Wall clock time and date at job start Tue Mar 31 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47014 * 2 1 4 4 C 1.46491 * 120.00371 * 89.99427 * 3 2 1 5 5 C 1.53005 * 109.47370 * 270.00283 * 4 3 2 6 6 N 1.46497 * 109.47034 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99609 * 180.27834 * 6 5 4 8 8 O 1.21694 * 120.00164 * 354.97354 * 7 6 5 9 9 C 1.46679 * 119.99785 * 174.98211 * 7 6 5 10 10 C 1.37876 * 126.23518 * 4.96408 * 9 7 6 11 11 C 1.39836 * 107.08188 * 180.02562 * 10 9 7 12 12 C 1.35451 * 107.87108 * 359.97438 * 11 10 9 13 13 N 1.35536 * 108.86938 * 359.73813 * 12 11 10 14 14 C 1.46497 * 125.67923 * 180.30011 * 13 12 11 15 15 C 1.34776 * 119.99737 * 269.99813 * 3 2 1 16 16 O 1.21283 * 120.00097 * 179.97438 * 15 3 2 17 17 C 1.50707 * 120.00094 * 359.97438 * 15 3 2 18 18 S 1.80998 * 109.47145 * 180.02562 * 17 15 3 19 19 C 1.76202 * 99.99822 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99746 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00020 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47095 * 59.99798 * 23 21 19 25 25 H 1.48503 * 109.46859 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46745 * 299.99654 * 23 21 19 27 27 H 1.08996 * 109.47379 * 300.00392 * 1 2 3 28 28 H 1.08996 * 109.46960 * 60.00675 * 1 2 3 29 29 H 1.09001 * 109.46576 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47379 * 239.99608 * 2 1 3 31 31 H 1.09003 * 109.46675 * 119.99586 * 2 1 3 32 32 H 1.09004 * 109.47320 * 150.00037 * 4 3 2 33 33 H 1.09006 * 109.47112 * 30.00093 * 4 3 2 34 34 H 1.08998 * 109.46851 * 59.99988 * 5 4 3 35 35 H 1.08992 * 109.46741 * 299.99879 * 5 4 3 36 36 H 0.97001 * 120.00308 * 359.97438 * 6 5 4 37 37 H 1.07997 * 126.45769 * 359.96853 * 10 9 7 38 38 H 1.08005 * 126.06526 * 180.02562 * 11 10 9 39 39 H 1.07995 * 125.56742 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47357 * 274.74220 * 14 13 12 41 41 H 1.08993 * 109.47382 * 34.74618 * 14 13 12 42 42 H 1.09001 * 109.47157 * 154.74738 * 14 13 12 43 43 H 1.08996 * 109.46791 * 300.00193 * 17 15 3 44 44 H 1.09006 * 109.46697 * 59.99796 * 17 15 3 45 45 H 0.97003 * 120.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2686 5 6 0.9873 2.7932 1.7102 6 7 1.2316 3.4844 2.9786 7 6 0.2418 4.1866 3.5648 8 8 -0.8261 4.3229 2.9974 9 6 0.4518 4.7866 4.8867 10 6 1.6320 4.7955 5.5994 11 6 1.3823 5.4692 6.7991 12 6 0.0830 5.8520 6.7982 13 7 -0.4920 5.4487 5.6390 14 6 -1.8866 5.6763 5.2525 15 6 2.2429 2.0165 -1.1672 16 8 2.6468 3.1602 -1.1673 17 6 1.9924 1.3058 -2.4724 18 16 2.3850 2.4145 -3.8481 19 6 2.0115 1.3584 -5.2082 20 1 1.6565 0.3540 -5.0304 21 6 2.1746 1.8169 -6.5081 22 7 2.6078 3.0408 -6.7248 23 14 1.7793 0.6971 -7.9501 24 1 0.3511 0.2954 -7.8879 25 1 2.0351 1.4192 -9.2222 26 1 2.6372 -0.5134 -7.8863 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.0643 2.7987 1.1383 33 1 2.5504 1.3453 2.0284 34 1 0.1854 2.0665 1.8406 35 1 0.6993 3.5197 0.9505 36 1 2.1044 3.4331 3.3987 37 1 2.5719 4.3629 5.2900 38 1 2.0986 5.6526 7.5864 39 1 -0.4128 6.3938 7.5900 40 1 -2.5127 4.8879 5.6702 41 1 -2.2163 6.6426 5.6339 42 1 -1.9685 5.6676 4.1656 43 1 2.6229 0.4186 -2.5298 44 1 0.9445 1.0112 -2.5302 45 1 2.7215 3.3615 -7.6332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528751157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:17 Heat of formation + Delta-G solvation = -19.540921 kcal Electronic energy + Delta-G solvation = -26227.643690 eV Core-core repulsion = 22372.639418 eV Total energy + Delta-G solvation = -3855.004273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65068 -39.84706 -39.08517 -36.20852 -35.00790 -33.14133 -32.42709 -31.49813 -30.09681 -29.53433 -27.66870 -26.79207 -25.48672 -23.69264 -23.35834 -22.23740 -20.80150 -20.08051 -19.09581 -18.17521 -17.72273 -16.85646 -16.35188 -16.04442 -15.91236 -15.64494 -15.20362 -14.89633 -14.80196 -14.26158 -13.90665 -13.87791 -13.74765 -13.65421 -13.57095 -13.32730 -13.05133 -12.70342 -12.60180 -12.55599 -12.34602 -12.28205 -11.85910 -11.85750 -11.50480 -11.06173 -11.04121 -11.00005 -10.76162 -10.22420 -9.81787 -9.42540 -9.32863 -9.06796 -9.05711 -8.70852 -8.52725 -8.23140 -6.50172 -6.21192 -3.92068 1.19485 2.27982 2.43331 2.76741 3.00037 3.15826 3.18409 3.23619 3.28287 3.32842 3.61831 4.20415 4.47543 4.53260 4.63898 4.66879 4.77561 4.87485 4.91115 5.03305 5.06356 5.10495 5.13572 5.19558 5.21805 5.33972 5.34547 5.52654 5.60906 5.72644 5.75346 5.79249 5.83476 5.90367 5.92498 6.06292 6.11872 6.23372 6.42592 6.59455 6.66235 6.87475 7.24156 7.44929 7.59426 7.96379 8.35118 8.49714 9.23847 10.86135 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.001966 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.849508 B =14240.708687 C =14491.423907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.104 3.896 6 N -0.714 5.714 7 C 0.589 3.411 8 O -0.547 6.547 9 C -0.052 4.052 10 C -0.141 4.141 11 C -0.208 4.208 12 C 0.013 3.987 13 N -0.410 5.410 14 C 0.060 3.940 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.403 0.597 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 -1.956 28.483 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.016 4.016 5 C -0.020 4.020 6 N -0.366 5.366 7 C 0.377 3.623 8 O -0.426 6.426 9 C -0.165 4.165 10 C -0.168 4.168 11 C -0.232 4.232 12 C -0.123 4.123 13 N -0.083 5.083 14 C -0.081 4.081 15 C 0.323 3.677 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.238 0.762 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.843 0.004 27.762 28.181 hybrid contribution -0.427 -2.069 -0.591 2.194 sum -5.270 -2.066 27.171 27.755 Atomic orbital electron populations 1.22323 0.95914 1.02349 1.02930 1.21599 0.94555 0.82095 1.03405 1.47891 1.68131 1.14318 1.05046 1.21447 0.96921 0.97294 0.85899 1.21913 0.98616 0.96637 0.84866 1.45458 1.14523 1.52303 1.24298 1.16956 0.83917 0.77935 0.83490 1.90787 1.26040 1.60486 1.65294 1.20044 0.90718 1.09799 0.95978 1.21362 0.96409 1.03640 0.95371 1.20831 0.95734 1.06704 0.99903 1.22046 0.94762 1.05213 0.90278 1.43877 1.09824 1.40373 1.14197 1.22369 0.78336 1.02258 1.05161 1.20410 0.76233 0.86501 0.84603 1.90711 1.43635 1.17369 1.86731 1.23584 1.04874 1.04531 0.97083 1.85413 1.86774 1.17951 0.93345 1.22810 1.51901 1.01451 0.92192 0.90980 1.24991 0.94663 0.95549 0.98372 1.70007 1.42830 1.15639 1.21767 0.86229 0.78955 0.80029 0.80317 1.19940 1.20816 1.19936 0.92333 0.91756 0.91490 0.89657 0.90498 0.89057 0.90155 0.91005 0.90402 0.76242 0.83804 0.83949 0.81441 0.90669 0.89945 0.87220 0.89201 0.89106 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.11 1.07 5.98 -4.04 -0.02 1.04 16 3 N -0.62 -8.14 2.47 -173.68 -0.43 -8.57 16 4 C 0.11 1.17 5.56 -4.04 -0.02 1.15 16 5 C 0.10 1.23 6.00 -4.04 -0.02 1.20 16 6 N -0.71 -7.31 5.54 -61.62 -0.34 -7.65 16 7 C 0.59 7.38 7.77 -12.85 -0.10 7.28 16 8 O -0.55 -8.59 14.57 5.19 0.08 -8.51 16 9 C -0.05 -0.56 6.89 -81.97 -0.56 -1.12 16 10 C -0.14 -1.23 10.36 -39.12 -0.41 -1.63 16 11 C -0.21 -1.62 10.81 -39.98 -0.43 -2.05 16 12 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 13 N -0.41 -3.92 3.16 -120.24 -0.38 -4.30 16 14 C 0.06 0.46 10.76 59.85 0.64 1.11 16 15 C 0.53 9.87 7.69 -10.98 -0.08 9.78 16 16 O -0.51 -11.41 15.44 5.55 0.09 -11.32 16 17 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.06 0.57 6.26 -51.93 -0.33 0.24 16 28 H 0.06 0.77 7.22 -51.93 -0.38 0.39 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.88 6.44 -51.93 -0.33 0.54 16 31 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 33 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 34 H 0.07 0.83 6.26 -51.93 -0.33 0.51 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 2.92 7.37 -40.82 -0.30 2.61 16 37 H 0.14 0.89 7.45 -52.49 -0.39 0.50 16 38 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 1.12 5.99 -51.93 -0.31 0.81 16 43 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 44 H 0.09 1.70 7.19 -51.91 -0.37 1.33 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -37.48 388.58 -8.50 -45.97 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.41 Total: 1.93 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.46 Total: -0.44 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.42 Total: -45.97 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.16 Total: -19.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.48 -8.50 -45.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528751157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.434 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds