Wall clock time and date at job start Tue Mar 31 2020 23:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 120.00305 * 2 1 4 4 H 1.08001 * 119.99928 * 146.12866 * 3 2 1 5 5 C 1.38813 * 119.99846 * 325.85887 * 3 2 1 6 6 N 1.31617 * 120.00126 * 4.39192 * 5 3 2 7 7 Si 1.86803 * 119.99599 * 184.38843 * 5 3 2 8 8 H 1.48487 * 109.47343 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46618 * 120.00418 * 7 5 3 10 10 H 1.48495 * 109.46926 * 239.99577 * 7 5 3 11 11 C 1.46507 * 120.00175 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.46920 * 270.00315 * 11 2 1 13 13 H 1.08998 * 109.47674 * 59.99739 * 12 11 2 14 14 O 1.42903 * 109.47005 * 299.99237 * 12 11 2 15 15 C 1.52999 * 109.46917 * 180.02562 * 12 11 2 16 16 N 1.46506 * 109.47268 * 184.99789 * 15 12 11 17 17 C 1.46496 * 119.99591 * 269.99968 * 16 15 12 18 18 C 1.34778 * 119.99873 * 89.99260 * 16 15 12 19 19 O 1.21688 * 120.00197 * 358.48512 * 18 16 15 20 20 C 1.46681 * 119.99719 * 178.47934 * 18 16 15 21 21 S 1.76211 * 126.12908 * 8.53826 * 20 18 16 22 22 C 1.70955 * 90.31211 * 179.97438 * 21 20 18 23 23 N 1.29428 * 110.39254 * 0.34889 * 22 21 20 24 24 C 1.30939 * 117.35998 * 359.72194 * 23 22 21 25 25 C 1.50704 * 122.90339 * 179.97438 * 24 23 22 26 26 C 1.53005 * 117.49726 * 8.66673 * 25 24 23 27 27 C 1.52998 * 117.49955 * 300.04244 * 25 24 23 28 28 H 1.09005 * 109.47016 * 94.73922 * 1 2 3 29 29 H 1.09001 * 109.46966 * 214.74145 * 1 2 3 30 30 H 1.08999 * 109.46835 * 334.74152 * 1 2 3 31 31 H 0.96998 * 119.99903 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46858 * 29.99776 * 11 2 1 33 33 H 1.08998 * 109.47160 * 149.99739 * 11 2 1 34 34 H 0.96694 * 114.00363 * 300.00773 * 14 12 11 35 35 H 1.09000 * 109.47171 * 304.99387 * 15 12 11 36 36 H 1.09003 * 109.47521 * 64.99660 * 15 12 11 37 37 H 1.09000 * 109.47526 * 96.34122 * 17 16 15 38 38 H 1.09004 * 109.46527 * 216.33943 * 17 16 15 39 39 H 1.08999 * 109.47208 * 336.33594 * 17 16 15 40 40 H 1.07999 * 124.80660 * 180.02562 * 22 21 20 41 41 H 1.09000 * 115.54852 * 154.36811 * 25 24 23 42 42 H 1.08993 * 117.49967 * 359.97438 * 26 25 24 43 43 H 1.08994 * 117.49807 * 145.02019 * 26 25 24 44 44 H 1.08999 * 117.49799 * 214.97445 * 27 25 24 45 45 H 1.09001 * 117.50073 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0923 1.2652 0.5213 5 6 1.6351 2.2845 -0.6747 6 7 0.4493 2.2126 -1.2412 7 14 2.6257 3.8648 -0.7784 8 1 3.9162 3.6878 -0.0657 9 1 2.8883 4.1917 -2.2031 10 1 1.8600 4.9710 -0.1498 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 1.5001 -1.8416 1.9555 14 8 3.2248 -0.7155 2.1158 15 6 3.2181 -3.0357 1.4411 16 7 3.3580 -3.5195 2.8169 17 6 4.5223 -3.1290 3.6157 18 6 2.4156 -4.3237 3.3475 19 8 1.4348 -4.6257 2.6936 20 6 2.5723 -4.8351 4.7134 21 16 3.8043 -4.3418 5.8725 22 6 3.1639 -5.4259 7.0288 23 7 2.1487 -6.0611 6.5378 24 6 1.7990 -5.7777 5.3082 25 6 0.6381 -6.4418 4.6136 26 6 -0.2730 -7.3353 5.4578 27 6 0.6900 -7.9618 4.4473 28 1 -0.3633 -0.0849 -1.0242 29 1 -0.3633 -0.8445 0.5856 30 1 -0.3633 0.9294 0.4385 31 1 0.0896 2.9804 -1.7124 32 1 1.6084 -2.0282 -0.5147 33 1 3.1499 -1.1382 -0.5144 34 1 4.0873 -0.5468 1.7123 35 1 2.6711 -3.7712 0.8513 36 1 4.2063 -2.8841 1.0070 37 1 4.2640 -2.2742 4.2408 38 1 4.8251 -3.9634 4.2484 39 1 5.3440 -2.8590 2.9524 40 1 3.5546 -5.5652 8.0260 41 1 0.1756 -5.8635 3.8138 42 1 -0.0326 -7.4431 6.5154 43 1 -1.3352 -7.3448 5.2135 44 1 0.2612 -8.3836 3.5383 45 1 1.5640 -8.4816 4.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571606167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:28 Heat of formation + Delta-G solvation = 27.280125 kcal Electronic energy + Delta-G solvation = -27548.649803 eV Core-core repulsion = 23695.675843 eV Total energy + Delta-G solvation = -3852.973960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69610 -39.54412 -37.35238 -36.60171 -35.43449 -34.47483 -31.61225 -31.06353 -29.55468 -27.23161 -26.70561 -25.77789 -25.06008 -23.19115 -22.45485 -22.29052 -20.87630 -20.46608 -18.77123 -18.41672 -17.01645 -16.69884 -16.47749 -16.15685 -15.68202 -15.26196 -15.02898 -14.69056 -14.62553 -14.50133 -14.35705 -13.67593 -13.53724 -13.27826 -13.18794 -12.99883 -12.65032 -12.41208 -11.86221 -11.67458 -11.64315 -11.60315 -11.08730 -10.90507 -10.85358 -10.65775 -10.58958 -10.53574 -10.26555 -10.11185 -9.95684 -9.88858 -9.79711 -9.72188 -9.62347 -9.00340 -8.55241 -8.35300 -6.48947 -5.71435 -3.22744 0.03495 0.97187 1.35767 2.21747 2.82429 3.01367 3.39062 3.45723 3.47752 3.77771 3.95787 4.31749 4.51506 4.55508 4.72252 4.75334 4.91706 4.95396 5.04615 5.10287 5.19012 5.29353 5.34934 5.46595 5.49283 5.52763 5.67678 5.78272 5.85952 5.89120 5.97506 6.03208 6.07881 6.18394 6.40585 6.58060 6.78115 6.93026 7.16119 7.41486 7.46831 7.79335 7.90159 8.01323 8.26808 8.54610 9.31206 9.90142 10.46292 11.35678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002714 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.324736 B =10312.769488 C =11173.733538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.247 4.247 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.091 0.909 14 O -0.544 6.544 15 C 0.086 3.914 16 N -0.599 5.599 17 C 0.070 3.930 18 C 0.594 3.406 19 O -0.519 6.519 20 C -0.289 4.289 21 S 0.195 5.805 22 C 0.000 4.000 23 N -0.476 5.476 24 C 0.174 3.826 25 C -0.100 4.100 26 C -0.162 4.162 27 C -0.159 4.159 28 H 0.017 0.983 29 H -0.011 1.011 30 H 0.056 0.944 31 H 0.252 0.748 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.361 0.639 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.199 0.801 41 H 0.146 0.854 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.375 -18.332 14.521 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.377 4.377 4 H 0.085 0.915 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C -0.003 4.003 12 C 0.008 3.992 13 H 0.109 0.891 14 O -0.348 6.348 15 C -0.037 4.037 16 N -0.331 5.331 17 C -0.075 4.075 18 C 0.380 3.620 19 O -0.397 6.397 20 C -0.413 4.413 21 S 0.452 5.548 22 C -0.295 4.295 23 N -0.189 5.189 24 C 0.036 3.964 25 C -0.120 4.120 26 C -0.200 4.200 27 C -0.197 4.197 28 H 0.035 0.965 29 H 0.007 0.993 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.206 0.794 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.216 0.784 41 H 0.164 0.836 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.840 -17.993 14.876 24.964 hybrid contribution 0.417 0.583 -0.573 0.918 sum 9.257 -17.410 14.303 24.360 Atomic orbital electron populations 1.20807 0.82983 0.97192 0.97248 1.43644 1.01528 1.00315 1.85870 1.19172 1.04752 0.88333 1.25402 0.91501 1.25368 0.97093 0.99237 0.97566 1.70040 1.16444 1.29879 1.38751 0.86225 0.79820 0.83545 0.77235 1.20269 1.21709 1.21816 1.21312 0.96897 0.89768 0.92358 1.23218 0.93960 0.84483 0.97583 0.89143 1.86622 1.32420 1.60029 1.55686 1.22481 1.01924 0.98396 0.80873 1.47564 1.22316 1.48169 1.15033 1.22046 0.88860 1.00314 0.96279 1.16698 0.82950 0.78455 0.83860 1.90784 1.29002 1.59238 1.60705 1.25424 1.05380 1.09351 1.01105 1.84439 1.27923 1.39693 1.02749 1.29093 0.95972 0.98853 1.05555 1.66064 1.14493 1.26773 1.11597 1.19700 0.95480 0.92812 0.88401 1.20979 0.95755 0.93007 1.02282 1.22972 0.96445 1.02656 0.97881 1.22916 1.02076 0.93236 1.01432 0.96513 0.99262 0.92480 0.93812 0.93755 0.93165 0.79398 0.88940 0.90109 0.90740 0.91616 0.89131 0.78398 0.83634 0.87868 0.88387 0.88138 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.21 8.98 59.85 0.54 4.75 16 2 N -0.59 -15.05 2.86 -181.11 -0.52 -15.56 16 3 C -0.25 -6.73 9.06 -15.06 -0.14 -6.87 16 4 H 0.07 1.77 7.24 -52.49 -0.38 1.39 16 5 C 0.01 0.16 5.33 -17.43 -0.09 0.07 16 6 N -0.91 -26.85 10.69 55.49 0.59 -26.25 16 7 Si 0.90 21.84 29.56 -169.99 -5.02 16.82 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 C 0.13 2.51 5.41 -4.04 -0.02 2.48 16 12 C 0.07 1.23 3.48 -26.73 -0.09 1.13 16 13 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 14 O -0.54 -9.61 11.75 -35.23 -0.41 -10.02 16 15 C 0.09 1.14 5.09 -4.04 -0.02 1.12 16 16 N -0.60 -7.64 2.84 -183.12 -0.52 -8.16 16 17 C 0.07 0.64 8.62 59.84 0.52 1.16 16 18 C 0.59 8.76 7.62 -12.85 -0.10 8.66 16 19 O -0.52 -9.09 13.93 5.20 0.07 -9.02 16 20 C -0.29 -3.69 6.25 -37.10 -0.23 -3.92 16 21 S 0.19 1.66 18.17 -107.50 -1.95 -0.30 16 22 C 0.00 0.00 12.22 51.75 0.63 0.63 16 23 N -0.48 -5.56 9.80 -11.53 -0.11 -5.67 16 24 C 0.17 2.26 6.41 -83.89 -0.54 1.72 16 25 C -0.10 -1.27 5.53 -91.77 -0.51 -1.78 16 26 C -0.16 -1.70 10.09 -26.73 -0.27 -1.97 16 27 C -0.16 -1.66 10.23 -26.73 -0.27 -1.93 16 28 H 0.02 0.45 7.79 -51.93 -0.40 0.05 16 29 H -0.01 -0.26 8.11 -51.93 -0.42 -0.68 16 30 H 0.06 1.61 6.97 -51.93 -0.36 1.25 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.04 0.85 8.07 -51.93 -0.42 0.44 16 33 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.36 5.18 9.02 45.56 0.41 5.60 16 35 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16 36 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 37 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 38 H 0.07 0.52 4.48 -22.82 -0.10 0.42 16 39 H 0.09 0.64 7.82 -51.93 -0.41 0.24 16 40 H 0.20 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.15 2.12 6.05 -51.93 -0.31 1.81 16 42 H 0.10 1.10 7.74 -51.93 -0.40 0.70 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -34.54 378.69 -8.44 -42.97 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.67 Total: 4.23 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.60 Total: 5.26 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.56 Total: -55.65 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.34 Total: -19.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.95 Total: -0.30 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.54 -8.44 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571606167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.254 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds