Wall clock time and date at job start Tue Mar 31 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.46686 * 2 1 4 4 C 1.46893 * 111.00368 * 76.02725 * 3 2 1 5 5 C 1.53004 * 109.47620 * 199.54375 * 4 3 2 6 6 N 1.46493 * 109.47463 * 174.88548 * 5 4 3 7 7 C 1.34782 * 119.99870 * 180.02562 * 6 5 4 8 8 O 1.21702 * 120.00201 * 359.97438 * 7 6 5 9 9 C 1.46582 * 119.99982 * 180.02562 * 7 6 5 10 10 S 1.75836 * 125.45768 * 359.97438 * 9 7 6 11 11 C 1.70615 * 91.56383 * 180.02562 * 10 9 7 12 12 C 1.33821 * 110.95062 * 359.73567 * 11 10 9 13 13 C 1.36644 * 125.45849 * 179.97438 * 9 7 6 14 14 C 1.50701 * 123.35405 * 359.97438 * 13 9 7 15 15 C 1.46905 * 110.99932 * 199.98073 * 3 2 1 16 16 C 1.50697 * 109.47043 * 66.04448 * 15 3 2 17 17 O 1.21295 * 120.00440 * 0.02562 * 16 15 3 18 18 N 1.34782 * 120.00148 * 180.02562 * 16 15 3 19 19 C 1.37092 * 119.99959 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00572 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99561 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00181 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46980 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46794 * 119.99968 * 23 21 19 26 26 H 1.48503 * 109.47044 * 240.00199 * 23 21 19 27 27 H 1.09005 * 109.47246 * 294.87237 * 1 2 3 28 28 H 1.09000 * 109.47466 * 54.87743 * 1 2 3 29 29 H 1.09004 * 109.46961 * 174.87281 * 1 2 3 30 30 H 1.09000 * 109.47338 * 239.99759 * 2 1 3 31 31 H 1.09003 * 109.47089 * 119.99476 * 2 1 3 32 32 H 1.09002 * 109.47465 * 79.54619 * 4 3 2 33 33 H 1.09000 * 109.47523 * 319.54393 * 4 3 2 34 34 H 1.09003 * 109.46700 * 54.88403 * 5 4 3 35 35 H 1.09002 * 109.46961 * 294.89226 * 5 4 3 36 36 H 0.97003 * 120.00292 * 0.02562 * 6 5 4 37 37 H 1.08002 * 124.52549 * 179.97438 * 11 10 9 38 38 H 1.08000 * 122.44311 * 180.25407 * 12 11 10 39 39 H 1.09002 * 109.46779 * 90.00346 * 14 13 9 40 40 H 1.08996 * 109.47123 * 210.00002 * 14 13 9 41 41 H 1.08996 * 109.46837 * 330.00776 * 14 13 9 42 42 H 1.08993 * 109.47380 * 186.04235 * 15 3 2 43 43 H 1.08999 * 109.46759 * 306.04675 * 15 3 2 44 44 H 0.96996 * 119.99507 * 0.02562 * 18 16 15 45 45 H 0.97006 * 120.00139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.8828 1.9918 1.3308 5 6 1.9277 3.5158 1.2036 6 7 1.6696 4.1229 2.5116 7 6 1.6594 5.4644 2.6417 8 8 1.8650 6.1714 1.6727 9 6 1.4017 6.0718 3.9506 10 16 1.0889 5.1912 5.4400 11 6 0.9278 6.6439 6.3201 12 6 1.1075 7.7064 5.5267 13 6 1.3660 7.4132 4.2088 14 6 1.5933 8.4661 3.1549 15 6 3.4102 1.4518 -0.4686 16 6 3.4711 1.0500 -1.9198 17 8 2.4559 0.7390 -2.5062 18 7 4.6537 1.0361 -2.5662 19 6 4.7092 0.6700 -3.8862 20 1 3.8052 0.3932 -4.4083 21 6 5.9285 0.6552 -4.5523 22 7 7.0285 0.9916 -3.9170 23 14 6.0042 0.1557 -6.3508 24 1 4.6383 -0.1749 -6.8306 25 1 6.5521 1.2785 -7.1537 26 1 6.8823 -1.0328 -6.4979 27 1 -0.3634 0.4322 0.9324 28 1 -0.3634 0.5912 -0.8405 29 1 -0.3633 -1.0236 -0.0918 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7004 1.6563 1.9688 33 1 0.9318 1.6918 1.7709 34 1 1.1675 3.8437 0.4944 35 1 2.9118 3.8220 0.8486 36 1 1.5060 3.5594 3.2841 37 1 0.7136 6.6986 7.3773 38 1 1.0502 8.7203 5.8944 39 1 0.6410 8.7326 2.6964 40 1 2.0354 9.3503 3.6141 41 1 2.2676 8.0770 2.3921 42 1 3.7825 2.4702 -0.3578 43 1 4.0257 0.7735 0.1223 44 1 5.4656 1.2844 -2.0972 45 1 7.8798 0.9810 -4.3820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713479566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:21 Heat of formation + Delta-G solvation = -59.680911 kcal Electronic energy + Delta-G solvation = -26311.758512 eV Core-core repulsion = 22455.013639 eV Total energy + Delta-G solvation = -3856.744873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02046 -40.42652 -38.92248 -38.24434 -36.05578 -35.66278 -33.30417 -32.26364 -31.83566 -30.83484 -29.01896 -27.59025 -25.99527 -24.62403 -23.76812 -22.43285 -22.14524 -20.94773 -19.99283 -19.81839 -19.11764 -17.91598 -17.13599 -16.97026 -16.88741 -16.50329 -16.27131 -16.19256 -15.77459 -15.53494 -15.39389 -15.11749 -14.84534 -14.44112 -14.34497 -14.00525 -14.00410 -13.67019 -13.43875 -13.28278 -13.06580 -13.01480 -12.84396 -12.71571 -12.66664 -12.57091 -12.40105 -12.13887 -12.02219 -11.85631 -11.76279 -11.40987 -11.05327 -10.31090 -10.25131 -9.98774 -9.74634 -9.36320 -9.24054 -8.46104 -5.94358 -0.48942 0.51671 0.93377 1.36118 1.39734 1.40966 1.55282 1.92328 2.06471 2.12165 2.29377 2.85831 3.20878 3.37542 3.75581 3.88016 3.98563 4.02961 4.16436 4.25482 4.27965 4.38231 4.40525 4.46226 4.56544 4.59845 4.66719 4.72631 4.76485 4.78799 4.89533 5.00501 5.02161 5.08466 5.21198 5.28209 5.39331 5.41680 5.42951 5.52631 5.89647 6.08949 6.19688 6.39869 6.61355 7.09098 7.13990 7.57596 8.13396 8.71709 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.002114 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.635980 B =13240.734598 C =14359.221952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.533 5.533 4 C 0.053 3.947 5 C 0.130 3.870 6 N -0.712 5.712 7 C 0.584 3.416 8 O -0.567 6.567 9 C -0.313 4.313 10 S 0.237 5.763 11 C -0.213 4.213 12 C -0.162 4.162 13 C -0.029 4.029 14 C -0.107 4.107 15 C 0.055 3.945 16 C 0.442 3.558 17 O -0.611 6.611 18 N -0.577 5.577 19 C -0.329 4.329 20 H 0.079 0.921 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.270 1.270 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.410 0.590 37 H 0.202 0.798 38 H 0.167 0.833 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.825 8.418 27.068 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.258 5.258 4 C -0.075 4.075 5 C 0.006 3.994 6 N -0.364 5.364 7 C 0.373 3.627 8 O -0.448 6.448 9 C -0.433 4.433 10 S 0.505 5.495 11 C -0.351 4.351 12 C -0.192 4.192 13 C -0.045 4.045 14 C -0.165 4.165 15 C -0.076 4.076 16 C 0.229 3.771 17 O -0.496 6.496 18 N -0.215 5.215 19 C -0.458 4.458 20 H 0.097 0.903 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.195 1.195 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.219 0.781 38 H 0.184 0.816 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.228 0.772 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.556 7.371 26.000 29.391 hybrid contribution 1.251 0.875 -0.569 1.629 sum -10.305 8.245 25.431 28.652 Atomic orbital electron populations 1.21642 0.93794 1.01712 1.01823 1.22100 0.97215 0.87456 1.00553 1.61352 1.18835 1.20304 1.25355 1.22255 1.03771 0.92112 0.89394 1.21165 1.01135 0.93153 0.83962 1.45601 1.72722 1.05840 1.12258 1.17304 0.76174 0.82154 0.87114 1.90796 1.51246 1.62183 1.40621 1.24356 1.21925 0.98593 0.98449 1.82718 1.64252 1.07317 0.95168 1.25733 1.06078 0.96705 1.06537 1.20111 1.05686 1.02047 0.91357 1.19821 0.95337 0.92954 0.96373 1.20709 1.02757 0.96357 0.96693 1.21790 0.90849 1.02900 0.92067 1.20747 0.83326 0.82919 0.90097 1.90485 1.35168 1.54187 1.69797 1.41959 1.08282 1.60272 1.10941 1.19678 0.94847 1.43769 0.87548 0.90312 1.26043 0.94133 0.97020 1.04300 1.69682 0.99083 1.48615 1.38948 0.84878 0.78242 0.78200 0.77059 1.19785 1.19785 1.19486 0.91074 0.94230 0.91507 0.92765 0.93078 0.91787 0.87762 0.92352 0.92638 0.75288 0.78106 0.81607 0.90772 0.89450 0.91655 0.88087 0.90975 0.77153 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.96 71.98 0.72 -2.70 16 2 C 0.05 1.63 5.18 86.30 0.45 2.08 16 3 N -0.53 -16.64 4.10 -900.81 -3.69 -20.34 16 4 C 0.05 1.14 4.92 86.31 0.42 1.56 16 5 C 0.13 3.29 5.70 86.38 0.49 3.78 16 6 N -0.71 -14.92 5.55 -467.17 -2.59 -17.51 16 7 C 0.58 15.26 7.78 86.42 0.67 15.93 16 8 O -0.57 -19.61 14.24 -4.35 -0.06 -19.67 16 9 C -0.31 -6.33 6.45 24.08 0.16 -6.18 16 10 S 0.24 2.67 22.16 -56.49 -1.25 1.42 16 11 C -0.21 -1.96 10.92 66.82 0.73 -1.23 16 12 C -0.16 -2.02 9.97 21.08 0.21 -1.81 16 13 C -0.03 -0.54 5.90 -20.42 -0.12 -0.66 16 14 C -0.11 -2.11 9.55 71.24 0.68 -1.43 16 15 C 0.06 1.93 5.28 85.56 0.45 2.38 16 16 C 0.44 21.37 7.29 87.66 0.64 22.01 16 17 O -0.61 -33.94 14.12 -3.08 -0.04 -33.98 16 18 N -0.58 -30.27 5.29 -306.98 -1.62 -31.89 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 22 N -0.92 -50.82 13.05 21.66 0.28 -50.53 16 23 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H 0.07 1.41 6.91 -2.38 -0.02 1.40 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.05 2.12 5.85 -2.39 -0.01 2.11 16 31 H 0.05 1.24 8.00 -2.39 -0.02 1.22 16 32 H 0.06 1.13 8.00 -2.39 -0.02 1.12 16 33 H 0.10 1.79 6.58 -2.39 -0.02 1.77 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.60 6.95 -2.39 -0.02 1.58 16 36 H 0.41 5.77 7.59 -92.71 -0.70 5.07 16 37 H 0.20 0.51 8.06 -2.91 -0.02 0.48 16 38 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.71 6.01 -2.39 -0.01 1.69 16 42 H 0.10 3.32 6.71 -2.39 -0.02 3.30 16 43 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 44 H 0.39 19.78 7.90 -92.71 -0.73 19.05 16 45 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -76.21 384.38 -0.58 -76.79 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.40 Total: 34.64 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.78 Total: 15.13 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -7.63 Total: -120.28 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.11 Total: -53.65 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.25 Total: 1.42 kcal Total: -76.21 -0.58 -76.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713479566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.111 kcal (2) G-P(sol) polarization free energy of solvation -76.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds