Wall clock time and date at job start Tue Mar 31 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00175 * 2 1 4 4 N 1.34785 * 119.99340 * 179.97438 * 2 1 3 5 5 C 1.40059 * 119.99671 * 185.27432 * 4 2 1 6 6 C 1.39041 * 119.96280 * 33.37306 * 5 4 2 7 7 C 1.38106 * 120.27093 * 180.02562 * 6 5 4 8 8 C 1.38338 * 120.19511 * 359.97438 * 7 6 5 9 9 F 1.35103 * 120.03740 * 179.97438 * 8 7 6 10 10 C 1.39810 * 119.92072 * 359.97438 * 8 7 6 11 11 C 1.47706 * 120.13045 * 179.97438 * 10 8 7 12 12 O 1.21566 * 120.00006 * 359.97438 * 11 10 8 13 13 N 1.34780 * 119.99592 * 180.02562 * 11 10 8 14 14 C 1.46502 * 119.99524 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46999 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.46638 * 65.00008 * 15 14 13 17 17 C 1.53000 * 109.47426 * 184.99987 * 15 14 13 18 18 O 1.42901 * 109.47084 * 55.00137 * 17 15 14 19 19 N 1.46501 * 109.47304 * 305.00302 * 15 14 13 20 20 C 1.36940 * 119.99860 * 154.99490 * 19 15 14 21 21 H 1.07994 * 120.00113 * 0.02562 * 20 19 15 22 22 C 1.38813 * 119.99518 * 179.97438 * 20 19 15 23 23 N 1.31620 * 119.99752 * 179.72534 * 22 20 19 24 24 Si 1.86798 * 120.00341 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46824 * 269.72149 * 24 22 20 26 26 H 1.48502 * 109.47019 * 29.71644 * 24 22 20 27 27 H 1.48497 * 109.47303 * 149.72274 * 24 22 20 28 28 C 1.38477 * 119.96461 * 213.62959 * 5 4 2 29 29 H 1.09000 * 109.46803 * 270.00429 * 1 2 3 30 30 H 1.09000 * 109.46621 * 30.00288 * 1 2 3 31 31 H 1.08997 * 109.47453 * 150.00211 * 1 2 3 32 32 H 0.96998 * 120.00214 * 5.27790 * 4 2 1 33 33 H 1.08001 * 119.86442 * 0.02562 * 6 5 4 34 34 H 1.08007 * 119.90473 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00333 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47587 * 60.00285 * 14 13 11 37 37 H 1.08994 * 109.47605 * 299.99518 * 14 13 11 38 38 H 1.08996 * 109.47400 * 175.00212 * 17 15 14 39 39 H 1.09003 * 109.47163 * 295.00303 * 17 15 14 40 40 H 0.96699 * 113.99912 * 179.97438 * 18 17 15 41 41 H 0.97001 * 119.99539 * 334.99925 * 19 15 14 42 42 H 0.96997 * 120.00176 * 180.27630 * 23 22 20 43 43 H 1.08004 * 120.09939 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5770 -1.1699 0.1120 6 6 4.2146 -0.1965 0.8729 7 6 5.5910 -0.1927 0.9868 8 6 6.3449 -1.1585 0.3445 9 9 7.6912 -1.1515 0.4576 10 6 5.7120 -2.1418 -0.4218 11 6 6.5125 -3.1749 -1.1101 12 8 7.7241 -3.1710 -1.0112 13 7 5.8996 -4.1212 -1.8485 14 6 6.6936 -5.1456 -2.5316 15 6 5.7612 -6.0898 -3.2932 16 1 5.2562 -5.5394 -4.0871 17 6 6.5780 -7.2306 -3.9035 18 8 7.3313 -7.8793 -2.8769 19 7 4.7651 -6.6412 -2.3713 20 6 3.5572 -7.0755 -2.8482 21 1 3.3390 -7.0120 -3.9040 22 6 2.6136 -7.5985 -1.9747 23 7 1.4505 -8.0109 -2.4323 24 14 2.9912 -7.7091 -0.1486 25 1 3.6203 -9.0211 0.1481 26 1 3.9224 -6.6165 0.2313 27 1 1.7313 -7.5777 0.6263 28 6 4.3211 -2.1388 -0.5400 29 1 -0.3633 0.0001 1.0277 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6988 -2.0056 -0.0764 33 1 3.6312 0.5598 1.3770 34 1 6.0802 0.5665 1.5791 35 1 4.9329 -4.1241 -1.9278 36 1 7.2638 -5.7135 -1.7965 37 1 7.3783 -4.6675 -3.2321 38 1 5.9052 -7.9500 -4.3701 39 1 7.2582 -6.8291 -4.6546 40 1 7.8739 -8.6149 -3.1924 41 1 4.9613 -6.6985 -1.4231 42 1 0.7895 -8.3726 -1.8214 43 1 3.8265 -2.8925 -1.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571448406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:53 Heat of formation + Delta-G solvation = -118.667666 kcal Electronic energy + Delta-G solvation = -29481.897233 eV Core-core repulsion = 25056.381326 eV Total energy + Delta-G solvation = -4425.515907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.81035 -40.83031 -39.66975 -38.17184 -37.24241 -35.10001 -34.89275 -33.70150 -32.03304 -31.19754 -30.98099 -28.91536 -28.51399 -25.76155 -24.08319 -23.37079 -22.71013 -21.39951 -20.29484 -20.01889 -18.55731 -17.77560 -17.57160 -17.52800 -16.93628 -16.43901 -16.20682 -15.81550 -15.61208 -15.29767 -14.95064 -14.70567 -14.43660 -14.19124 -14.17579 -13.63630 -13.48750 -13.30658 -13.28284 -13.06525 -12.91323 -12.81648 -12.73841 -12.48742 -12.31888 -11.69606 -11.61472 -11.08035 -10.94649 -10.77507 -10.56395 -10.30222 -10.20360 -9.77562 -9.73680 -9.50680 -9.36510 -9.09051 -8.77369 -8.28973 -7.44238 -5.92162 -3.28744 0.57324 0.85642 2.18656 2.69284 2.89199 3.26628 3.29811 3.33477 3.38616 3.62049 4.09611 4.32339 4.46275 4.51225 4.55934 4.76585 4.84534 4.95875 5.01123 5.02841 5.14866 5.16780 5.27899 5.37085 5.47948 5.51342 5.75554 5.79316 5.85976 5.87494 5.87697 5.92436 6.09097 6.16965 6.32416 6.55166 6.60906 6.70509 7.02214 7.71184 7.74361 7.81879 8.06775 8.26645 8.36770 9.04735 9.77311 9.97891 11.25272 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.004152 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.169034 B = 6741.457131 C = 9039.517238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.530 6.530 4 N -0.672 5.672 5 C 0.128 3.872 6 C -0.069 4.069 7 C -0.146 4.146 8 C 0.144 3.856 9 F -0.115 7.115 10 C -0.148 4.148 11 C 0.554 3.446 12 O -0.532 6.532 13 N -0.710 5.710 14 C 0.116 3.884 15 C 0.171 3.829 16 H 0.075 0.925 17 C 0.060 3.940 18 O -0.565 6.565 19 N -0.739 5.739 20 C -0.250 4.250 21 H 0.091 0.909 22 C 0.011 3.989 23 N -0.930 5.930 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.276 1.276 27 H -0.292 1.292 28 C -0.082 4.082 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.418 0.582 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.407 0.593 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.032 0.968 40 H 0.367 0.633 41 H 0.366 0.634 42 H 0.260 0.740 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 13.651 3.958 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.406 6.406 4 N -0.318 5.318 5 C 0.034 3.966 6 C -0.090 4.090 7 C -0.166 4.166 8 C 0.122 3.878 9 F -0.094 7.094 10 C -0.153 4.153 11 C 0.340 3.660 12 O -0.410 6.410 13 N -0.362 5.362 14 C -0.009 4.009 15 C 0.061 3.939 16 H 0.093 0.907 17 C -0.022 4.022 18 O -0.369 6.369 19 N -0.383 5.383 20 C -0.380 4.380 21 H 0.109 0.891 22 C -0.186 4.186 23 N -0.577 5.577 24 Si 0.712 3.288 25 H -0.210 1.210 26 H -0.203 1.203 27 H -0.218 1.218 28 C -0.103 4.103 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.256 0.744 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.244 0.756 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.212 0.788 41 H 0.200 0.800 42 H 0.070 0.930 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.278 14.798 4.243 15.562 hybrid contribution -0.160 -1.268 0.785 1.500 sum 2.118 13.531 5.028 14.589 Atomic orbital electron populations 1.21905 0.90328 1.05669 1.05298 1.21074 0.91068 0.82920 0.74755 1.90741 1.70602 1.31230 1.48012 1.43718 1.04796 1.10516 1.72819 1.17559 0.83351 0.97670 0.98063 1.21125 0.93712 0.98097 0.96031 1.21006 0.93770 0.99489 1.02312 1.17657 0.77795 0.95081 0.97224 1.91588 1.28209 1.95695 1.93861 1.19888 0.93635 0.98504 1.03253 1.17908 0.87332 0.81398 0.79387 1.90817 1.13341 1.74556 1.62278 1.45903 1.11549 1.28795 1.49959 1.21647 0.93872 0.88487 0.96845 1.20585 0.88973 0.91138 0.93247 0.90712 1.22978 0.93386 0.96303 0.89504 1.86517 1.62980 1.50548 1.36830 1.42754 1.14656 1.75501 1.05362 1.19058 0.89574 1.34249 0.95127 0.89119 1.24634 0.96033 1.00506 0.97384 1.69701 1.06460 1.47389 1.34131 0.86609 0.76881 0.78477 0.86846 1.20973 1.20251 1.21831 1.21073 0.91903 0.99348 0.97970 0.88297 0.88389 0.89435 0.74450 0.83530 0.83675 0.75605 0.90373 0.91397 0.92723 0.95024 0.78793 0.80045 0.92966 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.31 36.01 0.37 -0.58 16 2 C 0.51 4.91 7.68 -10.98 -0.08 4.82 16 3 O -0.53 -7.04 14.78 5.55 0.08 -6.95 16 4 N -0.67 -6.21 5.34 -9.88 -0.05 -6.26 16 5 C 0.13 1.48 6.27 -83.71 -0.53 0.96 16 6 C -0.07 -0.80 8.65 -39.33 -0.34 -1.14 16 7 C -0.15 -1.70 10.01 -39.59 -0.40 -2.10 16 8 C 0.14 2.07 7.28 -38.96 -0.28 1.78 16 9 F -0.12 -1.88 15.54 2.25 0.03 -1.84 16 10 C -0.15 -2.19 5.88 -104.94 -0.62 -2.81 16 11 C 0.55 9.54 7.77 -12.39 -0.10 9.44 16 12 O -0.53 -10.78 15.33 5.31 0.08 -10.70 16 13 N -0.71 -11.50 5.34 -61.29 -0.33 -11.82 16 14 C 0.12 1.92 5.12 -4.04 -0.02 1.90 16 15 C 0.17 2.98 2.84 -67.93 -0.19 2.79 16 16 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 17 C 0.06 0.95 6.86 37.16 0.25 1.20 16 18 O -0.57 -9.19 12.64 -35.23 -0.45 -9.63 16 19 N -0.74 -15.81 4.31 -53.42 -0.23 -16.04 16 20 C -0.25 -6.34 10.41 -15.06 -0.16 -6.50 16 21 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 22 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 23 N -0.93 -27.02 13.97 55.49 0.78 -26.24 16 24 Si 0.88 20.85 27.74 -169.99 -4.72 16.14 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.19 6.51 56.52 0.37 -5.82 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C -0.08 -1.03 9.45 -38.99 -0.37 -1.39 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.42 2.90 8.82 -40.82 -0.36 2.54 16 33 H 0.15 1.63 6.40 -52.49 -0.34 1.29 16 34 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.41 6.26 6.17 -40.82 -0.25 6.01 16 36 H 0.08 1.45 7.39 -51.93 -0.38 1.06 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.37 4.21 9.12 45.56 0.42 4.63 16 41 H 0.37 8.18 5.65 -40.82 -0.23 7.95 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.15 1.66 6.40 -52.48 -0.34 1.32 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -35.22 371.04 -6.21 -41.44 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -4.45 Total: 17.76 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -2.55 Total: 8.57 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.16 Total: -60.36 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.28 Total: -27.29 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.84 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.72 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.22 -6.21 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571448406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.232 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds