Wall clock time and date at job start Tue Mar 31 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00067 * 2 1 4 4 C 1.53003 * 109.46929 * 66.04743 * 3 2 1 5 5 N 1.46500 * 109.46939 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99966 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99786 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99789 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46638 * 180.02562 * 8 6 5 10 10 C 1.76210 * 99.99844 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99581 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99985 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99925 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00075 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46745 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47156 * 119.99566 * 14 12 10 17 17 H 1.48498 * 109.47000 * 239.99806 * 14 12 10 18 18 C 1.46903 * 110.99691 * 236.05054 * 2 1 3 19 19 C 1.50696 * 109.47008 * 293.94934 * 18 2 1 20 20 C 1.35449 * 126.77663 * 89.98335 * 19 18 2 21 21 C 1.41387 * 103.98917 * 180.02562 * 20 19 18 22 22 C 1.50694 * 126.80435 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49958 * 343.74850 * 22 21 20 24 24 C 1.52995 * 117.50195 * 275.08673 * 22 21 20 25 25 N 1.30173 * 106.39214 * 0.02562 * 21 20 19 26 26 O 1.20923 * 111.60616 * 359.97438 * 25 21 20 27 27 H 1.08999 * 109.46847 * 183.95491 * 1 2 3 28 28 H 1.09006 * 109.46899 * 303.95227 * 1 2 3 29 29 H 1.09000 * 109.47593 * 63.94858 * 1 2 3 30 30 H 1.08995 * 109.47018 * 186.04944 * 3 2 1 31 31 H 1.09001 * 109.47162 * 306.05137 * 3 2 1 32 32 H 1.09007 * 109.46997 * 300.00039 * 4 3 2 33 33 H 1.09001 * 109.46877 * 60.00219 * 4 3 2 34 34 H 0.96996 * 119.99913 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.46803 * 299.99621 * 8 6 5 36 36 H 1.09001 * 109.47361 * 60.00253 * 8 6 5 37 37 H 0.97002 * 119.99834 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46966 * 173.95294 * 18 2 1 39 39 H 1.08996 * 109.47029 * 53.95146 * 18 2 1 40 40 H 1.08005 * 128.00762 * 359.97438 * 20 19 18 41 41 H 1.09005 * 115.55017 * 129.41236 * 22 21 20 42 42 H 1.08998 * 117.49821 * 359.97438 * 23 22 21 43 43 H 1.09000 * 117.50048 * 145.02131 * 23 22 21 44 44 H 1.08998 * 117.50084 * 214.97900 * 24 22 21 45 45 H 1.09006 * 117.49384 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1560 3.4253 1.3181 6 6 1.9554 4.2241 2.3850 7 8 1.3404 3.8106 3.3450 8 6 2.4955 5.6310 2.3849 9 16 2.0660 6.4420 3.9450 10 6 2.7979 8.0228 3.6796 11 1 3.3163 8.2295 2.7550 12 6 2.7090 9.0020 4.6593 13 7 2.0776 8.7499 5.7864 14 14 3.4855 10.6776 4.3783 15 1 4.1302 10.7063 3.0409 16 1 2.4364 11.7266 4.4441 17 1 4.5064 10.9321 5.4262 18 6 1.9954 -0.7659 -1.1377 19 6 1.6369 -2.2203 -0.9730 20 6 0.5182 -2.8360 -1.4247 21 6 0.6751 -4.1782 -1.0090 22 6 -0.2853 -5.3150 -1.2461 23 6 -1.7135 -4.9579 -1.6625 24 6 -1.4363 -5.4863 -0.2529 25 7 1.8132 -4.2372 -0.3797 26 8 2.3617 -3.1600 -0.3497 27 1 -0.3633 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8525 29 1 -0.3634 0.4513 -0.9232 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9274 -0.8309 32 1 0.5471 2.0844 1.4266 33 1 2.0659 1.5015 2.1492 34 1 2.6476 3.7561 0.5501 35 1 3.5797 5.6040 2.2763 36 1 2.0608 6.1871 1.5543 37 1 2.0151 9.4344 6.4709 38 1 3.0796 -0.6610 -1.1757 39 1 1.5610 -0.3871 -2.0628 40 1 -0.3039 -2.4019 -1.9745 41 1 0.1517 -6.2188 -1.6709 42 1 -1.9586 -3.9007 -1.7645 43 1 -2.2164 -5.6270 -2.3608 44 1 -1.7569 -6.5027 -0.0244 45 1 -1.4986 -4.7769 0.5724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663146643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:53 Heat of formation + Delta-G solvation = 32.871542 kcal Electronic energy + Delta-G solvation = -25280.691743 eV Core-core repulsion = 21427.960246 eV Total energy + Delta-G solvation = -3852.731498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.94036 -40.64687 -38.95659 -38.50047 -35.87207 -34.57200 -34.24780 -33.31061 -31.50540 -29.23827 -28.64174 -27.64523 -25.75944 -25.25470 -23.69707 -22.93967 -22.31246 -21.77517 -20.61756 -19.81805 -18.68362 -18.22297 -17.81103 -17.39738 -16.99547 -16.86921 -16.77802 -16.25961 -16.23469 -15.72412 -15.39848 -15.33183 -15.00627 -14.73208 -14.58338 -14.33026 -13.93532 -13.53595 -13.14528 -13.08329 -12.96123 -12.89889 -12.84446 -12.61440 -12.50476 -12.49287 -12.39987 -12.17592 -12.02245 -11.69589 -11.37138 -11.14717 -10.98921 -10.69699 -10.46044 -10.25002 -10.09947 -9.42737 -8.65415 -8.33522 -6.11572 0.42585 1.17176 1.28657 1.42716 1.48644 1.59394 1.63138 2.08034 2.25930 2.29700 2.70632 3.00964 3.03625 3.13834 3.35693 3.54748 3.81146 3.83472 3.97120 4.01586 4.06884 4.09303 4.10664 4.23941 4.33413 4.33928 4.46444 4.53845 4.54192 4.55878 4.62481 4.70303 4.77622 4.89163 4.92977 4.96006 5.06712 5.07308 5.09277 5.19089 5.41251 5.43713 5.88380 5.91455 6.21450 6.53258 7.08067 7.27399 7.30073 8.75990 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035622 B = 0.001460 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.835576 B =19172.221998 C =19470.211562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.554 5.554 3 C 0.060 3.940 4 C 0.124 3.876 5 N -0.709 5.709 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.128 4.128 9 S -0.157 6.157 10 C -0.545 4.545 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.136 3.864 19 C -0.016 4.016 20 C -0.221 4.221 21 C 0.040 3.960 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.168 4.168 25 N -0.398 5.398 26 O 0.087 5.913 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.271 0.729 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.194 0.806 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.115 0.885 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -24.593 -24.654 35.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.280 5.280 3 C -0.068 4.068 4 C 0.000 4.000 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.447 6.447 8 C -0.279 4.279 9 S 0.070 5.930 10 C -0.692 4.692 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.201 1.201 18 C 0.008 3.992 19 C -0.081 4.081 20 C -0.243 4.243 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.179 4.179 24 C -0.206 4.206 25 N -0.104 5.104 26 O 0.023 5.977 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.211 0.789 41 H 0.141 0.859 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.939 -26.454 -21.887 34.559 hybrid contribution 0.420 2.151 -1.799 2.835 sum -3.519 -24.303 -23.685 34.118 Atomic orbital electron populations 1.22576 0.86429 1.02576 1.01803 1.61628 1.09125 1.13837 1.43380 1.22154 1.02243 0.87175 0.95227 1.21256 0.98709 0.81019 0.99053 1.45568 1.58195 1.13474 1.19202 1.20085 0.78842 0.86769 0.82425 1.90704 1.42064 1.75931 1.35972 1.23362 1.05407 0.95390 1.03750 1.85638 1.74522 1.12764 1.20029 1.23249 1.41017 0.98525 1.06453 0.89737 1.26133 0.95508 1.03606 0.93942 1.70196 1.41452 1.35947 1.07293 0.84897 0.77867 0.76175 0.78947 1.17870 1.19998 1.20057 1.20639 1.03325 0.81971 0.93286 1.24711 0.92492 0.94497 0.96355 1.22661 1.01263 0.92375 1.07952 1.23102 0.93892 0.96402 0.98403 1.20244 0.88374 0.96279 1.07853 1.23158 0.93765 1.03497 0.97475 1.23085 1.00007 1.03729 0.93813 1.73846 1.11609 1.03836 1.21076 1.84817 1.42102 1.12890 1.57882 0.91452 0.91803 0.92980 0.87781 0.91229 0.92555 0.92833 0.74355 0.87011 0.86905 0.92040 0.86673 0.88054 0.78853 0.85861 0.87548 0.85888 0.86688 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.09 127.69 1.16 1.33 16 2 N -0.55 -7.05 4.75 -927.05 -4.41 -11.46 16 3 C 0.06 0.66 5.07 86.30 0.44 1.10 16 4 C 0.12 2.56 5.61 86.38 0.48 3.05 16 5 N -0.71 -16.17 5.56 -463.04 -2.57 -18.75 16 6 C 0.53 19.10 7.85 87.66 0.69 19.79 16 7 O -0.57 -26.42 15.86 -3.04 -0.05 -26.47 16 8 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 9 S -0.16 -8.65 20.57 -56.49 -1.16 -9.82 16 10 C -0.54 -30.81 9.50 67.95 0.65 -30.17 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 14 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 15 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 18 C 0.14 1.17 5.53 85.56 0.47 1.64 16 19 C -0.02 -0.23 6.36 25.04 0.16 -0.07 16 20 C -0.22 -2.83 9.07 22.40 0.20 -2.63 16 21 C 0.04 0.70 6.95 43.58 0.30 1.01 16 22 C -0.11 -1.39 6.33 -11.54 -0.07 -1.46 16 23 C -0.14 -1.02 10.05 30.62 0.31 -0.71 16 24 C -0.17 -1.80 10.24 30.62 0.31 -1.49 16 25 N -0.40 -9.22 12.07 -49.55 -0.60 -9.81 16 26 O 0.09 1.86 11.20 71.61 0.80 2.66 16 27 H 0.07 0.87 6.34 -2.39 -0.02 0.86 16 28 H 0.06 1.00 6.30 -2.38 -0.02 0.99 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.84 7.93 -2.39 -0.02 0.83 16 31 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 32 H 0.06 1.32 6.47 -2.38 -0.02 1.30 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.42 6.05 8.47 -92.71 -0.79 5.27 16 35 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 36 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.12 0.73 7.93 -2.39 -0.02 0.71 16 39 H 0.10 0.35 8.12 -2.39 -0.02 0.33 16 40 H 0.19 1.29 7.62 -2.91 -0.02 1.27 16 41 H 0.12 1.47 8.14 -2.38 -0.02 1.46 16 42 H 0.11 0.62 7.34 -2.39 -0.02 0.60 16 43 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -82.96 393.30 0.56 -82.40 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.22 Total: 13.60 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 6.01 Total: -11.90 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -7.29 Total: -95.74 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.75 Total: -23.80 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -82.96 0.56 -82.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.273 kcal (2) G-P(sol) polarization free energy of solvation -82.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds