Wall clock time and date at job start Tue Mar 31 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47014 * 2 1 4 4 C 1.46491 * 120.00371 * 89.99427 * 3 2 1 5 5 C 1.53005 * 109.47370 * 270.00283 * 4 3 2 6 6 N 1.46497 * 109.47034 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99609 * 180.27834 * 6 5 4 8 8 O 1.21694 * 120.00164 * 354.97354 * 7 6 5 9 9 C 1.46679 * 119.99785 * 174.98211 * 7 6 5 10 10 C 1.37876 * 126.23518 * 4.96408 * 9 7 6 11 11 C 1.39836 * 107.08188 * 180.02562 * 10 9 7 12 12 C 1.35451 * 107.87108 * 359.97438 * 11 10 9 13 13 N 1.35536 * 108.86938 * 359.73813 * 12 11 10 14 14 C 1.46497 * 125.67923 * 180.30011 * 13 12 11 15 15 C 1.34776 * 119.99737 * 269.99813 * 3 2 1 16 16 O 1.21283 * 120.00097 * 179.97438 * 15 3 2 17 17 C 1.50707 * 120.00094 * 359.97438 * 15 3 2 18 18 S 1.80998 * 109.47145 * 180.02562 * 17 15 3 19 19 C 1.76202 * 99.99822 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99746 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00020 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47095 * 59.99798 * 23 21 19 25 25 H 1.48503 * 109.46859 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46745 * 299.99654 * 23 21 19 27 27 H 1.08996 * 109.47379 * 300.00392 * 1 2 3 28 28 H 1.08996 * 109.46960 * 60.00675 * 1 2 3 29 29 H 1.09001 * 109.46576 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47379 * 239.99608 * 2 1 3 31 31 H 1.09003 * 109.46675 * 119.99586 * 2 1 3 32 32 H 1.09004 * 109.47320 * 150.00037 * 4 3 2 33 33 H 1.09006 * 109.47112 * 30.00093 * 4 3 2 34 34 H 1.08998 * 109.46851 * 59.99988 * 5 4 3 35 35 H 1.08992 * 109.46741 * 299.99879 * 5 4 3 36 36 H 0.97001 * 120.00308 * 359.97438 * 6 5 4 37 37 H 1.07997 * 126.45769 * 359.96853 * 10 9 7 38 38 H 1.08005 * 126.06526 * 180.02562 * 11 10 9 39 39 H 1.07995 * 125.56742 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47357 * 274.74220 * 14 13 12 41 41 H 1.08993 * 109.47382 * 34.74618 * 14 13 12 42 42 H 1.09001 * 109.47157 * 154.74738 * 14 13 12 43 43 H 1.08996 * 109.46791 * 300.00193 * 17 15 3 44 44 H 1.09006 * 109.46697 * 59.99796 * 17 15 3 45 45 H 0.97003 * 120.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2686 5 6 0.9873 2.7932 1.7102 6 7 1.2316 3.4844 2.9786 7 6 0.2418 4.1866 3.5648 8 8 -0.8261 4.3229 2.9974 9 6 0.4518 4.7866 4.8867 10 6 1.6320 4.7955 5.5994 11 6 1.3823 5.4692 6.7991 12 6 0.0830 5.8520 6.7982 13 7 -0.4920 5.4487 5.6390 14 6 -1.8866 5.6763 5.2525 15 6 2.2429 2.0165 -1.1672 16 8 2.6468 3.1602 -1.1673 17 6 1.9924 1.3058 -2.4724 18 16 2.3850 2.4145 -3.8481 19 6 2.0115 1.3584 -5.2082 20 1 1.6565 0.3540 -5.0304 21 6 2.1746 1.8169 -6.5081 22 7 2.6078 3.0408 -6.7248 23 14 1.7793 0.6971 -7.9501 24 1 0.3511 0.2954 -7.8879 25 1 2.0351 1.4192 -9.2222 26 1 2.6372 -0.5134 -7.8863 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.0643 2.7987 1.1383 33 1 2.5504 1.3453 2.0284 34 1 0.1854 2.0665 1.8406 35 1 0.6993 3.5197 0.9505 36 1 2.1044 3.4331 3.3987 37 1 2.5719 4.3629 5.2900 38 1 2.0986 5.6526 7.5864 39 1 -0.4128 6.3938 7.5900 40 1 -2.5127 4.8879 5.6702 41 1 -2.2163 6.6426 5.6339 42 1 -1.9685 5.6676 4.1656 43 1 2.6229 0.4186 -2.5298 44 1 0.9445 1.0112 -2.5302 45 1 2.7215 3.3615 -7.6332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528751157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:15 Heat of formation + Delta-G solvation = -45.679475 kcal Electronic energy + Delta-G solvation = -26228.777143 eV Core-core repulsion = 22372.639418 eV Total energy + Delta-G solvation = -3856.137725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.32609 -41.08913 -40.08715 -37.43742 -36.01456 -34.58911 -33.79176 -32.46387 -31.20271 -30.60049 -28.73746 -27.64566 -27.39761 -24.64891 -24.32076 -23.12508 -21.44715 -21.01523 -20.35577 -19.51632 -18.90583 -18.23818 -17.40751 -16.93144 -16.90141 -16.87637 -16.66765 -16.25255 -15.90567 -15.77226 -15.05678 -14.88927 -14.83471 -14.53187 -14.43478 -14.37471 -14.16321 -14.14868 -13.48950 -13.26206 -13.23969 -13.18308 -13.10469 -12.90453 -12.87028 -12.72249 -12.64591 -12.40895 -11.91563 -11.72158 -11.21443 -11.13091 -10.91202 -10.30377 -10.27429 -9.86385 -9.69308 -9.18909 -8.67984 -8.34743 -6.13358 0.44101 1.21976 1.40227 1.43537 1.49762 1.55614 1.66630 1.82181 2.04615 2.27062 2.33101 2.48998 2.99183 3.24686 3.64074 3.70380 3.84464 3.97120 3.97826 4.09585 4.19174 4.19999 4.31897 4.34585 4.39257 4.47366 4.47975 4.54725 4.58972 4.71026 4.72588 4.76040 4.94192 4.99184 5.17677 5.22698 5.27303 5.36673 5.40969 5.57275 5.80557 6.00757 6.18856 6.22152 6.30699 6.44198 7.06112 7.08233 7.11613 8.74230 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.001966 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.849508 B =14240.708687 C =14491.423907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.111 3.889 5 C 0.116 3.884 6 N -0.701 5.701 7 C 0.583 3.417 8 O -0.591 6.591 9 C -0.093 4.093 10 C -0.132 4.132 11 C -0.220 4.220 12 C 0.022 3.978 13 N -0.422 5.422 14 C 0.060 3.940 15 C 0.532 3.468 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.260 1.260 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.419 0.581 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -4.400 31.056 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.336 5.336 4 C -0.012 4.012 5 C -0.010 4.010 6 N -0.353 5.353 7 C 0.373 3.627 8 O -0.474 6.474 9 C -0.206 4.206 10 C -0.159 4.159 11 C -0.243 4.243 12 C -0.114 4.114 13 N -0.095 5.095 14 C -0.081 4.081 15 C 0.320 3.680 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.184 1.184 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.257 0.743 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.219 0.781 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.689 -2.494 30.389 30.850 hybrid contribution -0.492 -1.305 -1.168 1.819 sum -5.181 -3.799 29.221 29.919 Atomic orbital electron populations 1.22294 0.95770 1.03557 1.01597 1.21965 0.94613 0.80071 1.05629 1.47865 1.66194 1.15404 1.04174 1.21639 0.95716 0.98200 0.85621 1.21663 0.99349 0.95567 0.84391 1.45290 1.15000 1.51578 1.23476 1.17371 0.83520 0.77669 0.84190 1.90762 1.27814 1.62260 1.66555 1.19999 0.92295 1.12364 0.95948 1.21755 0.96393 1.02539 0.95236 1.21226 0.96407 1.06553 1.00150 1.22725 0.94947 1.03777 0.89931 1.44121 1.10168 1.40493 1.14764 1.22382 0.78182 1.04144 1.03408 1.20183 0.76286 0.85874 0.85634 1.90694 1.46337 1.19366 1.87474 1.23402 1.05882 1.03200 0.94971 1.85599 1.87524 1.22264 0.97431 1.23152 1.51813 1.01734 0.92580 0.89851 1.26149 0.94172 0.97193 1.01734 1.70183 1.44183 1.17912 1.22506 0.85002 0.79278 0.77869 0.75841 1.18745 1.20445 1.18419 0.92251 0.94538 0.88989 0.89576 0.86173 0.90371 0.85013 0.90548 0.95104 0.74337 0.81682 0.81595 0.78114 0.89833 0.87158 0.90272 0.87058 0.87820 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.24 71.98 0.74 -2.32 16 2 C 0.10 1.66 5.98 86.38 0.52 2.18 16 3 N -0.60 -15.07 2.47 -821.80 -2.03 -17.10 16 4 C 0.11 2.22 5.56 86.38 0.48 2.70 16 5 C 0.12 2.74 6.00 86.38 0.52 3.26 16 6 N -0.70 -14.23 5.54 -467.09 -2.59 -16.82 16 7 C 0.58 15.06 7.77 86.45 0.67 15.73 16 8 O -0.59 -19.85 14.57 -4.33 -0.06 -19.92 16 9 C -0.09 -1.98 6.89 40.35 0.28 -1.70 16 10 C -0.13 -2.06 10.36 22.57 0.23 -1.82 16 11 C -0.22 -2.82 10.81 22.01 0.24 -2.58 16 12 C 0.02 0.28 11.38 83.48 0.95 1.23 16 13 N -0.42 -7.69 3.16 -534.33 -1.69 -9.38 16 14 C 0.06 0.92 10.76 127.77 1.37 2.30 16 15 C 0.53 19.94 7.69 87.66 0.67 20.61 16 16 O -0.56 -26.27 15.44 -3.04 -0.05 -26.31 16 17 C -0.12 -4.98 4.71 71.24 0.34 -4.64 16 18 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 19 C -0.55 -31.36 9.50 67.95 0.65 -30.72 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 23 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 27 H 0.06 1.04 6.26 -2.39 -0.01 1.02 16 28 H 0.04 0.84 7.22 -2.39 -0.02 0.82 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.50 6.44 -2.39 -0.02 1.48 16 31 H 0.12 1.11 7.89 -2.39 -0.02 1.09 16 32 H 0.08 1.84 7.42 -2.39 -0.02 1.82 16 33 H 0.13 1.36 7.89 -2.38 -0.02 1.34 16 34 H 0.08 1.75 6.26 -2.39 -0.01 1.73 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.42 5.50 7.37 -92.71 -0.68 4.82 16 37 H 0.17 1.63 7.45 -2.91 -0.02 1.60 16 38 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.75 5.99 -2.39 -0.01 1.74 16 43 H 0.11 3.98 7.40 -2.40 -0.02 3.96 16 44 H 0.10 3.89 7.19 -2.39 -0.02 3.87 16 45 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -88.27 388.58 3.18 -85.09 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.33 Total: 19.46 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 8.12 Total: 5.38 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -6.02 Total: -99.64 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.11 Total: -46.23 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -88.27 3.18 -85.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528751157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.407 kcal (2) G-P(sol) polarization free energy of solvation -88.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds