Wall clock time and date at job start Tue Mar 31 2020 22:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47265 * 2 1 4 4 C 1.46500 * 119.99846 * 274.85747 * 3 2 1 5 5 C 1.53000 * 109.47168 * 269.99663 * 4 3 2 6 6 N 1.46501 * 109.47557 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00310 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99853 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00072 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47063 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99939 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99942 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00041 * 180.02562 * 11 10 9 14 14 N 1.31623 * 120.00062 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46972 * 60.00351 * 15 13 11 17 17 H 1.48499 * 109.47110 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47473 * 300.00154 * 15 13 11 19 19 C 1.34778 * 120.00156 * 94.85759 * 3 2 1 20 20 O 1.21692 * 120.00209 * 185.78686 * 19 3 2 21 21 C 1.46674 * 119.99899 * 5.77809 * 19 3 2 22 22 N 1.37654 * 126.23593 * 252.08082 * 21 19 3 23 23 H 0.97000 * 125.67563 * 359.69465 * 22 21 19 24 24 C 1.35533 * 108.64350 * 179.97438 * 22 21 19 25 25 C 1.35449 * 108.87665 * 359.97438 * 24 22 21 26 26 C 1.37878 * 126.23126 * 72.03462 * 21 19 3 27 27 C 1.50697 * 126.45892 * 0.03960 * 26 21 19 28 28 H 1.08996 * 109.47366 * 59.99813 * 1 2 3 29 29 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47531 * 299.99915 * 1 2 3 31 31 H 1.08999 * 109.46910 * 239.99706 * 2 1 3 32 32 H 1.09004 * 109.47328 * 119.99887 * 2 1 3 33 33 H 1.09000 * 109.47311 * 29.99545 * 4 3 2 34 34 H 1.09000 * 109.47020 * 150.00179 * 4 3 2 35 35 H 1.09004 * 109.47373 * 300.00266 * 5 4 3 36 36 H 1.09003 * 109.47115 * 59.99686 * 5 4 3 37 37 H 0.96999 * 119.99466 * 0.02562 * 6 5 4 38 38 H 1.08996 * 109.46857 * 300.00500 * 9 7 6 39 39 H 1.09005 * 109.46773 * 59.99960 * 9 7 6 40 40 H 0.97001 * 120.00127 * 179.97438 * 14 13 11 41 41 H 1.08007 * 125.56241 * 180.02562 * 24 22 21 42 42 H 1.08001 * 126.07583 * 179.97438 * 25 24 22 43 43 H 1.09000 * 109.47227 * 89.99215 * 27 26 21 44 44 H 1.08999 * 109.47083 * 209.99840 * 27 26 21 45 45 H 1.09005 * 109.46503 * 329.99634 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1612 2.1076 -1.2642 5 6 3.5661 1.8814 -1.8264 6 7 3.7088 2.6072 -3.0909 7 6 4.8708 2.5532 -3.7715 8 8 5.7985 1.9040 -3.3369 9 6 5.0174 3.2994 -5.0726 10 16 6.6795 3.0319 -5.7375 11 6 6.5764 3.9893 -7.2131 12 1 5.6629 4.5124 -7.4547 13 6 7.6688 4.0704 -8.0655 14 7 8.7816 3.4318 -7.7718 15 14 7.5592 5.0849 -9.6302 16 1 7.2688 6.4995 -9.2837 17 1 8.8502 5.0097 -10.3603 18 1 6.4719 4.5526 -10.4902 19 6 2.3361 1.9836 1.1630 20 8 2.6407 3.1618 1.1747 21 6 2.3148 1.2192 2.4146 22 7 1.3850 1.3351 3.4231 23 1 0.6294 1.9433 3.4287 24 6 1.7046 0.4622 4.4094 25 6 2.8232 -0.2128 4.0518 26 6 3.2220 0.2531 2.7950 27 6 4.4178 -0.2130 2.0053 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4215 1.7442 -1.9776 34 1 2.0064 3.1725 -1.0908 35 1 4.3058 2.2447 -1.1130 36 1 3.7209 0.8164 -1.9997 37 1 2.9670 3.1267 -3.4383 38 1 4.2775 2.9356 -5.7854 39 1 4.8626 4.3645 -4.8999 40 1 9.5449 3.4881 -8.3677 41 1 1.1563 0.3263 5.3300 42 1 3.3197 -0.9748 4.6343 43 1 5.2843 0.3950 2.2652 44 1 4.6233 -1.2575 2.2396 45 1 4.2106 -0.1136 0.9398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704263271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:47 Heat of formation + Delta-G solvation = -29.632090 kcal Electronic energy + Delta-G solvation = -26361.459685 eV Core-core repulsion = 22506.017827 eV Total energy + Delta-G solvation = -3855.441858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77243 -39.84360 -38.99627 -36.61385 -34.66887 -32.98840 -32.41299 -31.58055 -30.48059 -29.69323 -28.10610 -26.88158 -25.46770 -23.94056 -23.73438 -21.55642 -20.85201 -20.38693 -19.14848 -18.27275 -17.82088 -17.09422 -16.58643 -16.24296 -15.70610 -15.35910 -15.06908 -14.78810 -14.62553 -14.32642 -14.21842 -13.93980 -13.83145 -13.76644 -13.47378 -13.14461 -13.11102 -12.95151 -12.56638 -12.53239 -12.39477 -12.24159 -12.07338 -11.83661 -11.56112 -11.40119 -11.02961 -11.02372 -10.76088 -10.41332 -9.81589 -9.45772 -9.16436 -9.11133 -9.04892 -8.90243 -8.43000 -8.22128 -6.48162 -6.19733 -3.90354 1.47278 2.00615 2.35160 2.57077 3.03646 3.11425 3.15256 3.24852 3.29322 3.35447 3.79052 4.15571 4.22139 4.51373 4.60859 4.68857 4.75218 4.79461 4.85085 4.96936 5.00162 5.15075 5.15406 5.19619 5.28319 5.35599 5.40615 5.52985 5.61902 5.64259 5.66445 5.70177 5.82033 5.84362 5.91177 5.96487 6.09375 6.15607 6.46955 6.58745 6.62096 6.87586 7.04888 7.60871 7.67806 7.71582 8.36729 8.61836 9.25307 10.87634 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.001890 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.669156 B =14811.972282 C =15198.868607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.596 5.596 4 C 0.104 3.896 5 C 0.107 3.893 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.515 6.515 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.591 3.409 20 O -0.523 6.523 21 C -0.040 4.040 22 N -0.530 5.530 23 H 0.418 0.582 24 C 0.009 3.991 25 C -0.200 4.200 26 C -0.112 4.112 27 C -0.092 4.092 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.170 0.830 42 H 0.142 0.858 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 -8.885 22.574 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.330 5.330 4 C -0.019 4.019 5 C -0.018 4.018 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.389 6.389 9 C -0.303 4.303 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.378 3.622 20 O -0.398 6.398 21 C -0.154 4.154 22 N -0.124 5.124 23 H 0.255 0.745 24 C -0.125 4.125 25 C -0.224 4.224 26 C -0.120 4.120 27 C -0.149 4.149 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.187 0.813 42 H 0.160 0.840 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.981 -9.277 23.234 32.017 hybrid contribution -1.911 1.872 -1.535 3.084 sum -21.892 -7.405 21.699 31.701 Atomic orbital electron populations 1.22146 0.95607 1.02520 1.02165 1.21767 0.94559 0.81770 1.04504 1.47743 1.64693 1.14966 1.05571 1.21634 0.96752 0.98900 0.84602 1.21563 0.96691 0.97431 0.86137 1.45828 1.16187 1.53590 1.23625 1.20305 0.81540 0.80846 0.85408 1.90707 1.38709 1.40885 1.68624 1.23528 1.08000 1.02525 0.96296 1.85408 1.06173 1.66339 1.25385 1.22828 1.02297 1.35388 1.07916 0.90966 1.24991 0.94506 0.95759 0.98344 1.70006 1.02774 1.40247 1.37251 0.86223 0.77562 0.80138 0.81560 1.19944 1.20818 1.19954 1.17239 0.76700 0.85742 0.82539 1.90882 1.46699 1.15465 1.86733 1.19831 0.97444 1.05541 0.92617 1.41739 1.23483 1.32184 1.15008 0.74511 1.21922 1.00380 0.95513 0.94709 1.20734 0.98983 1.05240 0.97477 1.19863 0.97924 0.97309 0.96910 1.20305 0.94562 1.01307 0.98724 0.92174 0.91154 0.92932 0.89804 0.88868 0.89429 0.88870 0.91235 0.91404 0.76794 0.89172 0.89146 0.92131 0.81308 0.84037 0.91206 0.91115 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.15 0.38 -0.46 16 2 C 0.10 0.62 5.84 -4.05 -0.02 0.59 16 3 N -0.60 -5.28 2.47 -175.24 -0.43 -5.71 16 4 C 0.10 0.93 5.59 -4.04 -0.02 0.91 16 5 C 0.11 1.31 6.00 -4.04 -0.02 1.29 16 6 N -0.74 -9.92 5.56 -60.29 -0.33 -10.25 16 7 C 0.53 10.11 7.85 -10.99 -0.09 10.02 16 8 O -0.52 -11.96 15.86 5.56 0.09 -11.87 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.11 5.49 -17.44 -0.10 2.01 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 C 0.59 6.72 7.16 -12.85 -0.09 6.63 16 20 O -0.52 -8.01 16.66 5.20 0.09 -7.93 16 21 C -0.04 -0.39 5.46 -81.98 -0.45 -0.83 16 22 N -0.53 -3.68 6.10 -9.39 -0.06 -3.74 16 23 H 0.42 2.00 8.96 -40.82 -0.37 1.64 16 24 C 0.01 0.05 11.89 -16.91 -0.20 -0.15 16 25 C -0.20 -1.50 10.76 -39.98 -0.43 -1.93 16 26 C -0.11 -1.04 5.13 -104.15 -0.53 -1.58 16 27 C -0.09 -0.82 9.99 36.00 0.36 -0.46 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.09 0.62 5.44 -51.93 -0.28 0.34 16 33 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.09 0.92 7.35 -51.93 -0.38 0.54 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.17 0.45 8.06 -52.48 -0.42 0.02 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.59 7.57 -51.93 -0.39 0.19 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -38.23 397.86 -8.66 -46.89 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.80 Total: 1.49 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.70 Total: -1.92 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.09 Total: -45.31 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.17 Total: -19.80 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.23 -8.66 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704263271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.256 kcal (2) G-P(sol) polarization free energy of solvation -38.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds