Wall clock time and date at job start Tue Mar 31 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46874 * 2 1 4 4 C 1.46498 * 119.99741 * 274.92322 * 3 2 1 5 5 C 1.53004 * 109.47217 * 270.00022 * 4 3 2 6 6 N 1.46498 * 109.47606 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99946 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00282 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99648 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47139 * 179.97438 * 9 7 6 11 11 C 1.76194 * 100.00006 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00192 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99959 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99832 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99786 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47043 * 90.00167 * 15 13 11 17 17 H 1.48504 * 109.46579 * 209.99565 * 15 13 11 18 18 H 1.48500 * 109.47427 * 329.99715 * 15 13 11 19 19 C 1.34773 * 120.00468 * 94.92310 * 3 2 1 20 20 O 1.21630 * 119.99722 * 5.72619 * 19 3 2 21 21 C 1.47261 * 120.00167 * 185.72994 * 19 3 2 22 22 C 1.36768 * 126.94352 * 53.85736 * 21 19 3 23 23 N 1.34656 * 108.39775 * 180.02562 * 22 21 19 24 24 H 0.96994 * 124.85009 * 180.02562 * 23 22 21 25 25 C 1.36451 * 110.29743 * 0.25732 * 23 22 21 26 26 C 1.34489 * 108.85416 * 359.56239 * 25 23 22 27 27 C 1.50696 * 126.83264 * 180.18885 * 26 25 23 28 28 H 1.08993 * 109.47565 * 300.00254 * 1 2 3 29 29 H 1.09006 * 109.46956 * 60.00321 * 1 2 3 30 30 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47565 * 239.99746 * 2 1 3 32 32 H 1.08995 * 109.46740 * 119.99229 * 2 1 3 33 33 H 1.09004 * 109.47199 * 29.99786 * 4 3 2 34 34 H 1.08997 * 109.47474 * 150.00148 * 4 3 2 35 35 H 1.09003 * 109.46757 * 300.00522 * 5 4 3 36 36 H 1.09001 * 109.47246 * 59.99524 * 5 4 3 37 37 H 0.97003 * 119.99636 * 359.97438 * 6 5 4 38 38 H 1.09003 * 109.47576 * 299.99801 * 9 7 6 39 39 H 1.09001 * 109.47417 * 59.99409 * 9 7 6 40 40 H 0.97001 * 119.99974 * 179.97438 * 14 13 11 41 41 H 1.08002 * 125.80112 * 0.04262 * 22 21 19 42 42 H 1.08000 * 125.57079 * 179.71522 * 25 23 22 43 43 H 1.09003 * 109.47626 * 270.27853 * 27 26 25 44 44 H 1.09001 * 109.47438 * 30.27531 * 27 26 25 45 45 H 1.08998 * 109.47497 * 150.27001 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1598 2.1081 -1.2641 5 6 3.5640 1.8822 -1.8280 6 7 3.7058 2.6095 -3.0917 7 6 4.8671 2.5558 -3.7735 8 8 5.7950 1.9059 -3.3406 9 6 5.0131 3.3045 -5.0732 10 16 6.6743 3.0370 -5.7403 11 6 6.5705 3.9974 -7.2139 12 1 5.6572 4.5217 -7.4536 13 6 7.6622 4.0794 -8.0671 14 7 8.7751 3.4400 -7.7752 15 14 7.5519 5.0970 -9.6298 16 1 7.9843 6.4889 -9.3456 17 1 8.4346 4.5068 -10.6680 18 1 6.1495 5.1042 -10.1180 19 6 2.3374 1.9833 1.1628 20 8 2.3199 1.3493 2.2007 21 6 2.7070 3.4087 1.1768 22 6 1.9836 4.4506 0.6652 23 7 2.6686 5.5898 0.8804 24 1 2.3720 6.4737 0.6132 25 6 3.8419 5.3223 1.5235 26 6 3.9256 3.9979 1.7420 27 6 5.0504 3.2645 2.4261 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.4193 1.7450 -1.9768 34 1 2.0051 3.1730 -1.0902 35 1 4.3045 2.2452 -1.1151 36 1 3.7188 0.8173 -2.0018 37 1 2.9635 3.1290 -3.4381 38 1 4.2723 2.9426 -5.7862 39 1 4.8591 4.3693 -4.8984 40 1 9.5379 3.4970 -8.3717 41 1 1.0256 4.3729 0.1726 42 1 4.5812 6.0547 1.8124 43 1 5.7965 2.9726 1.6870 44 1 5.5105 3.9162 3.1688 45 1 4.6579 2.3742 2.9174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496661633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:55 Heat of formation + Delta-G solvation = -28.803952 kcal Electronic energy + Delta-G solvation = -26688.724702 eV Core-core repulsion = 22833.318754 eV Total energy + Delta-G solvation = -3855.405948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51835 -39.71273 -39.03481 -36.44303 -34.42382 -32.72387 -32.44816 -31.95246 -30.25613 -29.46098 -27.78515 -26.73069 -25.50310 -24.33416 -23.45901 -21.63002 -20.56319 -20.08339 -18.81808 -18.26986 -17.74136 -16.97058 -16.62803 -16.21478 -15.68203 -15.34817 -14.92893 -14.82223 -14.59981 -14.22900 -14.18767 -13.97827 -13.79822 -13.61284 -13.32091 -13.15854 -12.90311 -12.81711 -12.59171 -12.45126 -12.26961 -12.20129 -12.09631 -11.58184 -11.44040 -11.28859 -11.08311 -11.04420 -10.78690 -10.07416 -9.84073 -9.46995 -9.09070 -9.02759 -8.91649 -8.74616 -8.46586 -8.25087 -6.51847 -6.23410 -3.94093 1.68865 2.22767 2.51781 2.90408 3.03305 3.08925 3.15491 3.20401 3.27147 3.33396 3.75583 4.18469 4.46212 4.58061 4.64844 4.67032 4.83521 4.89454 5.00445 5.10169 5.11693 5.14717 5.15374 5.19138 5.31098 5.45866 5.59823 5.62276 5.63895 5.69185 5.71618 5.86463 5.87867 5.91511 5.93699 6.02116 6.10504 6.30594 6.55138 6.56269 6.69076 7.15611 7.18817 7.57384 7.66379 8.05299 8.33120 8.59752 9.21764 10.84001 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.002378 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.632945 B =11773.240059 C =12600.552954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.607 5.607 4 C 0.098 3.902 5 C 0.107 3.893 6 N -0.737 5.737 7 C 0.532 3.468 8 O -0.514 6.514 9 C -0.152 4.152 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.598 3.402 20 O -0.535 6.535 21 C -0.221 4.221 22 C 0.036 3.964 23 N -0.549 5.549 24 H 0.418 0.582 25 C -0.016 4.016 26 C -0.117 4.117 27 C -0.088 4.088 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.093 2.488 17.195 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.341 5.341 4 C -0.026 4.026 5 C -0.019 4.019 6 N -0.392 5.392 7 C 0.318 3.682 8 O -0.388 6.388 9 C -0.303 4.303 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.387 3.613 20 O -0.412 6.412 21 C -0.232 4.232 22 C -0.099 4.099 23 N -0.143 5.143 24 H 0.254 0.746 25 C -0.144 4.144 26 C -0.123 4.123 27 C -0.145 4.145 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.187 0.813 42 H 0.187 0.813 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.379 1.117 18.421 25.349 hybrid contribution -1.687 2.136 -1.999 3.377 sum -19.066 3.253 16.422 25.373 Atomic orbital electron populations 1.22132 0.95842 1.02338 1.02125 1.21481 0.94208 0.82055 1.03798 1.47746 1.66108 1.14330 1.05906 1.21796 0.96709 0.98470 0.85639 1.21612 0.96856 0.97511 0.85911 1.45831 1.16048 1.53526 1.23792 1.20294 0.81629 0.80925 0.85354 1.90716 1.38718 1.40786 1.68585 1.23522 1.08028 1.02362 0.96398 1.85439 1.06161 1.66234 1.25472 1.22862 1.02335 1.35188 1.08045 0.90954 1.24995 0.94519 0.95752 0.98327 1.70015 1.02801 1.40173 1.37237 0.86171 0.78202 0.79779 0.81356 1.20290 1.20736 1.19704 1.17556 0.75079 0.85879 0.82772 1.90763 1.52335 1.65998 1.32084 1.20197 0.99379 0.92146 1.11480 1.21663 0.98978 0.85083 1.04163 1.41450 1.17065 1.09032 1.46731 0.74570 1.21586 0.90999 0.96958 1.04850 1.20464 0.96111 0.92315 1.03452 1.20204 0.95003 0.99944 0.99345 0.92414 0.92561 0.91456 0.90396 0.89261 0.89807 0.89181 0.91211 0.91491 0.76996 0.89224 0.89306 0.92159 0.81289 0.81334 0.91509 0.91801 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.11 0.92 6.22 -4.04 -0.03 0.90 16 3 N -0.61 -5.88 2.47 -175.02 -0.43 -6.31 16 4 C 0.10 0.78 5.42 -4.04 -0.02 0.76 16 5 C 0.11 1.24 6.00 -4.04 -0.02 1.22 16 6 N -0.74 -9.17 5.56 -60.29 -0.33 -9.50 16 7 C 0.53 9.69 7.85 -10.99 -0.09 9.60 16 8 O -0.51 -11.71 15.86 5.56 0.09 -11.62 16 9 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 10 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 11 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 12 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 15 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.60 7.36 7.49 -12.59 -0.09 7.27 16 20 O -0.54 -8.38 16.30 5.25 0.09 -8.29 16 21 C -0.22 -2.41 5.25 -103.35 -0.54 -2.95 16 22 C 0.04 0.28 9.81 -16.84 -0.17 0.11 16 23 N -0.55 -3.52 5.90 -12.85 -0.08 -3.59 16 24 H 0.42 1.30 8.96 -40.82 -0.37 0.93 16 25 C -0.02 -0.13 11.82 -16.82 -0.20 -0.33 16 26 C -0.12 -1.29 6.36 -102.54 -0.65 -1.94 16 27 C -0.09 -0.94 10.35 36.00 0.37 -0.57 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.09 0.91 7.21 -51.93 -0.37 0.53 16 33 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.09 0.61 4.74 -51.93 -0.25 0.37 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 3.51 8.47 -40.82 -0.35 3.17 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.17 0.78 7.64 -52.49 -0.40 0.38 16 42 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -38.45 397.23 -8.58 -47.02 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.75 Total: 1.54 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.64 Total: -2.28 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.11 Total: -44.65 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.45 -8.58 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496661633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.218 kcal (2) G-P(sol) polarization free energy of solvation -38.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds