Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35961 * 116.99930 * 2 1 4 4 C 1.37566 * 120.82588 * 179.97438 * 3 2 1 5 5 C 1.38040 * 114.25239 * 179.97438 * 4 3 2 6 6 C 1.47113 * 127.76175 * 179.97438 * 5 4 3 7 7 O 1.21635 * 119.99970 * 8.81489 * 6 5 4 8 8 N 1.34778 * 120.00017 * 188.81059 * 6 5 4 9 9 C 1.46921 * 120.62950 * 12.24328 * 8 6 5 10 10 C 1.53195 * 108.77371 * 126.36948 * 9 8 6 11 11 C 1.53042 * 109.31217 * 54.63365 * 10 9 8 12 12 C 1.53042 * 109.54224 * 298.63826 * 11 10 9 13 13 C 1.46924 * 120.62972 * 191.97223 * 8 6 5 14 14 H 1.08998 * 109.59003 * 113.84336 * 13 8 6 15 15 C 1.53002 * 109.58559 * 353.41276 * 13 8 6 16 16 N 1.46498 * 109.46881 * 177.65096 * 15 13 8 17 17 C 1.46506 * 120.00106 * 93.76958 * 16 15 13 18 18 C 1.36941 * 120.00377 * 273.76419 * 16 15 13 19 19 H 1.07994 * 119.99910 * 142.96972 * 18 16 15 20 20 C 1.38816 * 119.99854 * 322.97043 * 18 16 15 21 21 N 1.31611 * 119.99589 * 157.72423 * 20 18 16 22 22 Si 1.86801 * 120.00017 * 337.72479 * 20 18 16 23 23 H 1.48498 * 109.47041 * 95.01789 * 22 20 18 24 24 H 1.48497 * 109.47106 * 215.01938 * 22 20 18 25 25 H 1.48508 * 109.46860 * 335.02208 * 22 20 18 26 26 S 1.77237 * 104.47692 * 0.02562 * 5 4 3 27 27 N 1.30365 * 120.82771 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46927 * 60.00106 * 1 2 3 29 29 H 1.09000 * 109.46789 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46928 * 300.00259 * 1 2 3 31 31 H 1.07998 * 122.87542 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.58954 * 246.15624 * 9 8 6 33 33 H 1.08997 * 109.59270 * 6.58956 * 9 8 6 34 34 H 1.08998 * 109.50186 * 174.58535 * 10 9 8 35 35 H 1.08995 * 109.50024 * 294.68701 * 10 9 8 36 36 H 1.09006 * 109.45783 * 58.65630 * 11 10 9 37 37 H 1.08997 * 109.46720 * 178.62557 * 11 10 9 38 38 H 1.08994 * 109.50108 * 181.31465 * 12 11 10 39 39 H 1.08998 * 109.49281 * 301.38303 * 12 11 10 40 40 H 1.09004 * 109.47321 * 297.65316 * 15 13 8 41 41 H 1.09002 * 109.46849 * 57.65779 * 15 13 8 42 42 H 1.09000 * 109.47225 * 85.61370 * 17 16 15 43 43 H 1.09001 * 109.47363 * 205.62240 * 17 16 15 44 44 H 1.09003 * 109.46443 * 325.62025 * 17 16 15 45 45 H 0.97005 * 119.99830 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9007 2.5968 -0.0001 6 6 5.3050 3.0352 0.0007 7 8 6.1958 2.2226 -0.1593 8 7 5.6044 4.3372 0.1787 9 6 4.5794 5.2853 0.6359 10 6 5.1052 6.0215 1.8722 11 6 6.4542 6.6648 1.5426 12 6 7.4613 5.5765 1.1638 13 6 6.9635 4.8342 -0.0751 14 1 6.9505 5.5159 -0.9255 15 6 7.8932 3.6560 -0.3727 16 7 9.2346 4.1582 -0.6804 17 6 10.2388 4.2633 0.3812 18 6 9.5500 4.5292 -1.9602 19 1 10.1932 5.3794 -2.1330 20 6 9.0430 3.8126 -3.0356 21 7 8.9601 4.3766 -4.2218 22 14 8.4783 2.0478 -2.7989 23 1 7.0145 2.0256 -2.5502 24 1 8.7848 1.2618 -4.0210 25 1 9.1868 1.4530 -1.6371 26 16 2.4471 3.6110 -0.0006 27 7 1.3522 2.3149 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0644 0.4374 0.0014 32 1 4.3680 6.0046 -0.1553 33 1 3.6692 4.7436 0.8930 34 1 4.3950 6.7950 2.1645 35 1 5.2303 5.3136 2.6915 36 1 6.3332 7.3543 0.7071 37 1 6.8190 7.2098 2.4132 38 1 8.4280 6.0332 0.9519 39 1 7.5646 4.8730 1.9900 40 1 7.9409 3.0019 0.4980 41 1 7.5098 3.0973 -1.2265 42 1 10.7476 3.3062 0.4962 43 1 10.9657 5.0320 0.1190 44 1 9.7501 4.5298 1.3184 45 1 8.6055 3.8760 -4.9732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657063329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = 32.055908 kcal Electronic energy + Delta-G solvation = -28686.715122 eV Core-core repulsion = 24833.948256 eV Total energy + Delta-G solvation = -3852.766866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57769 -40.14225 -37.49970 -36.46235 -35.75926 -33.00188 -32.06711 -31.38321 -30.59614 -28.31748 -27.23917 -26.00273 -25.02275 -24.31103 -22.65390 -21.60208 -20.81008 -20.29215 -19.20299 -18.30022 -17.78555 -16.76839 -16.44652 -16.06089 -15.81356 -15.68145 -15.01779 -14.84526 -14.69411 -14.46083 -13.91765 -13.61173 -13.54883 -13.31764 -13.17450 -12.96232 -12.75740 -12.46631 -12.26313 -12.03791 -11.78760 -11.60435 -11.52612 -11.27050 -11.12066 -10.97403 -10.73995 -10.67412 -10.62305 -10.34654 -10.16211 -9.82837 -9.71007 -9.56104 -9.16819 -8.49726 -8.40873 -8.31101 -6.72486 -5.93281 -3.34848 0.02722 0.99000 1.38374 2.10894 2.66515 3.07780 3.16919 3.54592 3.62980 3.75168 4.28421 4.58535 4.65550 4.74709 4.82983 4.89409 4.97781 4.98244 5.08244 5.21758 5.25841 5.28178 5.36215 5.38566 5.49174 5.55365 5.74424 5.80491 5.87062 5.92967 6.01792 6.09184 6.22478 6.30265 6.36090 6.46576 6.60963 6.71594 6.77784 6.82831 6.85891 7.16022 7.43424 8.06685 8.20152 8.42579 9.07117 9.79266 10.20075 11.21214 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.004474 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.147091 B = 6256.330566 C = 7671.951551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.298 6.298 3 C 0.308 3.692 4 C -0.132 4.132 5 C -0.174 4.174 6 C 0.584 3.416 7 O -0.493 6.493 8 N -0.597 5.597 9 C 0.100 3.900 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.123 4.123 13 C 0.127 3.873 14 H 0.087 0.913 15 C 0.146 3.854 16 N -0.613 5.613 17 C 0.120 3.880 18 C -0.274 4.274 19 H 0.078 0.922 20 C 0.037 3.963 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.274 1.274 24 H -0.309 1.309 25 H -0.271 1.271 26 S 0.295 5.705 27 N -0.538 5.538 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.005 0.995 43 H 0.043 0.957 44 H 0.029 0.971 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 0.111 13.462 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.204 6.204 3 C 0.094 3.906 4 C -0.169 4.169 5 C -0.306 4.306 6 C 0.369 3.631 7 O -0.367 6.367 8 N -0.332 5.332 9 C -0.026 4.026 10 C -0.166 4.166 11 C -0.159 4.159 12 C -0.161 4.161 13 C 0.024 3.976 14 H 0.105 0.895 15 C 0.021 3.979 16 N -0.337 5.337 17 C -0.025 4.025 18 C -0.402 4.402 19 H 0.096 0.904 20 C -0.163 4.163 21 N -0.543 5.543 22 Si 0.710 3.290 23 H -0.201 1.201 24 H -0.237 1.237 25 H -0.196 1.196 26 S 0.446 5.554 27 N -0.377 5.377 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.195 0.805 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.179 0.940 13.184 21.676 hybrid contribution 0.187 -2.325 -0.077 2.334 sum -16.993 -1.385 13.106 21.505 Atomic orbital electron populations 1.22952 0.76849 1.03462 1.02485 1.86306 1.22895 1.22913 1.88238 1.19856 0.89673 0.85263 0.95821 1.20783 0.92482 0.98707 1.04899 1.26298 0.99527 0.97542 1.07209 1.16780 0.85011 0.82939 0.78413 1.90960 1.45327 1.52648 1.47805 1.48145 1.12565 1.06525 1.65916 1.22101 0.89808 0.92827 0.97902 1.21867 0.98103 0.99773 0.96885 1.21564 0.94586 0.98193 1.01514 1.21902 0.99458 0.97283 0.97459 1.22350 0.78349 0.99599 0.97325 0.89463 1.21869 0.83964 0.91405 1.00695 1.44311 1.06134 1.77174 1.06129 1.21175 0.92356 0.98206 0.90764 1.18796 1.31254 1.09674 0.80484 0.90423 1.25436 0.98347 0.97638 0.94902 1.69880 1.46980 1.36314 1.01091 0.86916 0.79072 0.86948 0.76028 1.20099 1.23728 1.19599 1.85088 0.89443 1.11219 1.69624 1.76334 1.28810 1.02214 1.30327 0.92172 0.88108 0.92203 0.80531 0.90026 0.90855 0.90546 0.91418 0.91503 0.91790 0.89485 0.92309 0.92608 0.90569 0.97649 0.93804 0.95216 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.43 101.05 1.05 1.38 16 2 O -0.30 -3.62 10.51 -19.62 -0.21 -3.82 16 3 C 0.31 4.14 7.36 -18.42 -0.14 4.00 16 4 C -0.13 -1.87 10.11 -39.90 -0.40 -2.27 16 5 C -0.17 -2.59 6.40 -36.05 -0.23 -2.82 16 6 C 0.58 10.41 7.51 -12.66 -0.10 10.31 16 7 O -0.49 -10.60 11.79 5.25 0.06 -10.54 16 8 N -0.60 -9.66 2.98 -166.85 -0.50 -10.16 16 9 C 0.10 1.17 5.58 -3.71 -0.02 1.15 16 10 C -0.13 -1.27 6.08 -26.61 -0.16 -1.44 16 11 C -0.12 -1.38 5.89 -26.69 -0.16 -1.54 16 12 C -0.12 -1.85 4.08 -26.83 -0.11 -1.96 16 13 C 0.13 2.37 3.15 -67.82 -0.21 2.16 16 14 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 15 C 0.15 3.33 2.53 -4.04 -0.01 3.32 16 16 N -0.61 -14.84 2.22 -181.11 -0.40 -15.24 16 17 C 0.12 2.43 9.89 59.85 0.59 3.02 16 18 C -0.27 -7.72 9.89 -15.06 -0.15 -7.87 16 19 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 20 C 0.04 1.11 5.32 -17.43 -0.09 1.02 16 21 N -0.90 -27.88 13.97 55.49 0.78 -27.11 16 22 Si 0.88 24.14 24.89 -169.99 -4.23 19.90 16 23 H -0.27 -7.48 6.13 56.52 0.35 -7.13 16 24 H -0.31 -8.54 7.11 56.52 0.40 -8.14 16 25 H -0.27 -7.55 7.11 56.52 0.40 -7.14 16 26 S 0.30 3.59 19.66 -107.50 -2.11 1.47 16 27 N -0.54 -7.12 11.03 29.19 0.32 -6.80 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.79 3.42 -20.63 -0.07 0.72 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.40 6.64 -51.93 -0.34 1.06 16 39 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.06 1.26 6.90 -51.93 -0.36 0.90 16 41 H 0.08 1.97 1.50 -51.93 -0.08 1.89 16 42 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.04 0.85 8.00 -51.93 -0.42 0.44 16 44 H 0.03 0.51 6.33 -51.93 -0.33 0.18 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -33.77 358.31 -7.30 -41.07 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.28 Total: -2.63 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.13 Total: 8.45 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.20 Total: -59.30 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.14 Total: -14.36 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.23 Total: 19.90 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.11 Total: 1.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.77 -7.30 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657063329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.123 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds