Wall clock time and date at job start Tue Mar 31 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.46686 * 2 1 4 4 C 1.46893 * 111.00368 * 76.02725 * 3 2 1 5 5 C 1.53004 * 109.47620 * 199.54375 * 4 3 2 6 6 N 1.46493 * 109.47463 * 174.88548 * 5 4 3 7 7 C 1.34782 * 119.99870 * 180.02562 * 6 5 4 8 8 O 1.21702 * 120.00201 * 359.97438 * 7 6 5 9 9 C 1.46582 * 119.99982 * 180.02562 * 7 6 5 10 10 S 1.75836 * 125.45768 * 359.97438 * 9 7 6 11 11 C 1.70615 * 91.56383 * 180.02562 * 10 9 7 12 12 C 1.33821 * 110.95062 * 359.73567 * 11 10 9 13 13 C 1.36644 * 125.45849 * 179.97438 * 9 7 6 14 14 C 1.50701 * 123.35405 * 359.97438 * 13 9 7 15 15 C 1.46905 * 110.99932 * 199.98073 * 3 2 1 16 16 C 1.50697 * 109.47043 * 66.04448 * 15 3 2 17 17 O 1.21295 * 120.00440 * 0.02562 * 16 15 3 18 18 N 1.34782 * 120.00148 * 180.02562 * 16 15 3 19 19 C 1.37092 * 119.99959 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00572 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99561 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00181 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46980 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46794 * 119.99968 * 23 21 19 26 26 H 1.48503 * 109.47044 * 240.00199 * 23 21 19 27 27 H 1.09005 * 109.47246 * 294.87237 * 1 2 3 28 28 H 1.09000 * 109.47466 * 54.87743 * 1 2 3 29 29 H 1.09004 * 109.46961 * 174.87281 * 1 2 3 30 30 H 1.09000 * 109.47338 * 239.99759 * 2 1 3 31 31 H 1.09003 * 109.47089 * 119.99476 * 2 1 3 32 32 H 1.09002 * 109.47465 * 79.54619 * 4 3 2 33 33 H 1.09000 * 109.47523 * 319.54393 * 4 3 2 34 34 H 1.09003 * 109.46700 * 54.88403 * 5 4 3 35 35 H 1.09002 * 109.46961 * 294.89226 * 5 4 3 36 36 H 0.97003 * 120.00292 * 0.02562 * 6 5 4 37 37 H 1.08002 * 124.52549 * 179.97438 * 11 10 9 38 38 H 1.08000 * 122.44311 * 180.25407 * 12 11 10 39 39 H 1.09002 * 109.46779 * 90.00346 * 14 13 9 40 40 H 1.08996 * 109.47123 * 210.00002 * 14 13 9 41 41 H 1.08996 * 109.46837 * 330.00776 * 14 13 9 42 42 H 1.08993 * 109.47380 * 186.04235 * 15 3 2 43 43 H 1.08999 * 109.46759 * 306.04675 * 15 3 2 44 44 H 0.96996 * 119.99507 * 0.02562 * 18 16 15 45 45 H 0.97006 * 120.00139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.8828 1.9918 1.3308 5 6 1.9277 3.5158 1.2036 6 7 1.6696 4.1229 2.5116 7 6 1.6594 5.4644 2.6417 8 8 1.8650 6.1714 1.6727 9 6 1.4017 6.0718 3.9506 10 16 1.0889 5.1912 5.4400 11 6 0.9278 6.6439 6.3201 12 6 1.1075 7.7064 5.5267 13 6 1.3660 7.4132 4.2088 14 6 1.5933 8.4661 3.1549 15 6 3.4102 1.4518 -0.4686 16 6 3.4711 1.0500 -1.9198 17 8 2.4559 0.7390 -2.5062 18 7 4.6537 1.0361 -2.5662 19 6 4.7092 0.6700 -3.8862 20 1 3.8052 0.3932 -4.4083 21 6 5.9285 0.6552 -4.5523 22 7 7.0285 0.9916 -3.9170 23 14 6.0042 0.1557 -6.3508 24 1 4.6383 -0.1749 -6.8306 25 1 6.5521 1.2785 -7.1537 26 1 6.8823 -1.0328 -6.4979 27 1 -0.3634 0.4322 0.9324 28 1 -0.3634 0.5912 -0.8405 29 1 -0.3633 -1.0236 -0.0918 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7004 1.6563 1.9688 33 1 0.9318 1.6918 1.7709 34 1 1.1675 3.8437 0.4944 35 1 2.9118 3.8220 0.8486 36 1 1.5060 3.5594 3.2841 37 1 0.7136 6.6986 7.3773 38 1 1.0502 8.7203 5.8944 39 1 0.6410 8.7326 2.6964 40 1 2.0354 9.3503 3.6141 41 1 2.2676 8.0770 2.3921 42 1 3.7825 2.4702 -0.3578 43 1 4.0257 0.7735 0.1223 44 1 5.4656 1.2844 -2.0972 45 1 7.8798 0.9810 -4.3820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713479566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:22 Heat of formation + Delta-G solvation = -35.323408 kcal Electronic energy + Delta-G solvation = -26310.702292 eV Core-core repulsion = 22455.013639 eV Total energy + Delta-G solvation = -3855.688653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.07705 -38.83018 -38.11181 -36.84323 -34.81083 -33.80312 -31.42661 -31.26745 -30.86025 -29.68326 -28.03836 -26.13354 -24.29759 -23.86955 -22.80078 -21.46101 -20.93568 -19.27948 -19.02419 -18.43728 -17.84243 -16.37544 -16.24772 -15.91966 -15.69054 -15.35755 -15.09895 -14.67885 -14.43763 -14.21141 -14.00588 -13.79161 -13.69994 -13.52650 -13.34111 -13.10013 -12.62636 -12.43611 -12.37256 -12.17344 -12.05736 -11.73168 -11.58616 -11.46838 -11.42726 -11.26663 -11.11540 -10.79241 -10.51976 -10.32060 -10.20085 -10.05265 -9.45470 -9.34879 -9.04579 -8.79844 -8.41965 -7.97623 -7.90090 -6.39297 -3.79855 0.17717 1.12076 1.50562 2.04808 2.86826 3.00300 3.18223 3.28740 3.35969 3.92142 4.03880 4.26498 4.49296 4.57333 4.81696 4.86978 4.98014 5.00480 5.12950 5.26516 5.27672 5.35616 5.42994 5.50828 5.58400 5.60080 5.70996 5.79371 5.82804 5.87127 5.89711 5.97535 6.02076 6.09421 6.20039 6.28972 6.31253 6.46305 6.56873 7.23003 7.26240 7.36540 7.57869 7.99660 8.08974 8.64184 9.20729 9.57112 10.08667 10.78558 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.002114 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.635980 B =13240.734598 C =14359.221952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.511 5.511 4 C 0.043 3.957 5 C 0.122 3.878 6 N -0.725 5.725 7 C 0.590 3.410 8 O -0.520 6.520 9 C -0.272 4.272 10 S 0.190 5.810 11 C -0.226 4.226 12 C -0.148 4.148 13 C -0.020 4.020 14 C -0.107 4.107 15 C 0.042 3.958 16 C 0.444 3.556 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.395 0.605 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 8.665 23.812 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.085 4.085 5 C -0.001 4.001 6 N -0.377 5.377 7 C 0.376 3.624 8 O -0.397 6.397 9 C -0.392 4.392 10 S 0.458 5.542 11 C -0.364 4.364 12 C -0.179 4.179 13 C -0.035 4.035 14 C -0.166 4.166 15 C -0.090 4.090 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.153 7.641 22.688 26.410 hybrid contribution 1.196 0.780 0.321 1.464 sum -9.956 8.421 23.009 26.447 Atomic orbital electron populations 1.21694 0.95253 1.01101 1.01598 1.22166 0.96020 0.87850 1.01391 1.61441 1.20054 1.19593 1.22501 1.22256 1.01544 0.93538 0.91207 1.21402 1.02953 0.92265 0.83475 1.45805 1.73371 1.06121 1.12431 1.16861 0.77057 0.81965 0.86510 1.90822 1.49041 1.61147 1.38739 1.24439 1.19286 0.97584 0.97908 1.82950 1.65560 1.07927 0.97754 1.25248 1.08612 0.97402 1.05144 1.19963 1.05048 1.00483 0.92442 1.19574 0.95525 0.93136 0.95268 1.20766 1.03438 0.95389 0.96991 1.21954 0.88919 1.01971 0.96106 1.19697 0.84569 0.84911 0.87901 1.90511 1.34068 1.53178 1.68181 1.41879 1.07445 1.59459 1.11388 1.19740 0.95125 1.41742 0.86032 0.87847 1.25263 0.94826 0.97552 1.00389 1.69620 0.98689 1.48562 1.37463 0.85810 0.78505 0.78034 0.82053 1.19221 1.20754 1.20825 0.93921 0.91362 0.92837 0.88427 0.95917 0.94254 0.90180 0.89826 0.90914 0.77170 0.81361 0.83706 0.90539 0.91612 0.88670 0.89260 0.93366 0.77524 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.96 37.16 0.37 -1.52 16 2 C 0.05 0.83 5.18 -3.83 -0.02 0.81 16 3 N -0.51 -8.19 4.10 -236.08 -0.97 -9.16 16 4 C 0.04 0.52 4.92 -3.83 -0.02 0.50 16 5 C 0.12 1.56 5.70 -4.04 -0.02 1.54 16 6 N -0.73 -7.90 5.55 -61.65 -0.34 -8.24 16 7 C 0.59 7.57 7.78 -12.89 -0.10 7.47 16 8 O -0.52 -8.44 14.24 5.19 0.07 -8.37 16 9 C -0.27 -2.85 6.45 -36.79 -0.24 -3.09 16 10 S 0.19 1.35 22.16 -107.50 -2.38 -1.04 16 11 C -0.23 -1.46 10.92 29.18 0.32 -1.14 16 12 C -0.15 -1.11 9.97 -41.41 -0.41 -1.53 16 13 C -0.02 -0.20 5.90 -105.48 -0.62 -0.82 16 14 C -0.11 -1.03 9.55 36.01 0.34 -0.69 16 15 C 0.04 0.74 5.28 -4.97 -0.03 0.71 16 16 C 0.44 10.41 7.29 -10.98 -0.08 10.33 16 17 O -0.58 -15.31 14.12 5.54 0.08 -15.23 16 18 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 23 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.04 0.49 6.91 -51.93 -0.36 0.13 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.88 5.85 -51.93 -0.30 1.57 16 31 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 32 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 33 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 36 H 0.39 3.22 7.59 -40.82 -0.31 2.91 16 37 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.15 6.01 -51.93 -0.31 0.83 16 42 H 0.09 1.47 6.71 -51.93 -0.35 1.13 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -33.06 384.38 -9.23 -42.29 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.38 Total: 11.56 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.75 Total: 4.62 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.64 Total: -55.83 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.15 Total: -23.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.38 Total: -1.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.06 -9.23 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713479566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.971 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds