Wall clock time and date at job start Tue Mar 31 2020 23:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35962 * 116.99703 * 2 1 4 4 C 1.37562 * 120.82441 * 179.97438 * 3 2 1 5 5 C 1.38039 * 114.24975 * 180.21104 * 4 3 2 6 6 C 1.47116 * 127.76243 * 179.73111 * 5 4 3 7 7 O 1.21631 * 119.99797 * 8.39352 * 6 5 4 8 8 N 1.34781 * 120.00154 * 188.39214 * 6 5 4 9 9 C 1.46922 * 120.63039 * 11.66557 * 8 6 5 10 10 C 1.53629 * 108.54420 * 126.36603 * 9 8 6 11 11 C 1.53046 * 109.23899 * 54.85335 * 10 9 8 12 12 C 1.53036 * 109.54126 * 298.51495 * 11 10 9 13 13 H 1.09008 * 109.52301 * 301.39453 * 12 11 10 14 14 C 1.52998 * 109.49756 * 181.31666 * 12 11 10 15 15 N 1.46497 * 109.46992 * 175.15935 * 14 12 11 16 16 C 1.46502 * 120.00235 * 90.00184 * 15 14 12 17 17 C 1.36942 * 120.00163 * 270.00103 * 15 14 12 18 18 H 1.08000 * 119.99956 * 22.01964 * 17 15 14 19 19 C 1.38811 * 120.00107 * 202.02741 * 17 15 14 20 20 N 1.31618 * 120.00200 * 17.49193 * 19 17 15 21 21 Si 1.86801 * 119.99978 * 197.50126 * 19 17 15 22 22 H 1.48496 * 109.47466 * 59.99072 * 21 19 17 23 23 H 1.48502 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46896 * 299.99239 * 21 19 17 25 25 C 1.46923 * 120.62866 * 191.94233 * 8 6 5 26 26 S 1.77235 * 104.48026 * 359.67983 * 5 4 3 27 27 N 1.30364 * 120.82374 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47447 * 60.00413 * 1 2 3 29 29 H 1.09006 * 109.46464 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47255 * 299.99479 * 1 2 3 31 31 H 1.07998 * 122.87868 * 359.93940 * 4 3 2 32 32 H 1.08996 * 109.58862 * 246.20112 * 9 8 6 33 33 H 1.08999 * 109.58451 * 6.62602 * 9 8 6 34 34 H 1.09000 * 109.63283 * 294.86912 * 10 9 8 35 35 H 1.08997 * 109.45747 * 174.74287 * 10 9 8 36 36 H 1.08998 * 109.45639 * 178.48632 * 11 10 9 37 37 H 1.09006 * 109.44558 * 58.52637 * 11 10 9 38 38 H 1.08994 * 109.47152 * 295.15698 * 14 12 11 39 39 H 1.08997 * 109.47197 * 55.16011 * 14 12 11 40 40 H 1.08995 * 109.47519 * 90.51998 * 16 15 14 41 41 H 1.09004 * 109.46952 * 210.52419 * 16 15 14 42 42 H 1.09001 * 109.47017 * 330.51882 * 16 15 14 43 43 H 0.96999 * 120.00000 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.59042 * 353.37481 * 25 8 6 45 45 H 1.08998 * 109.58641 * 113.66023 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 0.0005 5 6 3.9005 2.5969 0.0051 6 6 5.3048 3.0354 0.0123 7 8 6.1965 2.2221 -0.1389 8 7 5.6031 4.3381 0.1864 9 6 4.5724 5.2905 0.6213 10 6 5.0864 6.0331 1.8641 11 6 6.4393 6.6737 1.5452 12 6 7.4498 5.5826 1.1840 13 1 7.5440 4.8837 2.0152 14 6 8.8103 6.2213 0.8974 15 7 9.8039 5.1702 0.6651 16 6 10.0309 4.6634 -0.6906 17 6 10.5207 4.6614 1.7151 18 1 10.1397 4.7490 2.7219 19 6 11.7372 4.0333 1.4856 20 7 12.3684 4.2180 0.3456 21 14 12.4781 2.9258 2.7947 22 1 11.5452 1.8069 3.0826 23 1 13.7703 2.3795 2.3076 24 1 12.7078 3.7102 4.0346 25 6 6.9639 4.8339 -0.0610 26 16 2.4469 3.6110 -0.0012 27 7 1.3520 2.3148 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0643 0.4375 0.0019 32 1 4.3738 6.0043 -0.1781 33 1 3.6578 4.7515 0.8683 34 1 5.2023 5.3300 2.6890 35 1 4.3736 6.8085 2.1444 36 1 6.7947 7.2240 2.4163 37 1 6.3275 7.3579 0.7041 38 1 8.7358 6.8529 0.0122 39 1 9.1146 6.8267 1.7511 40 1 10.8163 5.2474 -1.1702 41 1 10.3342 3.6175 -0.6414 42 1 9.1108 4.7479 -1.2689 43 1 13.2182 3.7788 0.1851 44 1 7.6277 3.9937 -0.2643 45 1 6.9568 5.5094 -0.9164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713891249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:39 Heat of formation + Delta-G solvation = 9.587744 kcal Electronic energy + Delta-G solvation = -27623.362979 eV Core-core repulsion = 23769.621820 eV Total energy + Delta-G solvation = -3853.741159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52738 -40.07960 -37.79033 -36.58383 -35.58145 -33.23895 -31.86344 -31.47407 -30.05509 -28.40662 -26.75672 -25.86988 -25.56611 -24.15179 -22.67352 -21.79186 -20.71768 -19.78809 -19.30884 -18.52109 -17.89632 -16.63509 -16.55625 -16.34409 -16.09807 -15.35922 -14.98130 -14.92486 -14.83082 -14.15363 -14.00964 -13.76589 -13.53472 -13.45778 -13.11813 -13.01207 -12.59567 -12.48728 -12.34580 -11.82905 -11.69062 -11.50199 -11.36060 -11.13056 -10.95039 -10.90911 -10.67437 -10.60505 -10.47845 -10.24765 -10.04282 -9.97574 -9.93602 -9.83487 -9.77228 -8.64238 -8.59551 -8.42661 -6.69090 -5.68473 -3.10977 -0.09948 0.86901 1.26950 1.99723 2.55085 2.93325 3.07954 3.43882 3.49927 3.52472 4.15418 4.50600 4.56535 4.66139 4.80344 4.83271 4.90447 4.95465 4.99820 5.20096 5.22201 5.30630 5.36256 5.45124 5.50689 5.64272 5.68619 5.82264 5.83984 6.01305 6.02978 6.11641 6.20715 6.32050 6.48271 6.60404 6.73319 6.74963 6.81867 6.95317 7.27438 7.41834 7.72904 7.86738 7.98222 8.45474 9.28756 9.93502 10.41660 11.37765 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.002925 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.282613 B = 9569.272503 C =10617.089483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.297 6.297 3 C 0.307 3.693 4 C -0.128 4.128 5 C -0.177 4.177 6 C 0.587 3.413 7 O -0.501 6.501 8 N -0.602 5.602 9 C 0.102 3.898 10 C -0.129 4.129 11 C -0.114 4.114 12 C -0.123 4.123 13 H 0.076 0.924 14 C 0.159 3.841 15 N -0.600 5.600 16 C 0.159 3.841 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.905 5.905 21 Si 0.900 3.100 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.124 3.876 26 S 0.297 5.703 27 N -0.537 5.537 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.178 0.822 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.023 0.977 41 H 0.047 0.953 42 H 0.000 1.000 43 H 0.252 0.748 44 H 0.109 0.891 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.535 0.891 -1.275 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.203 6.203 3 C 0.094 3.906 4 C -0.165 4.165 5 C -0.309 4.309 6 C 0.372 3.628 7 O -0.376 6.376 8 N -0.336 5.336 9 C -0.024 4.024 10 C -0.168 4.168 11 C -0.152 4.152 12 C -0.145 4.145 13 H 0.094 0.906 14 C 0.031 3.969 15 N -0.322 5.322 16 C 0.014 3.986 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.003 3.997 26 S 0.448 5.552 27 N -0.376 5.376 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.062 0.938 44 H 0.127 0.873 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.260 1.652 -1.469 25.357 hybrid contribution 1.035 -2.039 0.723 2.398 sum -24.226 -0.387 -0.747 24.240 Atomic orbital electron populations 1.22963 0.76765 1.03548 1.02493 1.86312 1.22954 1.22851 1.88175 1.19867 0.89692 0.85294 0.95782 1.20804 0.92495 0.98721 1.04486 1.26147 0.99405 0.97576 1.07776 1.16733 0.85152 0.82766 0.78161 1.90913 1.46570 1.51780 1.48378 1.48069 1.12493 1.06531 1.66492 1.22199 0.89533 0.92472 0.98226 1.21959 0.98217 0.99817 0.96758 1.21569 0.93927 0.98081 1.01673 1.22304 0.97183 0.97297 0.97764 0.90564 1.20698 0.87154 0.90328 0.98761 1.43882 1.42470 1.40871 1.04972 1.20839 0.94349 0.99144 0.84220 1.19076 0.99110 1.32145 0.88061 0.91623 1.24934 0.95939 1.01492 0.97159 1.70079 1.15540 1.44618 1.24701 0.86413 0.78182 0.81259 0.81178 1.21060 1.21704 1.21032 1.21997 0.79913 1.00253 0.97499 1.85108 0.89304 1.11104 1.69673 1.76354 1.28860 1.02268 1.30145 0.92180 0.88041 0.92156 0.80435 0.90128 0.90963 0.91246 0.90593 0.91374 0.91916 0.94523 0.93007 0.95920 0.93457 0.98161 0.93752 0.87322 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.43 101.05 1.05 1.33 16 2 O -0.30 -3.20 10.51 -19.62 -0.21 -3.41 16 3 C 0.31 3.63 7.36 -18.42 -0.14 3.50 16 4 C -0.13 -1.57 10.11 -39.90 -0.40 -1.98 16 5 C -0.18 -2.26 6.41 -36.05 -0.23 -2.49 16 6 C 0.59 9.16 7.63 -12.66 -0.10 9.07 16 7 O -0.50 -9.90 16.42 5.25 0.09 -9.81 16 8 N -0.60 -8.42 2.97 -173.89 -0.52 -8.93 16 9 C 0.10 1.03 5.63 -3.49 -0.02 1.01 16 10 C -0.13 -1.27 6.10 -26.38 -0.16 -1.43 16 11 C -0.11 -1.34 5.16 -26.69 -0.14 -1.48 16 12 C -0.12 -1.98 2.55 -90.50 -0.23 -2.22 16 13 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 14 C 0.16 3.05 5.16 -4.04 -0.02 3.03 16 15 N -0.60 -14.76 2.76 -181.12 -0.50 -15.26 16 16 C 0.16 3.90 8.11 59.85 0.49 4.39 16 17 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 18 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 19 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 20 N -0.90 -26.77 10.95 55.49 0.61 -26.16 16 21 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.12 1.99 4.45 -3.71 -0.02 1.97 16 26 S 0.30 3.04 19.64 -107.50 -2.11 0.93 16 27 N -0.54 -6.26 11.03 29.19 0.32 -5.94 16 28 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.18 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.68 3.34 -20.21 -0.07 0.61 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 40 H 0.02 0.60 7.62 -51.93 -0.40 0.20 16 41 H 0.05 1.28 7.09 -51.93 -0.37 0.91 16 42 H 0.00 0.00 6.07 -51.93 -0.32 -0.32 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.11 2.18 5.29 -51.93 -0.27 1.91 16 45 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -32.78 370.01 -8.37 -41.15 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.45 Total: -3.02 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.14 Total: 7.57 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.09 Total: -56.30 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.12 Total: -13.22 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.11 Total: 0.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.78 -8.37 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713891249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.735 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds