Wall clock time and date at job start Tue Mar 31 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46876 * 221.73638 * 3 2 1 5 5 C 1.34772 * 120.00062 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00053 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47404 * 299.99946 * 7 5 4 9 9 C 1.53001 * 109.47103 * 60.00232 * 7 5 4 10 10 N 1.46901 * 109.46870 * 180.02562 * 7 5 4 11 11 C 1.47437 * 111.00223 * 59.15743 * 10 7 5 12 12 C 1.54320 * 107.23257 * 123.25511 * 11 10 7 13 13 C 1.55138 * 103.02210 * 22.28526 * 12 11 10 14 14 H 1.09001 * 110.98913 * 82.43214 * 13 12 11 15 15 N 1.46491 * 110.99739 * 206.25674 * 13 12 11 16 16 C 1.34779 * 119.99871 * 267.27056 * 15 13 12 17 17 O 1.21283 * 119.99975 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00127 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99951 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99763 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99961 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00264 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47129 * 59.99913 * 24 22 20 26 26 H 1.48499 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47151 * 300.00353 * 24 22 20 28 28 C 1.47846 * 110.99547 * 180.02562 * 10 7 5 29 29 H 4.40641 * 5.51448 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46925 * 101.73934 * 3 2 1 31 31 H 1.08999 * 109.47213 * 341.73801 * 3 2 1 32 32 H 0.97002 * 119.99701 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47224 * 59.99604 * 9 7 5 34 34 H 1.08995 * 109.46995 * 179.97438 * 9 7 5 35 35 H 1.09003 * 109.46857 * 299.99815 * 9 7 5 36 36 H 1.08998 * 109.89349 * 242.66131 * 11 10 7 37 37 H 1.08998 * 109.88725 * 3.69037 * 11 10 7 38 38 H 1.09000 * 110.70582 * 140.66816 * 12 11 10 39 39 H 1.08999 * 110.70796 * 263.73072 * 12 11 10 40 40 H 0.97005 * 120.00669 * 87.25830 * 15 13 12 41 41 H 1.08996 * 109.46719 * 299.99929 * 18 16 15 42 42 H 1.09003 * 109.46932 * 59.99259 * 18 16 15 43 43 H 0.96993 * 120.00049 * 180.02562 * 23 22 20 44 44 H 1.08995 * 110.38030 * 332.46412 * 28 10 7 45 45 H 1.09000 * 110.37255 * 94.81067 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0316 0.9195 5 6 4.4588 1.2163 1.0831 6 8 5.2472 0.5295 0.4687 7 6 4.9606 2.2772 2.0285 8 1 4.5965 3.2528 1.7063 9 6 4.4512 1.9838 3.4411 10 7 6.4296 2.2786 2.0277 11 6 6.9570 2.5391 0.6758 12 6 7.8743 3.7762 0.7733 13 6 8.2640 3.8049 2.2747 14 1 9.0902 3.1232 2.4767 15 7 8.5918 5.1659 2.7060 16 6 9.8689 5.5952 2.6695 17 8 10.7467 4.8545 2.2799 18 6 10.2061 6.9956 3.1126 19 16 11.9879 7.2680 2.9476 20 6 12.0969 8.9322 3.5162 21 1 11.2056 9.4549 3.8306 22 6 13.3281 9.5714 3.5599 23 7 14.4145 8.9342 3.1771 24 14 13.4438 11.3355 4.1633 25 1 12.9490 11.4139 5.5613 26 1 14.8586 11.7839 4.1137 27 1 12.6158 12.2109 3.2954 28 6 6.9589 3.3089 2.9466 29 1 -1.0502 -0.0001 -0.0003 30 1 3.0092 0.2099 -1.0062 31 1 3.0098 -0.9751 0.3220 32 1 2.5032 1.5817 1.4100 33 1 4.8152 1.0083 3.7633 34 1 4.8145 2.7509 4.1249 35 1 3.3611 1.9831 3.4413 36 1 7.5300 1.6791 0.3291 37 1 6.1344 2.7377 -0.0112 38 1 8.7583 3.6508 0.1481 39 1 7.3327 4.6805 0.4958 40 1 7.8898 5.7584 3.0178 41 1 9.6695 7.7124 2.4912 42 1 9.9136 7.1273 4.1544 43 1 15.2750 9.3807 3.2081 44 1 6.2483 4.1293 3.0468 45 1 7.1758 2.8724 3.9215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567886223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:41 Heat of formation + Delta-G solvation = -4.484784 kcal Electronic energy + Delta-G solvation = -25895.842580 eV Core-core repulsion = 22041.491190 eV Total energy + Delta-G solvation = -3854.351389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79635 -39.52271 -38.20390 -35.93477 -34.72759 -33.35594 -32.47648 -32.42231 -29.83427 -29.11826 -27.80639 -27.55032 -25.48173 -24.15056 -21.68837 -21.29799 -20.70355 -20.25688 -19.08620 -17.88200 -17.38542 -17.05322 -16.61460 -16.15341 -16.04527 -15.60029 -14.88600 -14.81242 -14.72403 -14.62098 -14.25699 -13.87280 -13.81104 -13.70760 -13.40093 -13.13446 -12.83447 -12.71359 -12.54767 -12.34387 -12.16029 -11.69196 -11.55246 -11.48433 -11.38439 -11.06056 -11.04709 -11.04004 -10.85591 -10.76766 -10.07299 -9.82575 -9.59771 -9.42255 -9.06400 -8.92513 -8.62600 -8.23903 -6.49924 -6.21332 -3.92164 1.79311 2.14494 2.23991 2.82095 3.03029 3.07141 3.23320 3.26735 3.29581 3.53475 3.66265 3.82074 4.18714 4.20504 4.35885 4.50451 4.60467 4.68695 4.94876 4.97148 5.00134 5.02182 5.07580 5.13654 5.14965 5.22125 5.26085 5.30245 5.40516 5.61524 5.63503 5.70186 5.79758 5.87143 5.90898 5.98688 6.12517 6.15429 6.50560 6.57811 6.69586 6.89614 6.97948 7.59083 7.68119 7.76218 8.34939 8.60229 9.23710 10.86025 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035752 B = 0.001634 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.982563 B =17128.735478 C =17406.695348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.732 5.732 5 C 0.520 3.480 6 O -0.513 6.513 7 C 0.061 3.939 8 H 0.069 0.931 9 C -0.144 4.144 10 N -0.505 5.505 11 C 0.058 3.942 12 C -0.159 4.159 13 C 0.140 3.860 14 H 0.108 0.892 15 N -0.731 5.731 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.039 3.961 29 H 0.222 0.778 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.053 0.947 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.182 -14.785 -2.474 33.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.211 4.211 3 C 0.109 3.891 4 N -0.387 5.387 5 C 0.306 3.694 6 O -0.386 6.386 7 C -0.051 4.051 8 H 0.086 0.914 9 C -0.202 4.202 10 N -0.230 5.230 11 C -0.070 4.070 12 C -0.198 4.198 13 C 0.034 3.966 14 H 0.126 0.874 15 N -0.385 5.385 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.089 4.089 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.237 0.763 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.718 -17.035 -3.449 32.717 hybrid contribution -2.242 3.359 0.860 4.129 sum -29.960 -13.676 -2.588 33.035 Atomic orbital electron populations 1.25073 0.95990 0.98621 0.99031 1.22923 0.94263 1.02089 1.01869 1.18053 0.83074 0.92900 0.95048 1.45976 1.07323 1.38776 1.46610 1.20497 0.81590 0.84816 0.82533 1.90754 1.54763 1.46494 1.46629 1.21782 0.90419 0.96635 0.96245 0.91353 1.21838 1.00534 1.03991 0.93803 1.63447 1.04362 1.46847 1.08374 1.22729 0.97642 0.97665 0.88944 1.23277 1.00661 0.98180 0.97711 1.21958 0.97300 0.84649 0.92742 0.87409 1.45906 1.09237 1.14287 1.69052 1.20328 0.81652 0.89078 0.76951 1.90712 1.46665 1.56486 1.44832 1.23534 1.07800 0.95023 1.04051 1.85421 0.94842 1.17004 1.85945 1.22827 0.96477 0.98543 1.50686 0.90998 1.24986 0.94708 0.98880 0.94943 1.70008 0.98682 1.37177 1.44385 0.86229 0.77354 0.82686 0.79250 1.19948 1.20793 1.19966 1.23289 0.95174 0.93139 0.97299 0.76093 0.88999 0.88898 0.76280 0.90824 0.90949 0.91774 0.89255 0.92980 0.89789 0.91308 0.76915 0.89273 0.89196 0.92112 0.92896 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 19.25 29.55 0.57 -0.16 16 2 C -0.21 -1.19 13.46 -37.12 -0.50 -1.69 16 3 C 0.23 1.38 6.15 -6.83 -0.04 1.34 16 4 N -0.73 -4.30 5.43 -63.16 -0.34 -4.64 16 5 C 0.52 4.48 6.53 -10.99 -0.07 4.40 16 6 O -0.51 -6.39 14.72 5.56 0.08 -6.31 16 7 C 0.06 0.44 2.09 -68.86 -0.14 0.30 16 8 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 9 C -0.14 -0.75 8.99 37.16 0.33 -0.42 16 10 N -0.51 -4.90 4.84 -224.66 -1.09 -5.99 16 11 C 0.06 0.62 5.22 -2.84 -0.01 0.61 16 12 C -0.16 -1.81 6.64 -24.91 -0.17 -1.98 16 13 C 0.14 1.67 3.42 -65.78 -0.22 1.45 16 14 H 0.11 1.57 7.54 -51.93 -0.39 1.18 16 15 N -0.73 -9.41 5.20 -51.72 -0.27 -9.68 16 16 C 0.53 9.79 7.85 -10.98 -0.09 9.70 16 17 O -0.51 -11.60 15.50 5.55 0.09 -11.52 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.04 0.35 5.06 -2.28 -0.01 0.34 16 29 H 0.22 0.22 7.80 -54.08 -0.42 -0.20 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 1.47 7.87 -40.82 -0.32 1.14 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.34 7.08 -51.93 -0.37 -0.02 16 35 H 0.06 0.20 7.57 -51.93 -0.39 -0.19 16 36 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 37 H 0.05 0.54 6.86 -51.93 -0.36 0.18 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 3.85 8.57 -40.82 -0.35 3.50 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.05 0.37 7.47 -51.93 -0.39 -0.02 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -36.75 394.29 -8.78 -45.53 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.75 Total: 1.46 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.06 Total: -1.87 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.96 Total: -45.73 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.17 Total: -17.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.75 -8.78 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.046 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds