Wall clock time and date at job start Tue Mar 31 2020 22:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.36447 * 124.85225 * 265.02761 * 3 2 1 5 5 C 1.34486 * 108.85718 * 179.97438 * 4 3 2 6 6 C 1.46693 * 106.33101 * 359.97438 * 5 4 3 7 7 C 1.47260 * 126.94296 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00376 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99778 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99960 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47002 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46797 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99755 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99987 * 180.02562 * 13 12 11 16 16 S 1.81003 * 109.47267 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00000 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99990 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99857 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47085 * 59.99772 * 21 19 17 23 23 H 1.48495 * 109.47431 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47122 * 300.00328 * 21 19 17 25 25 C 1.34664 * 124.84622 * 84.72065 * 3 2 1 26 26 C 1.50688 * 125.80403 * 0.02562 * 25 3 2 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.07995 * 125.56728 * 359.97438 * 4 3 2 33 33 H 1.07997 * 126.83634 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00091 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46689 * 299.99712 * 10 9 7 36 36 H 1.08997 * 109.47223 * 59.99390 * 10 9 7 37 37 H 1.08995 * 109.46807 * 299.99744 * 11 10 9 38 38 H 1.09001 * 109.47220 * 59.99566 * 11 10 9 39 39 H 0.96997 * 120.00626 * 0.02562 * 12 11 10 40 40 H 1.09009 * 109.46811 * 299.99538 * 15 13 12 41 41 H 1.09001 * 109.47603 * 59.99685 * 15 13 12 42 42 H 0.97002 * 119.99523 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47751 * 89.99939 * 26 25 3 44 44 H 1.09008 * 109.47215 * 209.99710 * 26 25 3 45 45 H 1.09005 * 109.47241 * 329.99677 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3699 2.0840 -1.1155 5 6 2.7700 3.3137 -0.7464 6 6 2.6521 3.3645 0.7149 7 6 2.9731 4.5049 1.5896 8 8 2.8275 4.4080 2.7933 9 7 3.4283 5.6560 1.0564 10 6 3.7482 6.7903 1.9266 11 6 4.2396 7.9631 1.0758 12 7 4.5590 9.0976 1.9460 13 6 5.0140 10.2487 1.4127 14 8 5.1596 10.3452 0.2125 15 6 5.3431 11.4155 2.3079 16 16 5.9243 12.8030 1.3013 17 6 6.2267 13.9926 2.5656 18 1 6.0423 13.7406 3.5994 19 6 6.7018 15.2535 2.2327 20 7 6.9271 15.5605 0.9727 21 14 7.0217 16.5149 3.5729 22 1 8.0382 15.9863 4.5177 23 1 7.5221 17.7717 2.9605 24 1 5.7598 16.7890 4.3060 25 6 2.1790 2.1405 1.1005 26 6 1.8898 1.7132 2.5163 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.3327 1.7132 -2.1291 33 1 3.1098 4.1064 -1.3964 34 1 3.5441 5.7334 0.0965 35 1 2.8558 7.0895 2.4763 36 1 4.5280 6.4996 2.6305 37 1 5.1319 7.6641 0.5258 38 1 3.4595 8.2536 0.3722 39 1 4.4436 9.0201 2.9059 40 1 4.4505 11.7147 2.8576 41 1 6.1230 11.1249 3.0117 42 1 7.2595 16.4416 0.7401 43 1 2.7848 1.2694 2.9520 44 1 1.5917 2.5815 3.1042 45 1 1.0833 0.9798 2.5169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491122549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:40 Heat of formation + Delta-G solvation = -63.047027 kcal Electronic energy + Delta-G solvation = -25115.519271 eV Core-core repulsion = 21258.628432 eV Total energy + Delta-G solvation = -3856.890839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34506 -40.72109 -40.09800 -36.90681 -35.12919 -34.81091 -34.56758 -32.52116 -31.74035 -30.43738 -29.05965 -27.65051 -27.18026 -24.92950 -23.68555 -22.92668 -21.89124 -20.99215 -20.03648 -19.75424 -18.43332 -17.88729 -17.25953 -17.06269 -16.86418 -16.66869 -16.60749 -16.32762 -15.88270 -15.69828 -15.46974 -14.94780 -14.71258 -14.53907 -14.36405 -14.24567 -14.03145 -13.79367 -13.65526 -13.60015 -13.15644 -13.03337 -12.88481 -12.86103 -12.80587 -12.68681 -12.60578 -12.40971 -12.12278 -11.73882 -11.11575 -11.09883 -10.87935 -10.27072 -10.23422 -10.12169 -9.52576 -9.09045 -8.65153 -8.33273 -6.11267 0.74372 1.25865 1.45120 1.45955 1.52769 1.55837 1.59604 1.81013 2.09613 2.28918 2.57489 2.70707 3.00921 3.33904 3.62125 3.81345 3.82669 4.01323 4.02688 4.02721 4.12071 4.18075 4.32471 4.35162 4.39844 4.42391 4.53636 4.57490 4.69573 4.82438 4.83595 4.87448 4.88284 4.99496 5.06716 5.23798 5.24723 5.33219 5.43238 5.46668 5.82516 6.12984 6.21062 6.37346 6.45015 6.62741 7.08093 7.20453 7.31994 8.75687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042080 B = 0.001429 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.239649 B =19589.736617 C =20122.764882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.438 5.438 4 C -0.011 4.011 5 C -0.183 4.183 6 C -0.273 4.273 7 C 0.589 3.411 8 O -0.587 6.587 9 N -0.717 5.717 10 C 0.123 3.877 11 C 0.117 3.883 12 N -0.711 5.711 13 C 0.537 3.463 14 O -0.562 6.562 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.098 3.902 26 C -0.090 4.090 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.198 0.802 33 H 0.159 0.841 34 H 0.413 0.587 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -36.406 -0.400 38.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.032 4.032 3 N -0.114 5.114 4 C -0.137 4.137 5 C -0.206 4.206 6 C -0.283 4.283 7 C 0.380 3.620 8 O -0.469 6.469 9 N -0.369 5.369 10 C -0.001 4.001 11 C -0.007 4.007 12 N -0.366 5.366 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.282 4.282 16 S 0.078 5.922 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.021 4.021 26 C -0.148 4.148 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.214 0.786 33 H 0.177 0.823 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.256 0.744 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.076 -36.549 -1.715 38.855 hybrid contribution 0.189 1.074 1.698 2.018 sum -12.887 -35.475 -0.017 37.743 Atomic orbital electron populations 1.22168 0.93758 1.04183 1.02468 1.22221 0.95982 0.78669 1.06293 1.44037 1.49270 1.12856 1.05201 1.22227 1.06249 0.92760 0.92469 1.22271 1.07400 0.98649 0.92275 1.20170 1.18494 0.95070 0.94589 1.17644 0.75481 0.82145 0.86750 1.90709 1.56036 1.83797 1.16396 1.45467 1.67523 1.12384 1.11501 1.21245 1.01268 0.84743 0.92860 1.21354 1.01228 0.84961 0.93192 1.45515 1.67466 1.11829 1.11822 1.20025 0.75957 0.83635 0.88109 1.90698 1.53331 1.82992 1.17011 1.23379 1.05921 0.96673 1.02219 1.85545 1.85238 1.07473 1.13991 1.23189 1.51438 1.00361 0.94659 0.89893 1.26106 0.94158 0.99941 0.98792 1.70177 1.43324 1.22325 1.18908 0.85016 0.79138 0.76456 0.77464 1.18707 1.20375 1.18699 1.20502 1.00413 0.90697 0.90493 1.20519 1.02638 1.02837 0.88774 0.92313 0.92966 0.88579 0.88165 0.86560 0.78553 0.82337 0.75092 0.90695 0.90675 0.90985 0.90997 0.74440 0.87042 0.87033 0.91993 0.90269 0.90451 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.24 71.98 0.74 0.16 16 2 C 0.09 0.34 6.21 86.38 0.54 0.87 16 3 N -0.44 -4.94 2.69 -509.93 -1.37 -6.31 16 4 C -0.01 -0.12 11.33 83.12 0.94 0.82 16 5 C -0.18 -2.69 10.56 23.62 0.25 -2.44 16 6 C -0.27 -5.51 6.29 -19.04 -0.12 -5.63 16 7 C 0.59 13.97 7.81 86.61 0.68 14.65 16 8 O -0.59 -17.36 14.82 -4.11 -0.06 -17.43 16 9 N -0.72 -13.56 5.55 -466.51 -2.59 -16.15 16 10 C 0.12 2.30 5.79 86.38 0.50 2.80 16 11 C 0.12 2.49 5.79 86.38 0.50 2.99 16 12 N -0.71 -17.57 5.56 -463.06 -2.57 -20.14 16 13 C 0.54 19.51 7.85 87.66 0.69 20.20 16 14 O -0.56 -25.61 15.86 -3.05 -0.05 -25.66 16 15 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 16 S -0.15 -8.30 20.57 -56.49 -1.16 -9.47 16 17 C -0.55 -31.41 9.50 67.95 0.65 -30.76 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.85 5.49 84.86 0.47 1.32 16 20 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 21 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 C 0.10 1.67 6.89 41.78 0.29 1.95 16 26 C -0.09 -1.33 9.31 71.23 0.66 -0.67 16 27 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.05 0.33 7.49 -2.39 -0.02 0.31 16 29 H 0.10 -0.04 8.14 -2.38 -0.02 -0.05 16 30 H 0.10 0.21 7.75 -2.39 -0.02 0.19 16 31 H 0.12 -0.04 8.11 -2.39 -0.02 -0.06 16 32 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.16 1.72 7.69 -2.91 -0.02 1.70 16 34 H 0.41 6.08 7.60 -92.71 -0.70 5.38 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 7.62 8.47 -92.71 -0.79 6.83 16 40 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.11 3.93 8.14 -2.39 -0.02 3.92 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.54 6.48 -2.38 -0.02 1.53 16 45 H 0.09 0.78 7.03 -2.38 -0.02 0.77 16 Total: -1.00 -84.86 396.41 1.25 -83.61 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.47 Total: 20.02 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 7.21 Total: 1.58 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -6.25 Total: -98.39 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.11 Total: -43.09 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.47 kcal Total: -84.86 1.25 -83.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491122549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.564 kcal (2) G-P(sol) polarization free energy of solvation -84.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds