Wall clock time and date at job start Tue Mar 31 2020 23:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46705 * 95.02470 * 8 7 6 10 10 C 1.46893 * 110.99909 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47245 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.47406 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99636 * 269.99856 * 12 11 10 14 14 C 1.34769 * 120.00250 * 89.99931 * 12 11 10 15 15 O 1.21280 * 120.00190 * 359.97438 * 14 12 11 16 16 C 1.50701 * 119.99996 * 180.02562 * 14 12 11 17 17 S 1.81000 * 109.47084 * 179.97438 * 16 14 12 18 18 C 1.76198 * 100.00187 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00119 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00121 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00444 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47340 * 89.99739 * 22 20 18 24 24 H 1.48503 * 109.46861 * 210.00197 * 22 20 18 25 25 H 1.48503 * 109.46738 * 329.99509 * 22 20 18 26 26 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 27 27 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 28 28 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 30 30 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 32 32 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 33 33 H 1.08998 * 109.47460 * 215.02436 * 8 7 6 34 34 H 1.08997 * 109.47373 * 335.03060 * 8 7 6 35 35 H 1.00896 * 111.00145 * 303.95508 * 9 8 7 36 36 H 1.09003 * 109.47101 * 300.00434 * 10 9 8 37 37 H 1.09000 * 109.47102 * 60.00034 * 10 9 8 38 38 H 1.09003 * 109.47150 * 300.00067 * 11 10 9 39 39 H 1.09000 * 109.47318 * 59.99829 * 11 10 9 40 40 H 1.08997 * 109.47322 * 89.99956 * 13 12 11 41 41 H 1.08998 * 109.47292 * 209.99702 * 13 12 11 42 42 H 1.08997 * 109.47520 * 329.99845 * 13 12 11 43 43 H 1.08992 * 109.47093 * 299.99334 * 16 14 12 44 44 H 1.08996 * 109.47324 * 59.99905 * 16 14 12 45 45 H 0.96994 * 120.00465 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 7 0.6228 5.0683 -1.3790 10 6 -0.2297 6.2639 -1.4175 11 6 -0.6065 6.5751 -2.8673 12 7 -1.4562 7.7679 -2.9059 13 6 -2.9122 7.6333 -2.8140 14 6 -0.8986 8.9889 -3.0259 15 8 0.3067 9.1004 -3.1015 16 6 -1.7727 10.2159 -3.0650 17 16 -0.7358 11.6903 -3.2298 18 6 -1.9794 12.9383 -3.2503 19 1 -3.0210 12.6640 -3.1716 20 6 -1.6204 14.2740 -3.3665 21 7 -0.3508 14.6085 -3.4610 22 14 -2.9389 15.5972 -3.3876 23 1 -3.2100 16.0480 -1.9989 24 1 -2.4712 16.7491 -4.1997 25 1 -4.1837 15.0461 -3.9810 26 7 1.3188 2.3140 0.0000 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0230 0.3694 0.0098 31 1 5.1256 2.5944 0.0009 32 1 3.6996 4.6313 0.0006 33 1 0.1080 4.5470 0.5900 34 1 1.5538 5.5737 0.4352 35 1 1.4381 5.1870 -1.9613 36 1 -1.1349 6.0836 -0.8378 37 1 0.3112 7.1096 -0.9929 38 1 0.2986 6.7553 -3.4474 39 1 -1.1476 5.7293 -3.2916 40 1 -3.2155 7.6741 -1.7679 41 1 -3.3876 8.4467 -3.3621 42 1 -3.2167 6.6790 -3.2436 43 1 -2.4512 10.1517 -3.9155 44 1 -2.3506 10.2799 -2.1431 45 1 -0.0999 15.5419 -3.5418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691262854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:34 Heat of formation + Delta-G solvation = -28.819447 kcal Electronic energy + Delta-G solvation = -25482.101814 eV Core-core repulsion = 21626.695194 eV Total energy + Delta-G solvation = -3855.406620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97958 -39.52744 -38.44134 -36.62996 -35.11124 -32.92687 -32.44094 -31.77790 -30.19517 -28.46808 -27.54101 -26.50448 -25.56106 -25.06046 -23.28978 -22.42590 -22.21742 -19.22168 -18.47714 -17.70270 -17.34094 -16.66298 -16.37145 -16.33486 -16.15870 -15.77681 -15.33745 -14.83963 -14.81195 -14.64006 -14.46694 -13.90672 -13.77999 -13.40388 -13.25925 -13.21048 -12.87280 -12.80074 -12.55238 -12.40397 -12.17689 -12.12125 -11.99210 -11.74360 -11.46448 -11.13078 -11.07456 -11.03333 -10.76473 -10.23113 -9.92564 -9.81799 -9.40444 -9.07803 -8.88335 -8.71605 -8.54098 -8.24193 -6.51608 -6.22842 -3.93570 0.73888 0.95141 2.75679 2.87459 3.02923 3.21333 3.23546 3.28803 3.36287 3.58605 3.77011 4.16964 4.19245 4.45288 4.67320 4.74956 4.79288 4.86243 4.92477 4.99397 5.02404 5.10194 5.11927 5.13092 5.15793 5.20430 5.33838 5.42862 5.45651 5.48734 5.56043 5.61261 5.69252 5.80275 5.83318 5.87683 5.93873 6.06393 6.12381 6.51011 6.72500 6.88805 7.06141 7.50924 7.56859 7.58512 8.33986 8.53113 9.22488 10.84576 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.001673 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.199931 B =16735.801263 C =17446.996607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.320 3.680 4 C -0.193 4.193 5 C -0.040 4.040 6 C -0.204 4.204 7 C 0.175 3.825 8 C 0.108 3.892 9 N -0.678 5.678 10 C 0.045 3.955 11 C 0.121 3.879 12 N -0.624 5.624 13 C 0.081 3.919 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.063 6.063 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.521 5.521 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.344 0.656 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -27.934 7.419 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.214 4.214 5 C -0.065 4.065 6 C -0.225 4.225 7 C 0.037 3.963 8 C -0.021 4.021 9 N -0.310 5.310 10 C -0.086 4.086 11 C -0.002 4.002 12 N -0.360 5.360 13 C -0.062 4.062 14 C 0.321 3.679 15 O -0.390 6.390 16 C -0.301 4.301 17 S 0.164 5.836 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.244 5.244 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.302 -28.399 7.272 29.405 hybrid contribution -1.033 1.511 0.327 1.859 sum 1.269 -26.888 7.598 27.970 Atomic orbital electron populations 1.22862 0.77011 1.02852 1.02739 1.86231 1.23131 1.24546 1.87837 1.19834 0.89344 0.84707 0.92051 1.21083 0.92102 0.99663 1.08577 1.21403 1.00650 0.91126 0.93315 1.21893 0.94141 1.00224 1.06266 1.20731 0.91387 0.91524 0.92611 1.20804 0.98328 0.91688 0.91289 1.60364 1.23566 1.37977 1.09092 1.22343 0.97444 0.90513 0.98253 1.21257 0.96240 0.86909 0.95831 1.47819 1.07134 1.05990 1.75064 1.21786 0.79831 1.02891 1.01742 1.20374 0.88821 0.83705 0.75040 1.90686 1.14830 1.85681 1.47832 1.23558 1.03261 0.98477 1.04782 1.85382 1.09803 0.92562 1.95846 1.22858 0.94119 0.92925 1.58424 0.90931 1.24991 0.96119 0.97929 0.94530 1.70015 1.15506 1.18290 1.46471 0.86171 0.80806 0.80282 0.78258 1.20277 1.20739 1.19684 1.67086 1.40836 0.98221 1.18301 0.91995 0.88717 0.92307 0.84180 0.83978 0.84458 0.89120 0.92854 0.83849 0.90754 0.94090 0.89986 0.89996 0.92799 0.90614 0.91247 0.89202 0.89260 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.03 10.48 -18.73 -0.20 -3.23 16 3 C 0.32 3.29 7.49 -17.12 -0.13 3.16 16 4 C -0.19 -1.59 10.04 -39.28 -0.39 -1.99 16 5 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 6 C -0.20 -1.65 9.71 -39.43 -0.38 -2.04 16 7 C 0.17 1.70 6.29 -82.60 -0.52 1.18 16 8 C 0.11 1.00 5.99 -4.97 -0.03 0.97 16 9 N -0.68 -6.79 6.49 -115.06 -0.75 -7.54 16 10 C 0.04 0.49 6.01 -3.83 -0.02 0.47 16 11 C 0.12 1.45 5.71 -4.04 -0.02 1.42 16 12 N -0.62 -8.62 2.87 -181.58 -0.52 -9.14 16 13 C 0.08 0.83 10.29 59.85 0.62 1.44 16 14 C 0.53 9.98 7.69 -10.99 -0.08 9.90 16 15 O -0.52 -11.55 15.44 5.56 0.09 -11.46 16 16 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 N -0.52 -5.69 9.13 -9.55 -0.09 -5.78 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.01 16 30 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.45 8.04 -51.93 -0.42 0.03 16 35 H 0.34 3.35 8.72 -39.29 -0.34 3.01 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.11 7.42 -51.93 -0.39 0.72 16 39 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 42 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 43 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 44 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -35.31 397.68 -8.80 -44.11 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.87 Total: 0.54 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 0.05 Total: -0.54 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.62 Total: -47.77 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.11 Total: -14.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.31 -8.80 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691262854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.289 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds