Wall clock time and date at job start Tue Mar 31 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35964 * 117.00075 * 2 1 4 4 C 1.37564 * 120.82441 * 180.02562 * 3 2 1 5 5 C 1.38044 * 114.24786 * 179.97438 * 4 3 2 6 6 C 1.47121 * 127.75787 * 179.97438 * 5 4 3 7 7 O 1.21629 * 119.99777 * 351.99929 * 6 5 4 8 8 N 1.34778 * 119.99599 * 172.00232 * 6 5 4 9 9 C 1.46924 * 120.63282 * 348.46879 * 8 6 5 10 10 C 1.53191 * 108.77282 * 233.60879 * 9 8 6 11 11 C 1.53038 * 109.31597 * 305.36485 * 10 9 8 12 12 C 1.53037 * 109.53748 * 61.36504 * 11 10 9 13 13 H 1.09002 * 109.50115 * 58.62086 * 12 11 10 14 14 C 1.53003 * 109.49921 * 178.68393 * 12 11 10 15 15 N 1.46497 * 109.47131 * 184.93834 * 14 12 11 16 16 C 1.46509 * 119.99974 * 269.99970 * 15 14 12 17 17 C 1.36938 * 120.00384 * 90.00081 * 15 14 12 18 18 H 1.07996 * 119.99333 * 334.64502 * 17 15 14 19 19 C 1.38810 * 119.99933 * 154.92521 * 17 15 14 20 20 N 1.31616 * 120.00052 * 342.60569 * 19 17 15 21 21 Si 1.86805 * 119.99771 * 162.61221 * 19 17 15 22 22 H 1.48503 * 109.46943 * 89.99919 * 21 19 17 23 23 H 1.48495 * 109.46942 * 209.99291 * 21 19 17 24 24 H 1.48501 * 109.47280 * 329.99910 * 21 19 17 25 25 C 1.46939 * 120.59930 * 168.49117 * 8 6 5 26 26 S 1.77229 * 104.48147 * 0.23684 * 5 4 3 27 27 N 1.30360 * 120.82389 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.46792 * 300.00091 * 1 2 3 29 29 H 1.08999 * 109.47155 * 59.99642 * 1 2 3 30 30 H 1.08991 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.07992 * 122.88061 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.58556 * 113.82413 * 9 8 6 33 33 H 1.08999 * 109.70620 * 353.46797 * 9 8 6 34 34 H 1.09008 * 109.49727 * 185.41148 * 10 9 8 35 35 H 1.09000 * 109.49995 * 65.32296 * 10 9 8 36 36 H 1.09002 * 109.46069 * 301.34639 * 11 10 9 37 37 H 1.09001 * 109.44729 * 181.38085 * 11 10 9 38 38 H 1.08997 * 109.46936 * 64.93755 * 14 12 11 39 39 H 1.08994 * 109.46980 * 304.93548 * 14 12 11 40 40 H 1.09001 * 109.47089 * 264.46811 * 16 15 14 41 41 H 1.08995 * 109.46648 * 24.46931 * 16 15 14 42 42 H 1.08997 * 109.46859 * 144.46840 * 16 15 14 43 43 H 0.97007 * 119.99595 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.61386 * 6.61862 * 25 8 6 45 45 H 1.09000 * 109.55884 * 246.18750 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 -0.0005 5 6 3.9006 2.5968 -0.0010 6 6 5.3050 3.0352 -0.0011 7 8 6.1963 2.2207 0.1459 8 7 5.6038 4.3393 -0.1640 9 6 4.5735 5.2957 -0.5911 10 6 5.0818 6.0501 -1.8237 11 6 6.4366 6.6864 -1.5048 12 6 7.4475 5.5911 -1.1581 13 1 7.5373 4.9002 -1.9964 14 6 8.8099 6.2257 -0.8714 15 7 9.8039 5.1715 -0.6554 16 6 10.0373 4.6498 0.6936 17 6 10.5151 4.6735 -1.7145 18 1 10.1045 4.7240 -2.7120 19 6 11.7611 4.0987 -1.5049 20 7 12.4108 4.3269 -0.3833 21 14 12.5158 3.0016 -2.8150 22 1 13.3286 3.8272 -3.7440 23 1 13.3834 1.9842 -2.1689 24 1 11.4354 2.3213 -3.5735 25 6 6.9666 4.8307 0.0818 26 16 2.4472 3.6110 0.0064 27 7 1.3521 2.3148 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0643 0.4374 -0.0014 32 1 4.3753 6.0030 0.2142 33 1 3.6572 4.7613 -0.8418 34 1 4.3684 6.8290 -2.0933 35 1 5.1932 5.3547 -2.6556 36 1 6.3294 7.3631 -0.6570 37 1 6.7888 7.2443 -2.3725 38 1 8.7403 6.8478 0.0209 39 1 9.1104 6.8400 -1.7201 40 1 10.8843 5.1688 1.1424 41 1 9.1483 4.8099 1.3037 42 1 10.2527 3.5828 0.6383 43 1 13.2818 3.9254 -0.2370 44 1 7.6304 3.9878 0.2740 45 1 6.9635 5.4998 0.9423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713891250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:41 Heat of formation + Delta-G solvation = -14.817072 kcal Electronic energy + Delta-G solvation = -27613.178198 eV Core-core repulsion = 23758.378767 eV Total energy + Delta-G solvation = -3854.799431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55255 -41.06295 -39.04396 -37.51018 -37.23171 -34.66920 -33.24588 -32.61367 -31.59996 -29.17541 -28.29763 -27.46533 -26.95469 -25.19461 -24.03321 -22.80743 -22.23632 -21.04410 -20.29850 -19.52160 -18.76332 -18.62466 -17.46410 -17.30002 -17.22625 -16.86384 -16.49672 -15.95780 -15.77565 -15.56845 -15.25806 -15.19917 -14.81580 -14.50441 -14.41208 -14.17056 -13.95404 -13.92486 -13.20778 -13.12632 -13.01518 -12.76685 -12.64067 -12.59260 -12.40098 -12.20383 -12.10899 -12.03935 -11.94788 -11.83262 -11.61316 -11.50817 -11.30434 -11.13249 -10.92004 -10.58398 -9.75938 -9.41283 -8.69717 -7.81450 -5.30571 -1.07872 -0.03994 0.40162 1.04473 1.41981 1.45539 1.53775 1.54427 1.81189 2.20791 2.50845 3.17646 3.29897 3.60596 3.70181 3.77906 3.96365 4.03820 4.06385 4.13580 4.29839 4.34714 4.35091 4.40101 4.50790 4.56510 4.70255 4.78095 4.80511 4.83019 4.90756 4.91514 5.00231 5.08469 5.14447 5.21375 5.34854 5.42949 5.45298 5.61332 5.66289 5.69343 5.94853 6.14808 6.36307 6.81358 7.16923 7.91128 8.34459 9.19987 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.002906 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.914105 B = 9633.996314 C =10668.105384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.309 6.309 3 C 0.303 3.697 4 C -0.132 4.132 5 C -0.199 4.199 6 C 0.583 3.417 7 O -0.559 6.559 8 N -0.598 5.598 9 C 0.097 3.903 10 C -0.125 4.125 11 C -0.107 4.107 12 C -0.110 4.110 13 H 0.039 0.961 14 C 0.155 3.845 15 N -0.615 5.615 16 C 0.174 3.826 17 C -0.258 4.258 18 H 0.063 0.937 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.958 3.042 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.278 1.278 25 C 0.128 3.872 26 S 0.366 5.634 27 N -0.547 5.547 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.173 0.827 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.007 0.993 41 H 0.038 0.962 42 H -0.001 1.001 43 H 0.247 0.753 44 H 0.062 0.938 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.914 2.605 0.991 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.215 6.215 3 C 0.090 3.910 4 C -0.171 4.171 5 C -0.330 4.330 6 C 0.370 3.630 7 O -0.439 6.439 8 N -0.330 5.330 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.145 4.145 12 C -0.132 4.132 13 H 0.057 0.943 14 C 0.029 3.971 15 N -0.338 5.338 16 C 0.029 3.971 17 C -0.388 4.388 18 H 0.081 0.919 19 C -0.247 4.247 20 N -0.580 5.580 21 Si 0.786 3.214 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.203 1.203 25 C 0.007 3.993 26 S 0.518 5.482 27 N -0.387 5.387 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.190 0.810 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.723 3.424 1.157 28.950 hybrid contribution 1.935 -2.571 -0.583 3.270 sum -26.788 0.853 0.574 26.807 Atomic orbital electron populations 1.23223 0.74996 1.05450 1.02569 1.86306 1.24736 1.22468 1.88000 1.19752 0.89410 0.85729 0.96075 1.20861 0.93011 0.98730 1.04460 1.25833 0.99077 0.98825 1.09281 1.17100 0.85853 0.82816 0.77244 1.90878 1.48534 1.53314 1.51136 1.48123 1.12448 1.06567 1.65879 1.22467 0.88484 0.92117 0.99726 1.21903 0.98002 1.00378 0.96034 1.21534 0.93352 0.96663 1.02998 1.22028 0.96882 0.97829 0.96487 0.94252 1.20947 0.87107 0.89397 0.99637 1.44084 1.43447 1.42021 1.04274 1.20561 0.95787 0.95528 0.85207 1.19350 0.97012 1.33259 0.89205 0.91893 1.25714 0.96700 1.03070 0.99248 1.70208 1.13684 1.46571 1.27545 0.85422 0.78001 0.78917 0.79032 1.20547 1.22104 1.20314 1.21745 0.80505 0.98822 0.98273 1.84727 0.86416 1.09085 1.67932 1.76271 1.29629 1.02811 1.30025 0.92048 0.92030 0.85349 0.80979 0.86795 0.90176 0.86423 0.92816 0.89393 0.90739 0.92375 0.93253 0.97506 0.94333 0.98256 0.94367 0.91944 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.43 113.37 1.18 1.60 16 2 O -0.31 -6.33 10.51 -93.15 -0.98 -7.31 16 3 C 0.30 6.83 7.36 84.75 0.62 7.45 16 4 C -0.13 -3.25 10.11 22.06 0.22 -3.03 16 5 C -0.20 -4.91 6.41 24.56 0.16 -4.76 16 6 C 0.58 18.35 7.63 86.57 0.66 19.02 16 7 O -0.56 -23.32 16.42 -4.12 -0.07 -23.39 16 8 N -0.60 -15.93 2.97 -823.11 -2.45 -18.38 16 9 C 0.10 1.58 5.61 86.36 0.48 2.06 16 10 C -0.12 -1.95 6.08 30.67 0.19 -1.76 16 11 C -0.11 -2.13 5.17 30.62 0.16 -1.97 16 12 C -0.11 -3.44 2.54 -10.72 -0.03 -3.47 16 13 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 14 C 0.16 5.86 5.14 86.38 0.44 6.30 16 15 N -0.62 -30.94 2.75 -726.94 -2.00 -32.94 16 16 C 0.17 8.82 7.99 127.77 1.02 9.84 16 17 C -0.26 -14.56 9.60 84.03 0.81 -13.75 16 18 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 19 C -0.05 -3.03 5.01 84.86 0.43 -2.60 16 20 N -0.93 -57.18 11.09 21.65 0.24 -56.94 16 21 Si 0.96 47.19 29.59 68.60 2.03 49.22 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 C 0.13 4.02 4.46 86.36 0.39 4.40 16 26 S 0.37 6.41 19.63 -56.49 -1.11 5.30 16 27 N -0.55 -11.55 11.03 -175.21 -1.93 -13.48 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.77 16 30 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.19 3.32 -22.64 -0.08 1.11 16 34 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 39 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 40 H 0.01 0.37 7.27 -2.39 -0.02 0.35 16 41 H 0.04 1.63 6.29 -2.39 -0.02 1.61 16 42 H 0.00 -0.08 7.61 -2.39 -0.02 -0.10 16 43 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.06 2.59 5.37 -2.39 -0.01 2.57 16 45 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -75.88 370.44 1.40 -74.48 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.93 Total: 4.09 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 6.73 Total: 19.34 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -6.14 Total: -121.73 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.05 Total: -30.70 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.11 Total: 5.30 kcal Total: -75.88 1.40 -74.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713891250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.668 kcal (2) G-P(sol) polarization free energy of solvation -75.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds