Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00175 * 2 1 4 4 N 1.34785 * 119.99340 * 179.97438 * 2 1 3 5 5 C 1.40059 * 119.99671 * 185.27432 * 4 2 1 6 6 C 1.39041 * 119.96280 * 33.37306 * 5 4 2 7 7 C 1.38106 * 120.27093 * 180.02562 * 6 5 4 8 8 C 1.38338 * 120.19511 * 359.97438 * 7 6 5 9 9 F 1.35103 * 120.03740 * 179.97438 * 8 7 6 10 10 C 1.39810 * 119.92072 * 359.97438 * 8 7 6 11 11 C 1.47706 * 120.13045 * 179.97438 * 10 8 7 12 12 O 1.21566 * 120.00006 * 359.97438 * 11 10 8 13 13 N 1.34780 * 119.99592 * 180.02562 * 11 10 8 14 14 C 1.46502 * 119.99524 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46999 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.46638 * 65.00008 * 15 14 13 17 17 C 1.53000 * 109.47426 * 184.99987 * 15 14 13 18 18 O 1.42901 * 109.47084 * 55.00137 * 17 15 14 19 19 N 1.46501 * 109.47304 * 305.00302 * 15 14 13 20 20 C 1.36940 * 119.99860 * 154.99490 * 19 15 14 21 21 H 1.07994 * 120.00113 * 0.02562 * 20 19 15 22 22 C 1.38813 * 119.99518 * 179.97438 * 20 19 15 23 23 N 1.31620 * 119.99752 * 179.72534 * 22 20 19 24 24 Si 1.86798 * 120.00341 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46824 * 269.72149 * 24 22 20 26 26 H 1.48502 * 109.47019 * 29.71644 * 24 22 20 27 27 H 1.48497 * 109.47303 * 149.72274 * 24 22 20 28 28 C 1.38477 * 119.96461 * 213.62959 * 5 4 2 29 29 H 1.09000 * 109.46803 * 270.00429 * 1 2 3 30 30 H 1.09000 * 109.46621 * 30.00288 * 1 2 3 31 31 H 1.08997 * 109.47453 * 150.00211 * 1 2 3 32 32 H 0.96998 * 120.00214 * 5.27790 * 4 2 1 33 33 H 1.08001 * 119.86442 * 0.02562 * 6 5 4 34 34 H 1.08007 * 119.90473 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00333 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47587 * 60.00285 * 14 13 11 37 37 H 1.08994 * 109.47605 * 299.99518 * 14 13 11 38 38 H 1.08996 * 109.47400 * 175.00212 * 17 15 14 39 39 H 1.09003 * 109.47163 * 295.00303 * 17 15 14 40 40 H 0.96699 * 113.99912 * 179.97438 * 18 17 15 41 41 H 0.97001 * 119.99539 * 334.99925 * 19 15 14 42 42 H 0.96997 * 120.00176 * 180.27630 * 23 22 20 43 43 H 1.08004 * 120.09939 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5770 -1.1699 0.1120 6 6 4.2146 -0.1965 0.8729 7 6 5.5910 -0.1927 0.9868 8 6 6.3449 -1.1585 0.3445 9 9 7.6912 -1.1515 0.4576 10 6 5.7120 -2.1418 -0.4218 11 6 6.5125 -3.1749 -1.1101 12 8 7.7241 -3.1710 -1.0112 13 7 5.8996 -4.1212 -1.8485 14 6 6.6936 -5.1456 -2.5316 15 6 5.7612 -6.0898 -3.2932 16 1 5.2562 -5.5394 -4.0871 17 6 6.5780 -7.2306 -3.9035 18 8 7.3313 -7.8793 -2.8769 19 7 4.7651 -6.6412 -2.3713 20 6 3.5572 -7.0755 -2.8482 21 1 3.3390 -7.0120 -3.9040 22 6 2.6136 -7.5985 -1.9747 23 7 1.4505 -8.0109 -2.4323 24 14 2.9912 -7.7091 -0.1486 25 1 3.6203 -9.0211 0.1481 26 1 3.9224 -6.6165 0.2313 27 1 1.7313 -7.5777 0.6263 28 6 4.3211 -2.1388 -0.5400 29 1 -0.3633 0.0001 1.0277 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6988 -2.0056 -0.0764 33 1 3.6312 0.5598 1.3770 34 1 6.0802 0.5665 1.5791 35 1 4.9329 -4.1241 -1.9278 36 1 7.2638 -5.7135 -1.7965 37 1 7.3783 -4.6675 -3.2321 38 1 5.9052 -7.9500 -4.3701 39 1 7.2582 -6.8291 -4.6546 40 1 7.8739 -8.6149 -3.1924 41 1 4.9613 -6.6985 -1.4231 42 1 0.7895 -8.3726 -1.8214 43 1 3.8265 -2.8925 -1.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571448406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = -147.520068 kcal Electronic energy + Delta-G solvation = -29483.148367 eV Core-core repulsion = 25056.381326 eV Total energy + Delta-G solvation = -4426.767041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.95553 -41.74247 -40.87453 -39.22775 -38.61922 -36.48428 -35.78225 -35.33291 -33.58791 -32.54606 -31.68998 -30.50117 -29.28746 -27.02422 -25.40900 -24.98623 -23.67019 -22.38656 -21.74210 -21.14571 -20.00626 -19.21782 -18.57819 -18.46173 -18.27641 -17.46844 -17.35376 -17.03784 -16.75871 -16.54840 -16.17947 -16.04195 -15.81569 -15.43402 -15.04156 -14.96331 -14.84990 -14.57082 -14.43920 -14.33720 -14.24548 -14.07418 -13.67687 -13.30910 -13.21273 -13.01127 -12.85443 -12.68398 -12.60148 -12.32934 -11.89221 -11.75824 -11.49104 -11.30288 -11.05715 -10.92613 -10.74675 -10.41099 -10.08845 -9.32320 -9.24640 -7.98398 -5.31384 -0.49022 -0.10090 1.37958 1.38090 1.45591 1.48401 1.73831 1.94191 2.07261 2.50120 2.53564 3.06555 3.32342 3.40279 3.47418 3.53173 3.69779 3.77093 3.92328 3.95234 4.02023 4.26060 4.36803 4.50563 4.53130 4.54187 4.61483 4.66829 4.76258 4.82243 4.93492 4.96152 4.98057 5.09632 5.15577 5.21717 5.35938 5.67179 5.80642 6.24534 6.32192 6.40623 7.01631 7.02173 7.06152 7.10223 7.84315 8.04250 9.22189 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.004152 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.169034 B = 6741.457131 C = 9039.517238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.570 6.570 4 N -0.665 5.665 5 C 0.130 3.870 6 C -0.067 4.067 7 C -0.133 4.133 8 C 0.121 3.879 9 F -0.132 7.132 10 C -0.164 4.164 11 C 0.552 3.448 12 O -0.569 6.569 13 N -0.705 5.705 14 C 0.125 3.875 15 C 0.167 3.833 16 H 0.084 0.916 17 C 0.065 3.935 18 O -0.584 6.584 19 N -0.741 5.741 20 C -0.222 4.222 21 H 0.069 0.931 22 C -0.047 4.047 23 N -0.976 5.976 24 Si 0.940 3.060 25 H -0.297 1.297 26 H -0.257 1.257 27 H -0.292 1.292 28 C -0.080 4.080 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.430 0.570 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.411 0.589 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.388 0.612 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 14.616 4.547 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.302 3.698 3 O -0.449 6.449 4 N -0.312 5.312 5 C 0.035 3.965 6 C -0.087 4.087 7 C -0.152 4.152 8 C 0.100 3.900 9 F -0.110 7.110 10 C -0.168 4.168 11 C 0.340 3.660 12 O -0.449 6.449 13 N -0.357 5.357 14 C 0.001 3.999 15 C 0.058 3.942 16 H 0.102 0.898 17 C -0.016 4.016 18 O -0.391 6.391 19 N -0.384 5.384 20 C -0.353 4.353 21 H 0.087 0.913 22 C -0.240 4.240 23 N -0.627 5.627 24 Si 0.770 3.230 25 H -0.224 1.224 26 H -0.182 1.182 27 H -0.219 1.219 28 C -0.101 4.101 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.270 0.730 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.249 0.751 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.196 0.804 42 H 0.066 0.934 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.977 15.753 4.809 16.589 hybrid contribution -0.040 -1.533 0.515 1.618 sum 1.938 14.220 5.325 15.308 Atomic orbital electron populations 1.21955 0.86916 1.06736 1.06819 1.21844 0.92580 0.82102 0.73319 1.90724 1.71671 1.32573 1.49908 1.43786 1.03825 1.11348 1.72260 1.17690 0.84590 0.97010 0.97215 1.21303 0.93708 0.98020 0.95713 1.21228 0.93688 0.98925 1.01359 1.17939 0.77350 0.96188 0.98491 1.91541 1.29467 1.95891 1.94131 1.19793 0.94362 0.98490 1.04193 1.18263 0.87089 0.81639 0.79026 1.90789 1.14920 1.75569 1.63661 1.45870 1.11703 1.28442 1.49645 1.21517 0.93640 0.88209 0.96503 1.20817 0.88613 0.91872 0.92887 0.89791 1.22809 0.93746 0.95213 0.89833 1.86463 1.63393 1.51719 1.37538 1.42724 1.14303 1.75569 1.05768 1.19011 0.90465 1.31842 0.93982 0.91323 1.25213 0.96120 1.01575 1.01075 1.69840 1.07725 1.49769 1.35338 0.85651 0.76730 0.78144 0.82499 1.22401 1.18228 1.21900 1.21091 0.91013 0.99882 0.98134 0.86393 0.88147 0.87528 0.73004 0.82741 0.81165 0.75086 0.92108 0.89890 0.94440 0.91387 0.76354 0.80417 0.93406 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.31 71.24 0.73 -0.61 16 2 C 0.51 8.66 7.68 87.66 0.67 9.33 16 3 O -0.57 -14.27 14.78 -3.04 -0.05 -14.31 16 4 N -0.66 -10.77 5.34 -303.56 -1.62 -12.40 16 5 C 0.13 2.78 6.27 38.08 0.24 3.02 16 6 C -0.07 -1.43 8.65 22.43 0.19 -1.24 16 7 C -0.13 -2.90 10.01 22.26 0.22 -2.67 16 8 C 0.12 3.43 7.28 22.67 0.17 3.60 16 9 F -0.13 -4.33 15.54 44.97 0.70 -3.63 16 10 C -0.16 -4.75 5.88 -20.07 -0.12 -4.87 16 11 C 0.55 18.81 7.77 86.74 0.67 19.49 16 12 O -0.57 -23.16 15.33 -3.93 -0.06 -23.22 16 13 N -0.70 -22.07 5.34 -466.10 -2.49 -24.56 16 14 C 0.13 3.98 5.12 86.38 0.44 4.42 16 15 C 0.17 5.54 2.84 44.99 0.13 5.67 16 16 H 0.08 2.66 8.08 -2.38 -0.02 2.64 16 17 C 0.06 1.93 6.86 71.98 0.49 2.43 16 18 O -0.58 -17.88 12.64 -148.98 -1.88 -19.76 16 19 N -0.74 -30.71 4.31 -322.93 -1.39 -32.10 16 20 C -0.22 -11.14 10.41 84.03 0.87 -10.27 16 21 H 0.07 3.73 8.06 -2.91 -0.02 3.70 16 22 C -0.05 -2.54 5.50 84.86 0.47 -2.08 16 23 N -0.98 -57.30 13.97 21.65 0.30 -56.99 16 24 Si 0.94 42.79 27.74 68.60 1.90 44.70 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.26 -10.73 6.51 99.48 0.65 -10.08 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 28 C -0.08 -1.90 9.45 22.65 0.21 -1.68 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.43 4.84 8.82 -92.71 -0.82 4.02 16 33 H 0.16 3.12 6.40 -2.91 -0.02 3.10 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.41 12.10 6.17 -92.71 -0.57 11.53 16 36 H 0.06 2.18 7.39 -2.39 -0.02 2.17 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.39 8.09 9.12 -74.06 -0.68 7.41 16 41 H 0.36 15.62 5.65 -92.71 -0.52 15.09 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.15 3.27 6.40 -2.91 -0.02 3.25 16 Total: -1.00 -76.61 371.04 -0.72 -77.33 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -1.54 Total: 40.40 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 5.40 Total: 24.54 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.20 Total: -126.05 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -1.99 Total: -57.29 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.70 Total: -3.63 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.90 Total: 44.70 kcal Total: -76.61 -0.72 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571448406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.190 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds