Wall clock time and date at job start Tue Mar 31 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46876 * 221.73638 * 3 2 1 5 5 C 1.34772 * 120.00062 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00053 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47404 * 299.99946 * 7 5 4 9 9 C 1.53001 * 109.47103 * 60.00232 * 7 5 4 10 10 N 1.46901 * 109.46870 * 180.02562 * 7 5 4 11 11 C 1.47437 * 111.00223 * 59.15743 * 10 7 5 12 12 C 1.54320 * 107.23257 * 123.25511 * 11 10 7 13 13 C 1.55138 * 103.02210 * 22.28526 * 12 11 10 14 14 H 1.09001 * 110.98913 * 82.43214 * 13 12 11 15 15 N 1.46491 * 110.99739 * 206.25674 * 13 12 11 16 16 C 1.34779 * 119.99871 * 267.27056 * 15 13 12 17 17 O 1.21283 * 119.99975 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00127 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99951 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99763 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99961 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00264 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47129 * 59.99913 * 24 22 20 26 26 H 1.48499 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47151 * 300.00353 * 24 22 20 28 28 C 1.47846 * 110.99547 * 180.02562 * 10 7 5 29 29 H 4.40641 * 5.51448 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46925 * 101.73934 * 3 2 1 31 31 H 1.08999 * 109.47213 * 341.73801 * 3 2 1 32 32 H 0.97002 * 119.99701 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47224 * 59.99604 * 9 7 5 34 34 H 1.08995 * 109.46995 * 179.97438 * 9 7 5 35 35 H 1.09003 * 109.46857 * 299.99815 * 9 7 5 36 36 H 1.08998 * 109.89349 * 242.66131 * 11 10 7 37 37 H 1.08998 * 109.88725 * 3.69037 * 11 10 7 38 38 H 1.09000 * 110.70582 * 140.66816 * 12 11 10 39 39 H 1.08999 * 110.70796 * 263.73072 * 12 11 10 40 40 H 0.97005 * 120.00669 * 87.25830 * 15 13 12 41 41 H 1.08996 * 109.46719 * 299.99929 * 18 16 15 42 42 H 1.09003 * 109.46932 * 59.99259 * 18 16 15 43 43 H 0.96993 * 120.00049 * 180.02562 * 23 22 20 44 44 H 1.08995 * 110.38030 * 332.46412 * 28 10 7 45 45 H 1.09000 * 110.37255 * 94.81067 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0316 0.9195 5 6 4.4588 1.2163 1.0831 6 8 5.2472 0.5295 0.4687 7 6 4.9606 2.2772 2.0285 8 1 4.5965 3.2528 1.7063 9 6 4.4512 1.9838 3.4411 10 7 6.4296 2.2786 2.0277 11 6 6.9570 2.5391 0.6758 12 6 7.8743 3.7762 0.7733 13 6 8.2640 3.8049 2.2747 14 1 9.0902 3.1232 2.4767 15 7 8.5918 5.1659 2.7060 16 6 9.8689 5.5952 2.6695 17 8 10.7467 4.8545 2.2799 18 6 10.2061 6.9956 3.1126 19 16 11.9879 7.2680 2.9476 20 6 12.0969 8.9322 3.5162 21 1 11.2056 9.4549 3.8306 22 6 13.3281 9.5714 3.5599 23 7 14.4145 8.9342 3.1771 24 14 13.4438 11.3355 4.1633 25 1 12.9490 11.4139 5.5613 26 1 14.8586 11.7839 4.1137 27 1 12.6158 12.2109 3.2954 28 6 6.9589 3.3089 2.9466 29 1 -1.0502 -0.0001 -0.0003 30 1 3.0092 0.2099 -1.0062 31 1 3.0098 -0.9751 0.3220 32 1 2.5032 1.5817 1.4100 33 1 4.8152 1.0083 3.7633 34 1 4.8145 2.7509 4.1249 35 1 3.3611 1.9831 3.4413 36 1 7.5300 1.6791 0.3291 37 1 6.1344 2.7377 -0.0112 38 1 8.7583 3.6508 0.1481 39 1 7.3327 4.6805 0.4958 40 1 7.8898 5.7584 3.0178 41 1 9.6695 7.7124 2.4912 42 1 9.9136 7.1273 4.1544 43 1 15.2750 9.3807 3.2081 44 1 6.2483 4.1293 3.0468 45 1 7.1758 2.8724 3.9215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567886223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:41 Heat of formation + Delta-G solvation = -33.736574 kcal Electronic energy + Delta-G solvation = -25897.111032 eV Core-core repulsion = 22041.491190 eV Total energy + Delta-G solvation = -3855.619842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54997 -40.68667 -39.22364 -36.52001 -35.75347 -34.57108 -34.06988 -33.16100 -31.16213 -29.87297 -28.86882 -28.04724 -27.62328 -24.80121 -22.58995 -22.25406 -21.72129 -21.12015 -19.83476 -19.53166 -17.99293 -17.97494 -17.83767 -16.94785 -16.91208 -16.85973 -16.38487 -16.27028 -16.09724 -15.30270 -15.25228 -14.86857 -14.67286 -14.56254 -14.38170 -14.28708 -14.12693 -13.67436 -13.46860 -13.21067 -13.15808 -12.99323 -12.85403 -12.62282 -12.55335 -12.40165 -12.28397 -11.81105 -11.79148 -11.72052 -11.47214 -11.11552 -10.97510 -10.74462 -10.25944 -10.16047 -10.12317 -9.35017 -8.65584 -8.33103 -6.11506 1.26803 1.37376 1.45016 1.47941 1.56575 1.57188 1.60645 1.82191 2.14399 2.28991 2.46067 2.94789 3.01051 3.33517 3.34128 3.48834 3.61369 3.80736 3.93057 4.00678 4.08468 4.16562 4.25303 4.29725 4.33659 4.48346 4.51794 4.52752 4.54233 4.77230 4.82989 4.89484 4.93312 4.99465 5.02835 5.16170 5.26838 5.29942 5.42785 5.45000 5.84330 5.90759 6.20861 6.47796 6.51181 6.56401 7.08020 7.18179 7.25784 8.75857 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035752 B = 0.001634 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.982563 B =17128.735478 C =17406.695348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.247 4.247 3 C 0.233 3.767 4 N -0.717 5.717 5 C 0.517 3.483 6 O -0.561 6.561 7 C 0.062 3.938 8 H 0.094 0.906 9 C -0.140 4.140 10 N -0.522 5.522 11 C 0.070 3.930 12 C -0.152 4.152 13 C 0.135 3.865 14 H 0.076 0.924 15 N -0.701 5.701 16 C 0.536 3.464 17 O -0.565 6.565 18 C -0.128 4.128 19 S -0.155 6.155 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.262 1.262 28 C 0.053 3.947 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.416 0.584 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.419 0.581 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.290 -12.948 -1.053 36.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.248 4.248 3 C 0.110 3.890 4 N -0.371 5.371 5 C 0.303 3.697 6 O -0.438 6.438 7 C -0.050 4.050 8 H 0.111 0.889 9 C -0.197 4.197 10 N -0.248 5.248 11 C -0.058 4.058 12 C -0.192 4.192 13 C 0.029 3.971 14 H 0.094 0.906 15 N -0.355 5.355 16 C 0.322 3.678 17 O -0.443 6.443 18 C -0.279 4.279 19 S 0.072 5.928 20 C -0.695 4.695 21 H 0.103 0.897 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.075 4.075 29 H 0.269 0.731 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.257 0.743 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -31.940 -15.188 -2.001 35.424 hybrid contribution -1.147 2.664 0.383 2.925 sum -33.088 -12.524 -1.618 35.416 Atomic orbital electron populations 1.25862 0.96715 0.96769 0.97176 1.22965 0.94442 1.03803 1.03582 1.17935 0.83852 0.92542 0.94646 1.45854 1.06770 1.38421 1.46029 1.20853 0.81960 0.84638 0.82200 1.90744 1.56060 1.48388 1.48619 1.21910 0.88690 0.97157 0.97234 0.88902 1.21859 1.02115 1.03441 0.92326 1.63372 1.06349 1.47489 1.07573 1.22481 0.97281 0.96058 0.89979 1.23191 0.99990 0.99245 0.96785 1.21983 0.98074 0.83247 0.93762 0.90600 1.45551 1.07779 1.14943 1.67201 1.20114 0.82855 0.88189 0.76660 1.90708 1.48619 1.57518 1.47435 1.23363 1.01914 0.96588 1.06038 1.85646 1.02585 1.18016 1.86509 1.23182 0.97242 0.98517 1.50510 0.89747 1.26132 0.94149 1.04012 0.94837 1.70186 0.99390 1.39424 1.45861 0.85003 0.77549 0.76257 0.79178 1.18572 1.20535 1.18631 1.23223 0.93668 0.93865 0.96739 0.73121 0.89747 0.89689 0.74701 0.92471 0.89714 0.89248 0.91970 0.92421 0.92326 0.89701 0.74348 0.87063 0.86873 0.92038 0.89630 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 19.25 74.32 1.43 0.52 16 2 C -0.25 -2.46 13.46 31.13 0.42 -2.04 16 3 C 0.23 2.74 6.15 84.57 0.52 3.26 16 4 N -0.72 -7.46 5.43 -472.13 -2.56 -10.03 16 5 C 0.52 8.42 6.53 87.66 0.57 8.99 16 6 O -0.56 -14.36 14.72 -3.03 -0.04 -14.40 16 7 C 0.06 0.74 2.09 44.17 0.09 0.83 16 8 H 0.09 0.71 8.09 -2.39 -0.02 0.70 16 9 C -0.14 -1.01 8.99 71.98 0.65 -0.37 16 10 N -0.52 -9.43 4.84 -864.68 -4.18 -13.61 16 11 C 0.07 1.51 5.22 86.65 0.45 1.96 16 12 C -0.15 -3.44 6.64 31.78 0.21 -3.23 16 13 C 0.14 3.13 3.42 46.39 0.16 3.29 16 14 H 0.08 2.30 7.54 -2.39 -0.02 2.28 16 15 N -0.70 -16.65 5.20 -435.94 -2.27 -18.91 16 16 C 0.54 19.38 7.85 87.66 0.69 20.07 16 17 O -0.57 -26.43 15.50 -3.04 -0.05 -26.48 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 20 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.76 5.49 84.85 0.47 1.23 16 23 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 24 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 28 C 0.05 0.80 5.06 86.79 0.44 1.23 16 29 H 0.25 -0.39 7.80 -4.41 -0.03 -0.43 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.42 1.99 7.87 -92.71 -0.73 1.26 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.44 7.08 -2.39 -0.02 0.42 16 35 H 0.09 0.20 7.57 -2.39 -0.02 0.19 16 36 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 37 H 0.06 1.16 6.86 -2.39 -0.02 1.15 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.42 6.47 8.57 -92.70 -0.79 5.68 16 41 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.09 0.77 7.47 -2.39 -0.02 0.75 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -84.99 394.29 -1.28 -86.27 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -0.51 Total: 16.60 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 7.18 Total: 0.92 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -8.72 Total: -98.45 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.09 Total: -40.88 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -84.99 -1.28 -86.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.532 kcal (2) G-P(sol) polarization free energy of solvation -84.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds