Wall clock time and date at job start Tue Mar 31 2020 22:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47265 * 2 1 4 4 C 1.46500 * 119.99846 * 274.85747 * 3 2 1 5 5 C 1.53000 * 109.47168 * 269.99663 * 4 3 2 6 6 N 1.46501 * 109.47557 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00310 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99853 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00072 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47063 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99939 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99942 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00041 * 180.02562 * 11 10 9 14 14 N 1.31623 * 120.00062 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46972 * 60.00351 * 15 13 11 17 17 H 1.48499 * 109.47110 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47473 * 300.00154 * 15 13 11 19 19 C 1.34778 * 120.00156 * 94.85759 * 3 2 1 20 20 O 1.21692 * 120.00209 * 185.78686 * 19 3 2 21 21 C 1.46674 * 119.99899 * 5.77809 * 19 3 2 22 22 N 1.37654 * 126.23593 * 252.08082 * 21 19 3 23 23 H 0.97000 * 125.67563 * 359.69465 * 22 21 19 24 24 C 1.35533 * 108.64350 * 179.97438 * 22 21 19 25 25 C 1.35449 * 108.87665 * 359.97438 * 24 22 21 26 26 C 1.37878 * 126.23126 * 72.03462 * 21 19 3 27 27 C 1.50697 * 126.45892 * 0.03960 * 26 21 19 28 28 H 1.08996 * 109.47366 * 59.99813 * 1 2 3 29 29 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47531 * 299.99915 * 1 2 3 31 31 H 1.08999 * 109.46910 * 239.99706 * 2 1 3 32 32 H 1.09004 * 109.47328 * 119.99887 * 2 1 3 33 33 H 1.09000 * 109.47311 * 29.99545 * 4 3 2 34 34 H 1.09000 * 109.47020 * 150.00179 * 4 3 2 35 35 H 1.09004 * 109.47373 * 300.00266 * 5 4 3 36 36 H 1.09003 * 109.47115 * 59.99686 * 5 4 3 37 37 H 0.96999 * 119.99466 * 0.02562 * 6 5 4 38 38 H 1.08996 * 109.46857 * 300.00500 * 9 7 6 39 39 H 1.09005 * 109.46773 * 59.99960 * 9 7 6 40 40 H 0.97001 * 120.00127 * 179.97438 * 14 13 11 41 41 H 1.08007 * 125.56241 * 180.02562 * 24 22 21 42 42 H 1.08001 * 126.07583 * 179.97438 * 25 24 22 43 43 H 1.09000 * 109.47227 * 89.99215 * 27 26 21 44 44 H 1.08999 * 109.47083 * 209.99840 * 27 26 21 45 45 H 1.09005 * 109.46503 * 329.99634 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1612 2.1076 -1.2642 5 6 3.5661 1.8814 -1.8264 6 7 3.7088 2.6072 -3.0909 7 6 4.8708 2.5532 -3.7715 8 8 5.7985 1.9040 -3.3369 9 6 5.0174 3.2994 -5.0726 10 16 6.6795 3.0319 -5.7375 11 6 6.5764 3.9893 -7.2131 12 1 5.6629 4.5124 -7.4547 13 6 7.6688 4.0704 -8.0655 14 7 8.7816 3.4318 -7.7718 15 14 7.5592 5.0849 -9.6302 16 1 7.2688 6.4995 -9.2837 17 1 8.8502 5.0097 -10.3603 18 1 6.4719 4.5526 -10.4902 19 6 2.3361 1.9836 1.1630 20 8 2.6407 3.1618 1.1747 21 6 2.3148 1.2192 2.4146 22 7 1.3850 1.3351 3.4231 23 1 0.6294 1.9433 3.4287 24 6 1.7046 0.4622 4.4094 25 6 2.8232 -0.2128 4.0518 26 6 3.2220 0.2531 2.7950 27 6 4.4178 -0.2130 2.0053 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4215 1.7442 -1.9776 34 1 2.0064 3.1725 -1.0908 35 1 4.3058 2.2447 -1.1130 36 1 3.7209 0.8164 -1.9997 37 1 2.9670 3.1267 -3.4383 38 1 4.2775 2.9356 -5.7854 39 1 4.8626 4.3645 -4.8999 40 1 9.5449 3.4881 -8.3677 41 1 1.1563 0.3263 5.3300 42 1 3.3197 -0.9748 4.6343 43 1 5.2843 0.3950 2.2652 44 1 4.6233 -1.2575 2.2396 45 1 4.2106 -0.1136 0.9398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704263271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:46 Heat of formation + Delta-G solvation = -57.252327 kcal Electronic energy + Delta-G solvation = -26362.657389 eV Core-core repulsion = 22506.017827 eV Total energy + Delta-G solvation = -3856.639562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.40163 -40.82786 -40.28240 -37.50641 -35.88259 -34.58166 -33.62818 -32.50862 -31.23488 -30.77103 -29.11150 -27.75737 -27.52947 -24.67746 -24.50351 -22.25326 -21.88227 -21.38775 -19.95734 -19.70055 -18.91101 -18.08748 -17.62814 -17.54008 -16.87529 -16.82633 -16.60840 -15.99295 -15.70008 -15.34587 -15.14528 -14.94907 -14.77678 -14.62864 -14.41179 -14.37755 -14.03209 -13.83430 -13.66554 -13.56762 -13.16846 -13.16195 -13.11810 -12.87099 -12.84396 -12.62201 -12.49117 -12.41153 -12.05008 -11.75390 -11.30798 -11.12551 -11.03165 -10.28050 -10.21153 -9.97328 -9.68807 -9.04448 -8.66950 -8.34021 -6.12544 0.79658 1.24258 1.28331 1.44364 1.44735 1.54324 1.57935 1.71949 1.95159 2.27528 2.35099 2.58091 2.99933 3.32424 3.50348 3.75234 3.93229 3.97851 4.05103 4.18641 4.25276 4.29106 4.30688 4.35414 4.44139 4.50805 4.53166 4.66090 4.76114 4.78065 4.83056 4.87132 4.95474 5.07423 5.13870 5.27319 5.29866 5.38120 5.42057 5.43891 5.87540 6.01425 6.13332 6.20108 6.45086 6.58688 6.88882 7.06925 7.20369 8.74981 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.001890 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.669156 B =14811.972282 C =15198.868607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 N -0.589 5.589 4 C 0.112 3.888 5 C 0.113 3.887 6 N -0.709 5.709 7 C 0.534 3.466 8 O -0.566 6.566 9 C -0.128 4.128 10 S -0.154 6.154 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.260 1.260 19 C 0.590 3.410 20 O -0.574 6.574 21 C -0.067 4.067 22 N -0.524 5.524 23 H 0.427 0.573 24 C 0.030 3.970 25 C -0.219 4.219 26 C -0.124 4.124 27 C -0.091 4.091 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.419 0.581 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.209 0.791 42 H 0.156 0.844 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.028 -8.963 22.673 34.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.028 4.028 3 N -0.320 5.320 4 C -0.011 4.011 5 C -0.013 4.013 6 N -0.364 5.364 7 C 0.320 3.680 8 O -0.444 6.444 9 C -0.279 4.279 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.185 1.185 19 C 0.378 3.622 20 O -0.453 6.453 21 C -0.181 4.181 22 N -0.119 5.119 23 H 0.266 0.734 24 C -0.105 4.105 25 C -0.243 4.243 26 C -0.133 4.133 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.257 0.743 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.225 0.775 42 H 0.174 0.826 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.331 -9.367 23.337 34.302 hybrid contribution -0.983 1.824 -1.421 2.513 sum -24.314 -7.543 21.915 33.591 Atomic orbital electron populations 1.22094 0.94038 1.03476 1.02147 1.21956 0.95733 0.80188 1.04921 1.47836 1.63516 1.15812 1.04872 1.21605 0.95247 0.98965 0.85310 1.21589 0.98098 0.97001 0.84599 1.45504 1.15018 1.52679 1.23186 1.20117 0.82346 0.80314 0.85234 1.90697 1.40781 1.43173 1.69714 1.23362 1.03348 1.04025 0.97193 1.85614 1.12999 1.67244 1.26787 1.23176 1.02980 1.35355 1.07915 0.89767 1.26151 0.93901 0.96922 1.02306 1.70180 1.03743 1.42007 1.38861 0.84991 0.77951 0.78429 0.76533 1.18757 1.20442 1.18480 1.17574 0.75742 0.85226 0.83704 1.90845 1.49256 1.17667 1.87553 1.19664 0.99069 1.06399 0.92974 1.41802 1.23279 1.32355 1.14484 0.73376 1.22549 0.99479 0.93514 0.94964 1.21008 0.99936 1.06265 0.97055 1.20029 0.97789 0.97581 0.97871 1.20286 0.94244 1.02093 0.98201 0.91736 0.89690 0.93380 0.88758 0.89145 0.85699 0.89571 0.94493 0.91233 0.74294 0.86602 0.87249 0.92002 0.77480 0.82592 0.92729 0.89440 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.24 71.98 0.74 -0.49 16 2 C 0.09 1.05 5.84 86.38 0.50 1.56 16 3 N -0.59 -10.02 2.47 -826.54 -2.04 -12.07 16 4 C 0.11 1.85 5.59 86.38 0.48 2.33 16 5 C 0.11 2.71 6.00 86.38 0.52 3.23 16 6 N -0.71 -18.16 5.56 -463.06 -2.57 -20.73 16 7 C 0.53 20.15 7.85 87.66 0.69 20.84 16 8 O -0.57 -27.08 15.86 -3.02 -0.05 -27.13 16 9 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 10 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 11 C -0.55 -31.39 9.50 67.95 0.65 -30.75 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 13 C 0.01 0.68 5.49 84.86 0.47 1.15 16 14 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 15 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 19 C 0.59 13.62 7.16 86.45 0.62 14.23 16 20 O -0.57 -18.32 16.66 -4.32 -0.07 -18.39 16 21 C -0.07 -1.27 5.46 40.35 0.22 -1.05 16 22 N -0.52 -6.53 6.10 -183.62 -1.12 -7.65 16 23 H 0.43 3.46 8.96 -92.71 -0.83 2.63 16 24 C 0.03 0.28 11.89 83.48 0.99 1.27 16 25 C -0.22 -2.94 10.76 22.01 0.24 -2.71 16 26 C -0.12 -2.28 5.13 -19.56 -0.10 -2.38 16 27 C -0.09 -1.69 9.99 71.24 0.71 -0.98 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.88 8.11 -2.39 -0.02 0.86 16 32 H 0.09 1.12 5.44 -2.38 -0.01 1.11 16 33 H 0.13 1.17 8.07 -2.39 -0.02 1.16 16 34 H 0.09 1.62 7.35 -2.39 -0.02 1.60 16 35 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 7.32 8.47 -92.71 -0.79 6.54 16 38 H 0.12 4.02 8.14 -2.40 -0.02 4.00 16 39 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 1.05 7.57 -2.38 -0.02 1.03 16 Total: -1.00 -87.65 397.86 1.86 -85.80 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.60 Total: 18.77 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 7.16 Total: 1.60 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -5.45 Total: -96.69 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.12 Total: -45.52 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -87.65 1.86 -85.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704263271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.545 kcal (2) G-P(sol) polarization free energy of solvation -87.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds