Wall clock time and date at job start Tue Mar 31 2020 23:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00067 * 2 1 4 4 C 1.53003 * 109.46929 * 66.04743 * 3 2 1 5 5 N 1.46500 * 109.46939 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99966 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99786 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99789 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46638 * 180.02562 * 8 6 5 10 10 C 1.76210 * 99.99844 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99581 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99985 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99925 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00075 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46745 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47156 * 119.99566 * 14 12 10 17 17 H 1.48498 * 109.47000 * 239.99806 * 14 12 10 18 18 C 1.46903 * 110.99691 * 236.05054 * 2 1 3 19 19 C 1.50696 * 109.47008 * 293.94934 * 18 2 1 20 20 C 1.35449 * 126.77663 * 89.98335 * 19 18 2 21 21 C 1.41387 * 103.98917 * 180.02562 * 20 19 18 22 22 C 1.50694 * 126.80435 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49958 * 343.74850 * 22 21 20 24 24 C 1.52995 * 117.50195 * 275.08673 * 22 21 20 25 25 N 1.30173 * 106.39214 * 0.02562 * 21 20 19 26 26 O 1.20923 * 111.60616 * 359.97438 * 25 21 20 27 27 H 1.08999 * 109.46847 * 183.95491 * 1 2 3 28 28 H 1.09006 * 109.46899 * 303.95227 * 1 2 3 29 29 H 1.09000 * 109.47593 * 63.94858 * 1 2 3 30 30 H 1.08995 * 109.47018 * 186.04944 * 3 2 1 31 31 H 1.09001 * 109.47162 * 306.05137 * 3 2 1 32 32 H 1.09007 * 109.46997 * 300.00039 * 4 3 2 33 33 H 1.09001 * 109.46877 * 60.00219 * 4 3 2 34 34 H 0.96996 * 119.99913 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.46803 * 299.99621 * 8 6 5 36 36 H 1.09001 * 109.47361 * 60.00253 * 8 6 5 37 37 H 0.97002 * 119.99834 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46966 * 173.95294 * 18 2 1 39 39 H 1.08996 * 109.47029 * 53.95146 * 18 2 1 40 40 H 1.08005 * 128.00762 * 359.97438 * 20 19 18 41 41 H 1.09005 * 115.55017 * 129.41236 * 22 21 20 42 42 H 1.08998 * 117.49821 * 359.97438 * 23 22 21 43 43 H 1.09000 * 117.50048 * 145.02131 * 23 22 21 44 44 H 1.08998 * 117.50084 * 214.97900 * 24 22 21 45 45 H 1.09006 * 117.49384 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1560 3.4253 1.3181 6 6 1.9554 4.2241 2.3850 7 8 1.3404 3.8106 3.3450 8 6 2.4955 5.6310 2.3849 9 16 2.0660 6.4420 3.9450 10 6 2.7979 8.0228 3.6796 11 1 3.3163 8.2295 2.7550 12 6 2.7090 9.0020 4.6593 13 7 2.0776 8.7499 5.7864 14 14 3.4855 10.6776 4.3783 15 1 4.1302 10.7063 3.0409 16 1 2.4364 11.7266 4.4441 17 1 4.5064 10.9321 5.4262 18 6 1.9954 -0.7659 -1.1377 19 6 1.6369 -2.2203 -0.9730 20 6 0.5182 -2.8360 -1.4247 21 6 0.6751 -4.1782 -1.0090 22 6 -0.2853 -5.3150 -1.2461 23 6 -1.7135 -4.9579 -1.6625 24 6 -1.4363 -5.4863 -0.2529 25 7 1.8132 -4.2372 -0.3797 26 8 2.3617 -3.1600 -0.3497 27 1 -0.3633 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8525 29 1 -0.3634 0.4513 -0.9232 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9274 -0.8309 32 1 0.5471 2.0844 1.4266 33 1 2.0659 1.5015 2.1492 34 1 2.6476 3.7561 0.5501 35 1 3.5797 5.6040 2.2763 36 1 2.0608 6.1871 1.5543 37 1 2.0151 9.4344 6.4709 38 1 3.0796 -0.6610 -1.1757 39 1 1.5610 -0.3871 -2.0628 40 1 -0.3039 -2.4019 -1.9745 41 1 0.1517 -6.2188 -1.6709 42 1 -1.9586 -3.9007 -1.7645 43 1 -2.2164 -5.6270 -2.3608 44 1 -1.7569 -6.5027 -0.0244 45 1 -1.4986 -4.7769 0.5724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:54 Heat of formation + Delta-G solvation = 58.755068 kcal Electronic energy + Delta-G solvation = -25279.569349 eV Core-core repulsion = 21427.960246 eV Total energy + Delta-G solvation = -3851.609104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.28872 -39.34832 -38.23675 -38.04155 -34.75494 -33.62312 -32.58578 -32.43165 -30.23145 -28.17440 -28.12540 -25.52278 -25.12825 -24.53697 -23.18769 -22.45815 -21.61912 -20.42041 -20.07540 -18.03084 -17.85004 -17.56252 -16.57197 -16.40279 -16.22122 -16.10447 -15.27494 -15.17123 -14.96461 -14.81278 -14.79895 -14.19949 -13.99585 -13.82160 -13.35391 -13.12804 -12.62488 -12.55895 -12.36353 -12.30798 -12.09290 -12.06058 -11.92139 -11.80583 -11.51012 -11.35712 -11.07356 -11.02359 -10.91682 -10.76299 -10.16921 -9.84108 -9.80858 -9.43330 -9.08255 -8.93086 -8.90146 -8.23419 -6.50360 -6.22138 -3.92717 1.03279 1.76225 2.63711 2.95248 3.09109 3.15448 3.21280 3.24898 3.30417 3.47327 3.62305 3.87664 4.05565 4.19874 4.28499 4.40345 4.44729 4.53598 4.61168 4.68581 4.75032 4.79218 5.02371 5.03291 5.08255 5.09662 5.13195 5.15455 5.17614 5.25551 5.31873 5.50819 5.52138 5.56139 5.60054 5.63447 5.71871 5.87450 5.89644 6.12826 6.38771 6.39582 6.61753 7.59406 7.67353 7.92693 8.34983 8.59954 9.23335 10.85358 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035622 B = 0.001460 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.835576 B =19172.221998 C =19470.211562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.534 5.534 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.740 5.740 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.132 3.868 19 C -0.013 4.013 20 C -0.224 4.224 21 C 0.046 3.954 22 C -0.088 4.088 23 C -0.163 4.163 24 C -0.162 4.162 25 N -0.358 5.358 26 O 0.112 5.888 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.397 0.603 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.169 0.831 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -25.233 -21.165 33.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.259 5.259 3 C -0.081 4.081 4 C -0.001 4.001 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.004 3.996 19 C -0.078 4.078 20 C -0.247 4.247 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.200 4.200 24 C -0.200 4.200 25 N -0.060 5.060 26 O 0.044 5.956 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.186 0.814 41 H 0.140 0.860 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.374 -27.086 -18.327 32.995 hybrid contribution 0.578 2.490 -2.815 3.802 sum -3.797 -24.596 -21.142 32.656 Atomic orbital electron populations 1.22627 0.86445 1.02935 1.01590 1.61749 1.08880 1.13506 1.41799 1.22279 1.01061 0.87424 0.97319 1.21186 0.99536 0.82211 0.97164 1.45902 1.59673 1.13573 1.20358 1.20296 0.79225 0.86845 0.81787 1.90713 1.39454 1.75129 1.33636 1.23526 1.03976 0.94956 1.07897 1.85426 1.73407 1.10991 1.13591 1.22911 1.41107 0.98425 1.05923 0.90864 1.24992 0.95156 0.98996 0.94439 1.70029 1.39813 1.34338 1.06079 0.86115 0.78876 0.82132 0.78356 1.19624 1.20580 1.20554 1.20488 1.02393 0.83708 0.93009 1.24200 0.92577 0.93876 0.97104 1.22341 1.00850 0.93225 1.08237 1.22598 0.94274 0.94953 0.99356 1.20103 0.87759 0.96463 1.06393 1.23036 0.95944 1.02680 0.98336 1.23043 1.00273 1.03215 0.93482 1.73855 1.10066 1.02977 1.19106 1.84874 1.41263 1.12473 1.56956 0.91048 0.90069 0.94937 0.89514 0.93574 0.91536 0.90547 0.76915 0.89159 0.89229 0.92227 0.87874 0.90875 0.81395 0.86005 0.88261 0.87768 0.87830 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.09 60.06 0.55 0.63 16 2 N -0.53 -4.00 4.75 -244.37 -1.16 -5.16 16 3 C 0.05 0.34 5.07 -3.82 -0.02 0.32 16 4 C 0.12 1.36 5.61 -4.04 -0.02 1.34 16 5 N -0.74 -9.24 5.56 -60.29 -0.33 -9.58 16 6 C 0.53 9.73 7.85 -10.98 -0.09 9.64 16 7 O -0.52 -11.68 15.86 5.56 0.09 -11.60 16 8 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 14 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.13 0.76 5.53 -4.98 -0.03 0.73 16 19 C -0.01 -0.10 6.36 -35.31 -0.22 -0.33 16 20 C -0.22 -1.61 9.07 -39.38 -0.36 -1.97 16 21 C 0.05 0.41 6.95 -82.10 -0.57 -0.16 16 22 C -0.09 -0.59 6.33 -91.78 -0.58 -1.17 16 23 C -0.16 -0.74 10.05 -26.69 -0.27 -1.01 16 24 C -0.16 -0.92 10.24 -26.70 -0.27 -1.20 16 25 N -0.36 -4.02 12.07 33.42 0.40 -3.62 16 26 O 0.11 1.18 11.20 17.17 0.19 1.37 16 27 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 28 H 0.08 0.66 6.30 -51.93 -0.33 0.33 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.53 7.93 -51.93 -0.41 0.11 16 31 H 0.05 0.28 8.12 -51.93 -0.42 -0.15 16 32 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.10 0.48 7.93 -51.93 -0.41 0.07 16 39 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.17 0.81 7.62 -52.48 -0.40 0.41 16 41 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.41 7.34 -51.93 -0.38 0.03 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -36.06 393.30 -9.56 -45.63 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.71 Total: -1.16 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.46 Total: -8.85 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.36 Total: -43.72 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.28 Total: -10.22 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.06 -9.56 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.382 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds