Wall clock time and date at job start Tue Mar 31 2020 23:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35961 * 116.99930 * 2 1 4 4 C 1.37566 * 120.82588 * 179.97438 * 3 2 1 5 5 C 1.38040 * 114.25239 * 179.97438 * 4 3 2 6 6 C 1.47113 * 127.76175 * 179.97438 * 5 4 3 7 7 O 1.21635 * 119.99970 * 8.81489 * 6 5 4 8 8 N 1.34778 * 120.00017 * 188.81059 * 6 5 4 9 9 C 1.46921 * 120.62950 * 12.24328 * 8 6 5 10 10 C 1.53195 * 108.77371 * 126.36948 * 9 8 6 11 11 C 1.53042 * 109.31217 * 54.63365 * 10 9 8 12 12 C 1.53042 * 109.54224 * 298.63826 * 11 10 9 13 13 C 1.46924 * 120.62972 * 191.97223 * 8 6 5 14 14 H 1.08998 * 109.59003 * 113.84336 * 13 8 6 15 15 C 1.53002 * 109.58559 * 353.41276 * 13 8 6 16 16 N 1.46498 * 109.46881 * 177.65096 * 15 13 8 17 17 C 1.46506 * 120.00106 * 93.76958 * 16 15 13 18 18 C 1.36941 * 120.00377 * 273.76419 * 16 15 13 19 19 H 1.07994 * 119.99910 * 142.96972 * 18 16 15 20 20 C 1.38816 * 119.99854 * 322.97043 * 18 16 15 21 21 N 1.31611 * 119.99589 * 157.72423 * 20 18 16 22 22 Si 1.86801 * 120.00017 * 337.72479 * 20 18 16 23 23 H 1.48498 * 109.47041 * 95.01789 * 22 20 18 24 24 H 1.48497 * 109.47106 * 215.01938 * 22 20 18 25 25 H 1.48508 * 109.46860 * 335.02208 * 22 20 18 26 26 S 1.77237 * 104.47692 * 0.02562 * 5 4 3 27 27 N 1.30365 * 120.82771 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46927 * 60.00106 * 1 2 3 29 29 H 1.09000 * 109.46789 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46928 * 300.00259 * 1 2 3 31 31 H 1.07998 * 122.87542 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.58954 * 246.15624 * 9 8 6 33 33 H 1.08997 * 109.59270 * 6.58956 * 9 8 6 34 34 H 1.08998 * 109.50186 * 174.58535 * 10 9 8 35 35 H 1.08995 * 109.50024 * 294.68701 * 10 9 8 36 36 H 1.09006 * 109.45783 * 58.65630 * 11 10 9 37 37 H 1.08997 * 109.46720 * 178.62557 * 11 10 9 38 38 H 1.08994 * 109.50108 * 181.31465 * 12 11 10 39 39 H 1.08998 * 109.49281 * 301.38303 * 12 11 10 40 40 H 1.09004 * 109.47321 * 297.65316 * 15 13 8 41 41 H 1.09002 * 109.46849 * 57.65779 * 15 13 8 42 42 H 1.09000 * 109.47225 * 85.61370 * 17 16 15 43 43 H 1.09001 * 109.47363 * 205.62240 * 17 16 15 44 44 H 1.09003 * 109.46443 * 325.62025 * 17 16 15 45 45 H 0.97005 * 119.99830 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9007 2.5968 -0.0001 6 6 5.3050 3.0352 0.0007 7 8 6.1958 2.2226 -0.1593 8 7 5.6044 4.3372 0.1787 9 6 4.5794 5.2853 0.6359 10 6 5.1052 6.0215 1.8722 11 6 6.4542 6.6648 1.5426 12 6 7.4613 5.5765 1.1638 13 6 6.9635 4.8342 -0.0751 14 1 6.9505 5.5159 -0.9255 15 6 7.8932 3.6560 -0.3727 16 7 9.2346 4.1582 -0.6804 17 6 10.2388 4.2633 0.3812 18 6 9.5500 4.5292 -1.9602 19 1 10.1932 5.3794 -2.1330 20 6 9.0430 3.8126 -3.0356 21 7 8.9601 4.3766 -4.2218 22 14 8.4783 2.0478 -2.7989 23 1 7.0145 2.0256 -2.5502 24 1 8.7848 1.2618 -4.0210 25 1 9.1868 1.4530 -1.6371 26 16 2.4471 3.6110 -0.0006 27 7 1.3522 2.3149 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0644 0.4374 0.0014 32 1 4.3680 6.0046 -0.1553 33 1 3.6692 4.7436 0.8930 34 1 4.3950 6.7950 2.1645 35 1 5.2303 5.3136 2.6915 36 1 6.3332 7.3543 0.7071 37 1 6.8190 7.2098 2.4132 38 1 8.4280 6.0332 0.9519 39 1 7.5646 4.8730 1.9900 40 1 7.9409 3.0019 0.4980 41 1 7.5098 3.0973 -1.2265 42 1 10.7476 3.3062 0.4962 43 1 10.9657 5.0320 0.1190 44 1 9.7501 4.5298 1.3184 45 1 8.6055 3.8760 -4.9732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657063329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:16 Heat of formation + Delta-G solvation = 7.444434 kcal Electronic energy + Delta-G solvation = -28687.782356 eV Core-core repulsion = 24833.948256 eV Total energy + Delta-G solvation = -3853.834100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85690 -41.16502 -38.76232 -37.55664 -37.45213 -34.29495 -33.82091 -32.90936 -31.84927 -29.20391 -28.65109 -27.73870 -26.43319 -25.40120 -23.92169 -22.98295 -22.43744 -21.41485 -20.34569 -19.54421 -18.88928 -18.48350 -17.56671 -17.35900 -17.31803 -17.06036 -16.47376 -16.04263 -15.84969 -15.57403 -15.36359 -15.20103 -14.74931 -14.64521 -14.47401 -14.31724 -14.10394 -14.09038 -13.74936 -13.21314 -13.09436 -13.03825 -12.70732 -12.67551 -12.44989 -12.38601 -12.13301 -12.06112 -11.93247 -11.75690 -11.61866 -11.47238 -11.32206 -10.90718 -10.83076 -10.50778 -9.68384 -9.45411 -8.73533 -8.23920 -5.58734 -1.10030 -0.07164 0.37071 1.01942 1.31962 1.38062 1.50316 1.51941 1.79973 2.16558 2.39439 3.02701 3.18897 3.48405 3.61802 3.75653 3.91317 3.94342 4.02153 4.08703 4.27395 4.31687 4.32820 4.34683 4.46895 4.52484 4.56719 4.67679 4.73893 4.76690 4.90163 4.95753 4.96619 5.04021 5.10448 5.13491 5.15890 5.24914 5.28358 5.48709 5.56900 5.90972 5.92307 6.14134 6.17335 6.78841 7.01137 7.63665 8.06671 8.94691 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.004474 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.147091 B = 6256.330566 C = 7671.951551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.304 3.696 4 C -0.133 4.133 5 C -0.199 4.199 6 C 0.578 3.422 7 O -0.542 6.542 8 N -0.596 5.596 9 C 0.092 3.908 10 C -0.121 4.121 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.136 3.864 14 H 0.060 0.940 15 C 0.148 3.852 16 N -0.626 5.626 17 C 0.119 3.881 18 C -0.251 4.251 19 H 0.056 0.944 20 C -0.006 4.006 21 N -0.940 5.940 22 Si 0.934 3.066 23 H -0.278 1.278 24 H -0.314 1.314 25 H -0.280 1.280 26 S 0.355 5.645 27 N -0.544 5.544 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.174 0.826 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.004 0.996 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 1.118 15.893 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.214 6.214 3 C 0.091 3.909 4 C -0.171 4.171 5 C -0.331 4.331 6 C 0.364 3.636 7 O -0.420 6.420 8 N -0.329 5.329 9 C -0.032 4.032 10 C -0.160 4.160 11 C -0.154 4.154 12 C -0.154 4.154 13 C 0.031 3.969 14 H 0.078 0.922 15 C 0.023 3.977 16 N -0.352 5.352 17 C -0.025 4.025 18 C -0.381 4.381 19 H 0.074 0.926 20 C -0.203 4.203 21 N -0.585 5.585 22 Si 0.766 3.234 23 H -0.206 1.206 24 H -0.244 1.244 25 H -0.206 1.206 26 S 0.507 5.493 27 N -0.384 5.384 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.191 0.809 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.496 1.970 15.664 25.086 hybrid contribution 0.821 -2.594 -0.755 2.824 sum -18.674 -0.624 14.909 23.904 Atomic orbital electron populations 1.23238 0.74943 1.05510 1.02581 1.86306 1.24792 1.22308 1.87998 1.19749 0.89376 0.85768 0.95973 1.20864 0.93084 0.98626 1.04540 1.25991 0.99242 0.98855 1.09005 1.17164 0.85850 0.83011 0.77581 1.90920 1.47039 1.53943 1.50098 1.48188 1.12598 1.06858 1.65294 1.22468 0.89028 0.92380 0.99366 1.21895 0.97936 1.00473 0.95648 1.21549 0.94354 0.96962 1.02490 1.21816 0.99991 0.98095 0.95501 1.21892 0.79257 0.97325 0.98398 0.92220 1.21718 0.83923 0.92695 0.99362 1.44482 1.07944 1.77144 1.05605 1.21293 0.91900 0.98326 0.90962 1.18773 1.29064 1.08053 0.82232 0.92627 1.25821 0.99797 0.99729 0.94977 1.69949 1.49512 1.37228 1.01762 0.86059 0.78312 0.84230 0.74822 1.20609 1.24384 1.20563 1.84771 0.86847 1.09547 1.68138 1.76274 1.29317 1.02637 1.30167 0.92313 0.85209 0.91766 0.80852 0.88713 0.89709 0.86785 0.91148 0.91586 0.89298 0.90702 0.91893 0.92694 0.93526 0.97789 0.93265 0.91867 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.43 113.37 1.18 1.66 16 2 O -0.31 -7.07 10.51 -93.11 -0.98 -8.05 16 3 C 0.30 7.80 7.36 84.75 0.62 8.42 16 4 C -0.13 -3.73 10.11 22.06 0.22 -3.51 16 5 C -0.20 -5.79 6.40 24.55 0.16 -5.64 16 6 C 0.58 20.58 7.51 86.57 0.65 21.23 16 7 O -0.54 -23.90 11.79 -4.14 -0.05 -23.95 16 8 N -0.60 -18.73 2.98 -800.03 -2.38 -21.11 16 9 C 0.09 1.90 5.58 86.36 0.48 2.38 16 10 C -0.12 -1.91 6.08 30.67 0.19 -1.72 16 11 C -0.12 -2.25 5.89 30.62 0.18 -2.07 16 12 C -0.12 -3.26 4.08 30.53 0.12 -3.14 16 13 C 0.14 5.01 3.15 44.83 0.14 5.15 16 14 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 15 C 0.15 6.79 2.53 86.38 0.22 7.01 16 16 N -0.63 -30.50 2.22 -726.90 -1.61 -32.12 16 17 C 0.12 4.72 9.89 127.77 1.26 5.99 16 18 C -0.25 -14.47 9.89 84.03 0.83 -13.64 16 19 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 20 C -0.01 -0.38 5.32 84.86 0.45 0.08 16 21 N -0.94 -59.82 13.97 21.65 0.30 -59.52 16 22 Si 0.93 52.14 24.89 68.60 1.71 53.84 16 23 H -0.28 -15.61 6.13 99.48 0.61 -15.00 16 24 H -0.31 -17.56 7.11 99.48 0.71 -16.85 16 25 H -0.28 -15.79 7.11 99.48 0.71 -15.09 16 26 S 0.36 7.78 19.66 -56.49 -1.11 6.67 16 27 N -0.54 -13.27 11.03 -175.21 -1.93 -15.20 16 28 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.17 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.55 3.42 -22.29 -0.08 1.47 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 2.29 6.64 -2.39 -0.02 2.28 16 39 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 40 H 0.05 2.51 6.90 -2.38 -0.02 2.50 16 41 H 0.05 2.47 1.50 -2.39 0.00 2.46 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 43 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 44 H 0.06 2.06 6.33 -2.39 -0.02 2.05 16 45 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -75.91 358.31 1.51 -74.40 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.85 Total: 2.83 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 6.72 Total: 22.20 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.63 Total: -127.95 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.03 Total: -32.00 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 1.71 Total: 53.84 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -1.11 Total: 6.67 kcal Total: -75.91 1.51 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657063329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.849 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds