Wall clock time and date at job start Tue Mar 31 2020 23:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 120.00305 * 2 1 4 4 H 1.08001 * 119.99928 * 146.12866 * 3 2 1 5 5 C 1.38813 * 119.99846 * 325.85887 * 3 2 1 6 6 N 1.31617 * 120.00126 * 4.39192 * 5 3 2 7 7 Si 1.86803 * 119.99599 * 184.38843 * 5 3 2 8 8 H 1.48487 * 109.47343 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46618 * 120.00418 * 7 5 3 10 10 H 1.48495 * 109.46926 * 239.99577 * 7 5 3 11 11 C 1.46507 * 120.00175 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.46920 * 270.00315 * 11 2 1 13 13 H 1.08998 * 109.47674 * 59.99739 * 12 11 2 14 14 O 1.42903 * 109.47005 * 299.99237 * 12 11 2 15 15 C 1.52999 * 109.46917 * 180.02562 * 12 11 2 16 16 N 1.46506 * 109.47268 * 184.99789 * 15 12 11 17 17 C 1.46496 * 119.99591 * 269.99968 * 16 15 12 18 18 C 1.34778 * 119.99873 * 89.99260 * 16 15 12 19 19 O 1.21688 * 120.00197 * 358.48512 * 18 16 15 20 20 C 1.46681 * 119.99719 * 178.47934 * 18 16 15 21 21 S 1.76211 * 126.12908 * 8.53826 * 20 18 16 22 22 C 1.70955 * 90.31211 * 179.97438 * 21 20 18 23 23 N 1.29428 * 110.39254 * 0.34889 * 22 21 20 24 24 C 1.30939 * 117.35998 * 359.72194 * 23 22 21 25 25 C 1.50704 * 122.90339 * 179.97438 * 24 23 22 26 26 C 1.53005 * 117.49726 * 8.66673 * 25 24 23 27 27 C 1.52998 * 117.49955 * 300.04244 * 25 24 23 28 28 H 1.09005 * 109.47016 * 94.73922 * 1 2 3 29 29 H 1.09001 * 109.46966 * 214.74145 * 1 2 3 30 30 H 1.08999 * 109.46835 * 334.74152 * 1 2 3 31 31 H 0.96998 * 119.99903 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46858 * 29.99776 * 11 2 1 33 33 H 1.08998 * 109.47160 * 149.99739 * 11 2 1 34 34 H 0.96694 * 114.00363 * 300.00773 * 14 12 11 35 35 H 1.09000 * 109.47171 * 304.99387 * 15 12 11 36 36 H 1.09003 * 109.47521 * 64.99660 * 15 12 11 37 37 H 1.09000 * 109.47526 * 96.34122 * 17 16 15 38 38 H 1.09004 * 109.46527 * 216.33943 * 17 16 15 39 39 H 1.08999 * 109.47208 * 336.33594 * 17 16 15 40 40 H 1.07999 * 124.80660 * 180.02562 * 22 21 20 41 41 H 1.09000 * 115.54852 * 154.36811 * 25 24 23 42 42 H 1.08993 * 117.49967 * 359.97438 * 26 25 24 43 43 H 1.08994 * 117.49807 * 145.02019 * 26 25 24 44 44 H 1.08999 * 117.49799 * 214.97445 * 27 25 24 45 45 H 1.09001 * 117.50073 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0923 1.2652 0.5213 5 6 1.6351 2.2845 -0.6747 6 7 0.4493 2.2126 -1.2412 7 14 2.6257 3.8648 -0.7784 8 1 3.9162 3.6878 -0.0657 9 1 2.8883 4.1917 -2.2031 10 1 1.8600 4.9710 -0.1498 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 1 1.5001 -1.8416 1.9555 14 8 3.2248 -0.7155 2.1158 15 6 3.2181 -3.0357 1.4411 16 7 3.3580 -3.5195 2.8169 17 6 4.5223 -3.1290 3.6157 18 6 2.4156 -4.3237 3.3475 19 8 1.4348 -4.6257 2.6936 20 6 2.5723 -4.8351 4.7134 21 16 3.8043 -4.3418 5.8725 22 6 3.1639 -5.4259 7.0288 23 7 2.1487 -6.0611 6.5378 24 6 1.7990 -5.7777 5.3082 25 6 0.6381 -6.4418 4.6136 26 6 -0.2730 -7.3353 5.4578 27 6 0.6900 -7.9618 4.4473 28 1 -0.3633 -0.0849 -1.0242 29 1 -0.3633 -0.8445 0.5856 30 1 -0.3633 0.9294 0.4385 31 1 0.0896 2.9804 -1.7124 32 1 1.6084 -2.0282 -0.5147 33 1 3.1499 -1.1382 -0.5144 34 1 4.0873 -0.5468 1.7123 35 1 2.6711 -3.7712 0.8513 36 1 4.2063 -2.8841 1.0070 37 1 4.2640 -2.2742 4.2408 38 1 4.8251 -3.9634 4.2484 39 1 5.3440 -2.8590 2.9524 40 1 3.5546 -5.5652 8.0260 41 1 0.1756 -5.8635 3.8138 42 1 -0.0326 -7.4431 6.5154 43 1 -1.3352 -7.3448 5.2135 44 1 0.2612 -8.3836 3.5383 45 1 1.5640 -8.4816 4.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571606167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:27 Heat of formation + Delta-G solvation = 2.477414 kcal Electronic energy + Delta-G solvation = -27549.725329 eV Core-core repulsion = 23695.675843 eV Total energy + Delta-G solvation = -3854.049486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61024 -40.53883 -38.79877 -37.45581 -36.84645 -36.01842 -33.35513 -32.26223 -30.84491 -28.28235 -27.94901 -27.70773 -26.19077 -24.29921 -23.61810 -23.27099 -22.23239 -21.87671 -19.70608 -19.27084 -18.79197 -17.80870 -17.52048 -17.30866 -16.90574 -16.65863 -16.29121 -16.18694 -15.58877 -15.46278 -15.34543 -15.18246 -14.90618 -14.69109 -14.41611 -14.12015 -13.75403 -13.70861 -13.28213 -13.12874 -12.81460 -12.62604 -12.53674 -12.47231 -12.41830 -12.23090 -12.16105 -11.85155 -11.78898 -11.75167 -11.45036 -11.27870 -11.00185 -10.57449 -10.54048 -10.43853 -9.92930 -9.46363 -8.51235 -7.82158 -5.36328 -0.77581 0.20274 0.61481 1.35905 1.48583 1.49098 1.59990 1.85706 2.01695 2.53332 2.95593 3.17356 3.35600 3.42232 3.55970 3.71094 3.80795 3.94747 4.00510 4.10865 4.12530 4.17984 4.25121 4.44796 4.48667 4.55486 4.57650 4.70864 4.74229 4.78552 4.83550 4.85716 4.97160 5.04166 5.19423 5.20251 5.26812 5.35282 5.42854 5.62141 5.74857 6.17676 6.44900 6.62136 6.97060 7.04695 7.21567 7.87487 8.40326 9.24524 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002714 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.324736 B =10312.769488 C =11173.733538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.612 5.612 3 C -0.246 4.246 4 H 0.080 0.920 5 C -0.057 4.057 6 N -0.944 5.944 7 Si 0.970 3.030 8 H -0.257 1.257 9 H -0.293 1.293 10 H -0.299 1.299 11 C 0.123 3.877 12 C 0.091 3.909 13 H 0.049 0.951 14 O -0.558 6.558 15 C 0.097 3.903 16 N -0.598 5.598 17 C 0.063 3.937 18 C 0.584 3.416 19 O -0.562 6.562 20 C -0.331 4.331 21 S 0.262 5.738 22 C 0.007 3.993 23 N -0.502 5.502 24 C 0.166 3.834 25 C -0.126 4.126 26 C -0.151 4.151 27 C -0.147 4.147 28 H -0.004 1.004 29 H 0.005 0.995 30 H 0.026 0.974 31 H 0.246 0.754 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.378 0.622 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.239 0.761 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 -18.896 16.306 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.335 5.335 3 C -0.377 4.377 4 H 0.097 0.903 5 C -0.251 4.251 6 N -0.591 5.591 7 Si 0.798 3.202 8 H -0.181 1.181 9 H -0.220 1.220 10 H -0.227 1.227 11 C -0.004 4.004 12 C 0.028 3.972 13 H 0.068 0.932 14 O -0.364 6.364 15 C -0.027 4.027 16 N -0.329 5.329 17 C -0.080 4.080 18 C 0.372 3.628 19 O -0.443 6.443 20 C -0.455 4.455 21 S 0.520 5.480 22 C -0.286 4.286 23 N -0.216 5.216 24 C 0.027 3.973 25 C -0.147 4.147 26 C -0.188 4.188 27 C -0.185 4.185 28 H 0.014 0.986 29 H 0.023 0.977 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.255 0.745 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.309 -18.573 16.695 27.842 hybrid contribution -0.586 0.720 -1.020 1.380 sum 11.722 -17.853 15.675 26.492 Atomic orbital electron populations 1.20487 0.84198 0.96130 0.95906 1.43898 1.01300 1.01932 1.86320 1.19562 1.04678 0.89014 1.24415 0.90289 1.26186 0.98105 1.02847 0.97985 1.70223 1.18156 1.30521 1.40215 0.85152 0.78930 0.79165 0.76917 1.18123 1.21963 1.22657 1.21522 0.97036 0.87483 0.94357 1.22705 0.93232 0.86601 0.94634 0.93236 1.86582 1.33542 1.60294 1.55967 1.22272 1.03183 0.95510 0.81686 1.47628 1.22859 1.47410 1.15009 1.22306 0.88241 1.00651 0.96822 1.17117 0.82640 0.78426 0.84610 1.90753 1.30695 1.60836 1.62050 1.25385 1.08045 1.10689 1.01383 1.84035 1.25270 1.38258 1.00417 1.29844 0.94503 0.97303 1.06941 1.66114 1.16141 1.28220 1.11120 1.19798 0.95478 0.92927 0.89085 1.20892 0.97057 0.93978 1.02755 1.23004 0.96849 1.01243 0.97707 1.22955 1.02123 0.91656 1.01761 0.98561 0.97650 0.95516 0.94476 0.93529 0.91323 0.77406 0.89959 0.86098 0.91048 0.90257 0.86176 0.74462 0.86352 0.87825 0.87345 0.87263 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.57 8.98 127.77 1.15 10.72 16 2 N -0.61 -31.29 2.86 -726.92 -2.08 -33.36 16 3 C -0.25 -13.33 9.06 84.03 0.76 -12.56 16 4 H 0.08 4.01 7.24 -2.91 -0.02 3.99 16 5 C -0.06 -3.21 5.33 84.86 0.45 -2.76 16 6 N -0.94 -57.37 10.69 21.65 0.23 -57.13 16 7 Si 0.97 44.90 29.56 68.60 2.03 46.93 16 8 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 11 C 0.12 4.82 5.41 86.38 0.47 5.29 16 12 C 0.09 3.10 3.48 30.59 0.11 3.20 16 13 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 14 O -0.56 -18.61 11.75 -148.98 -1.75 -20.36 16 15 C 0.10 2.41 5.09 86.38 0.44 2.85 16 16 N -0.60 -14.43 2.84 -851.49 -2.42 -16.84 16 17 C 0.06 0.97 8.62 127.77 1.10 2.07 16 18 C 0.58 17.41 7.62 86.45 0.66 18.07 16 19 O -0.56 -20.81 13.93 -4.31 -0.06 -20.87 16 20 C -0.33 -8.30 6.25 23.88 0.15 -8.15 16 21 S 0.26 3.74 18.17 -56.49 -1.03 2.71 16 22 C 0.01 0.10 12.22 130.60 1.60 1.70 16 23 N -0.50 -11.02 9.80 -190.40 -1.87 -12.89 16 24 C 0.17 4.31 6.41 42.10 0.27 4.58 16 25 C -0.13 -3.34 5.53 -11.54 -0.06 -3.41 16 26 C -0.15 -3.16 10.09 30.60 0.31 -2.85 16 27 C -0.15 -3.08 10.23 30.60 0.31 -2.77 16 28 H 0.00 -0.22 7.79 -2.38 -0.02 -0.24 16 29 H 0.01 0.25 8.11 -2.39 -0.02 0.23 16 30 H 0.03 1.55 6.97 -2.39 -0.02 1.53 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 32 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 33 H 0.07 2.43 8.04 -2.39 -0.02 2.42 16 34 H 0.38 9.59 9.02 -74.06 -0.67 8.92 16 35 H 0.08 2.27 7.44 -2.39 -0.02 2.25 16 36 H 0.12 2.07 7.85 -2.39 -0.02 2.05 16 37 H 0.07 1.17 7.88 -2.39 -0.02 1.15 16 38 H 0.08 0.98 4.48 -20.89 -0.09 0.89 16 39 H 0.12 1.14 7.82 -2.39 -0.02 1.12 16 40 H 0.24 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.12 3.78 6.05 -2.39 -0.01 3.76 16 42 H 0.10 2.16 7.74 -2.39 -0.02 2.14 16 43 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -78.48 378.69 1.04 -77.44 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.27 Total: 18.40 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 7.71 Total: 15.97 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.13 Total: -120.23 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.81 Total: -41.22 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.03 Total: 2.71 kcal Total: -78.48 1.04 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571606167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.921 kcal (2) G-P(sol) polarization free energy of solvation -78.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds