.99390 * 10 9 7 37 37 H 1.08995 * 109.46807 * 299.99744 * 11 10 9 38 38 H 1.09001 * 109.47220 * 59.99566 * 11 10 9 39 39 H 0.96997 * 120.00626 * 0.02562 * 12 11 10 40 40 H 1.09009 * 109.46811 * 299.99538 * 15 13 12 41 41 H 1.09001 * 109.47603 * 59.99685 * 15 13 12 42 42 H 0.97002 * 119.99523 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47751 * 89.99939 * 26 25 3 44 44 H 1.09008 * 109.47215 * 209.99710 * 26 25 3 45 45 H 1.09005 * 109.47241 * 329.99677 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3699 2.0840 -1.1155 5 6 2.7700 3.3137 -0.7464 6 6 2.6521 3.3645 0.7149 7 6 2.9731 4.5049 1.5896 8 8 2.8275 4.4080 2.7933 9 7 3.4283 5.6560 1.0564 10 6 3.7482 6.7903 1.9266 11 6 4.2396 7.9631 1.0758 12 7 4.5590 9.0976 1.9460 13 6 5.0140 10.2487 1.4127 14 8 5.1596 10.3452 0.2125 15 6 5.3431 11.4155 2.3079 16 16 5.9243 12.8030 1.3013 17 6 6.2267 13.9926 2.5656 18 1 6.0423 13.7406 3.5994 19 6 6.7018 15.2535 2.2327 20 7 6.9271 15.5605 0.9727 21 14 7.0217 16.5149 3.5729 22 1 8.0382 15.9863 4.5177 23 1 7.5221 17.7717 2.9605 24 1 5.7598 16.7890 4.3060 25 6 2.1790 2.1405 1.1005 26 6 1.8898 1.7132 2.5163 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.3327 1.7132 -2.1291 33 1 3.1098 4.1064 -1.3964 34 1 3.5441 5.7334 0.0965 35 1 2.8558 7.0895 2.4763 36 1 4.5280 6.4996 2.6305 37 1 5.1319 7.6641 0.5258 38 1 3.4595 8.2536 0.3722 39 1 4.4436 9.0201 2.9059 40 1 4.4505 11.7147 2.8576 41 1 6.1230 11.1249 3.0117 42 1 7.2595 16.4416 0.7401 43 1 2.7848 1.2694 2.9520 44 1 1.5917 2.5815 3.1042 45 1 1.0833 0.9798 2.5169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491122549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:41 Heat of formation + Delta-G solvation = -35.889968 kcal Electronic energy + Delta-G solvation = -25114.341652 eV Core-core repulsion = 21258.628432 eV Total energy + Delta-G solvation = -3855.713220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.80250 -39.53519 -38.98571 -35.82513 -34.61406 -33.81630 -32.41054 -31.94584 -30.56537 -29.67202 -28.00558 -26.56233 -25.46311 -24.39251 -22.96399 -22.19823 -20.69582 -20.11212 -19.35964 -17.94096 -17.71855 -16.50354 -16.37414 -16.05889 -15.80723 -15.58344 -15.39848 -15.08722 -14.83653 -14.78448 -14.01902 -13.95370 -13.77585 -13.73610 -13.44270 -13.30435 -13.13220 -13.02527 -12.71521 -12.54255 -12.38116 -12.24669 -11.97117 -11.93571 -11.79803 -11.59400 -11.02871 -11.01912 -10.75579 -10.06770 -9.81034 -9.43913 -9.31742 -9.04891 -8.97635 -8.92750 -8.50004 -8.22820 -6.48472 -6.19860 -3.90527 1.44909 2.06341 2.30818 2.81166 3.08529 3.21626 3.25459 3.30128 3.36489 3.41707 3.85782 4.04634 4.22335 4.29688 4.35294 4.49468 4.53058 4.57508 4.79941 4.88680 4.93435 4.94434 5.04584 5.15329 5.17142 5.23228 5.29747 5.30347 5.41379 5.52936 5.61284 5.65137 5.73480 5.79947 5.89904 5.91434 6.15926 6.22929 6.41402 6.56049 6.68560 6.84286 7.38587 7.61162 7.67179 8.15482 8.36907 8.58787 9.25421 10.87527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042080 B = 0.001429 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.239649 B =19589.736617 C =20122.764882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 N -0.442 5.442 4 C -0.017 4.017 5 C -0.166 4.166 6 C -0.240 4.240 7 C 0.595 3.405 8 O -0.552 6.552 9 N -0.724 5.724 10 C 0.112 3.888 11 C 0.111 3.889 12 N -0.736 5.736 13 C 0.534 3.466 14 O -0.517 6.517 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.109 3.891 26 C -0.095 4.095 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.269 0.731 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 -34.543 -1.267 36.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.119 5.119 4 C -0.142 4.142 5 C -0.190 4.190 6 C -0.250 4.250 7 C 0.384 3.616 8 O -0.431 6.431 9 N -0.376 5.376 10 C -0.012 4.012 11 C -0.014 4.014 12 N -0.392 5.392 13 C 0.320 3.680 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.008 4.008 26 C -0.153 4.153 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.184 0.816 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.434 -34.633 -2.594 36.889 hybrid contribution 0.066 0.684 1.993 2.108 sum -12.369 -33.949 -0.601 36.137 Atomic orbital electron populations 1.22197 0.94100 1.03213 1.03475 1.21909 0.95755 0.80327 1.04625 1.43771 1.50322 1.11884 1.05902 1.21696 1.07959 0.93277 0.91297 1.22029 1.06507 0.97327 0.93173 1.20044 1.16567 0.94861 0.93479 1.17299 0.75922 0.81445 0.86918 1.90739 1.54292 1.83113 1.14959 1.45543 1.68140 1.12920 1.10967 1.21405 1.01306 0.85301 0.93224 1.21325 1.01208 0.85493 0.93374 1.45806 1.69734 1.13037 1.10599 1.20316 0.75810 0.82790 0.89084 1.90706 1.50928 1.82104 1.15316 1.23532 1.04777 0.99032 1.03060 1.85385 1.84229 1.03456 1.10267 1.22836 1.51414 0.99867 0.94351 0.90933 1.24985 0.94747 0.97586 0.96200 1.70011 1.42276 1.21646 1.16392 0.86222 0.78756 0.79675 0.80841 1.19937 1.20820 1.19932 1.20302 1.00518 0.90498 0.89445 1.20587 1.01774 1.03340 0.89560 0.91658 0.91646 0.90536 0.89144 0.88815 0.81632 0.83598 0.76247 0.90773 0.90761 0.90966 0.90970 0.76496 0.89074 0.89068 0.92138 0.90502 0.88028 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 10.24 37.16 0.38 -0.09 16 2 C 0.10 0.30 6.21 -4.04 -0.03 0.28 16 3 N -0.44 -2.89 2.69 -112.53 -0.30 -3.19 16 4 C -0.02 -0.11 11.33 -16.82 -0.19 -0.30 16 5 C -0.17 -1.31 10.56 -37.50 -0.40 -1.71 16 6 C -0.24 -2.43 6.29 -103.35 -0.65 -3.08 16 7 C 0.59 6.97 7.81 -12.59 -0.10 6.87 16 8 O -0.55 -7.94 14.82 5.25 0.08 -7.86 16 9 N -0.72 -6.99 5.55 -61.43 -0.34 -7.34 16 10 C 0.11 1.10 5.79 -4.04 -0.02 1.08 16 11 C 0.11 1.25 5.79 -4.04 -0.02 1.22 16 12 N -0.74 -9.70 5.56 -60.29 -0.33 -10.03 16 13 C 0.53 9.90 7.85 -10.98 -0.09 9.81 16 14 O -0.52 -11.64 15.86 5.55 0.09 -11.55 16 15 C -0.15 -3.09 6.16 36.00 0.22 -2.86 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.11 0.96 6.89 -81.89 -0.56 0.40 16 26 C -0.10 -0.71 9.31 36.00 0.33 -0.37 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.25 7.49 -51.93 -0.39 -0.14 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 0.21 7.75 -51.93 -0.40 -0.19 16 31 H 0.09 0.14 8.11 -51.93 -0.42 -0.28 16 32 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.15 0.87 7.69 -52.49 -0.40 0.47 16 34 H 0.40 3.09 7.60 -40.82 -0.31 2.78 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.96 6.48 -51.92 -0.34 0.62 16 45 H 0.06 0.32 7.03 -51.93 -0.37 -0.05 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -37.87 396.41 -9.01 -46.88 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.75 Total: 1.78 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.92 Total: -1.77 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.24 Total: -46.06 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.17 Total: -19.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.87 -9.01 -46.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491122549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.991 kcal (2) G-P(sol) polarization free energy of solvation -37.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds