Wall clock time and date at job start Tue Mar 31 2020 23:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00180 * 2 1 4 4 H 1.07999 * 120.00516 * 210.73532 * 3 2 1 5 5 C 1.38823 * 119.99922 * 30.73514 * 3 2 1 6 6 N 1.31617 * 119.99546 * 7.22260 * 5 3 2 7 7 Si 1.86788 * 119.99960 * 187.22427 * 5 3 2 8 8 H 1.48494 * 109.47510 * 90.00103 * 7 5 3 9 9 H 1.48509 * 109.47166 * 210.00143 * 7 5 3 10 10 H 1.48505 * 109.47295 * 329.99570 * 7 5 3 11 11 C 1.46494 * 119.99745 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46922 * 89.99722 * 11 2 1 13 13 N 1.46505 * 109.46822 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00353 * 269.99944 * 13 12 11 15 15 C 1.34781 * 119.99657 * 90.00595 * 13 12 11 16 16 O 1.21628 * 120.00245 * 3.19722 * 15 13 12 17 17 C 1.47268 * 119.99857 * 183.20461 * 15 13 12 18 18 C 1.35209 * 123.14235 * 172.51232 * 17 15 13 19 19 S 1.70940 * 108.82524 * 180.02562 * 18 17 15 20 20 C 1.70762 * 91.13158 * 0.02562 * 19 18 17 21 21 C 1.50704 * 124.71930 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.32756 * 197.28803 * 21 20 19 23 23 C 1.54472 * 110.37131 * 75.04038 * 21 20 19 24 24 C 1.54506 * 104.06330 * 217.18736 * 23 21 20 25 25 C 1.54476 * 104.06498 * 0.02562 * 24 23 21 26 26 O 1.44426 * 110.36988 * 319.65787 * 21 20 19 27 27 N 1.28649 * 110.56060 * 359.97438 * 20 19 18 28 28 H 1.09003 * 109.46891 * 265.38112 * 1 2 3 29 29 H 1.09002 * 109.47152 * 25.37574 * 1 2 3 30 30 H 1.09000 * 109.47197 * 145.37730 * 1 2 3 31 31 H 0.97004 * 119.99852 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47320 * 330.00051 * 11 2 1 33 33 H 1.08999 * 109.47103 * 209.99621 * 11 2 1 34 34 H 1.08995 * 109.46964 * 60.00489 * 12 11 2 35 35 H 1.08991 * 109.47365 * 300.00089 * 12 11 2 36 36 H 1.08995 * 109.47525 * 264.02317 * 14 13 12 37 37 H 1.09004 * 109.46683 * 24.02114 * 14 13 12 38 38 H 1.09002 * 109.47365 * 144.01742 * 14 13 12 39 39 H 1.07996 * 125.58260 * 0.05709 * 18 17 15 40 40 H 1.09001 * 110.51633 * 335.83736 * 23 21 20 41 41 H 1.09008 * 110.51255 * 98.40774 * 23 21 20 42 42 H 1.09008 * 110.51020 * 118.64558 * 24 23 21 43 43 H 1.09002 * 110.51646 * 241.22115 * 24 23 21 44 44 H 1.08997 * 110.37974 * 142.80223 * 25 24 23 45 45 H 1.08997 * 110.37084 * 265.03920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1160 1.2516 -0.4780 5 6 1.6019 2.3037 0.6144 6 7 0.4951 2.1918 1.3178 7 14 2.4355 3.9664 0.4429 8 1 1.9000 4.6678 -0.7514 9 1 2.1698 4.7809 1.6559 10 1 3.8997 3.7725 0.2880 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1854 -2.9782 -1.4439 14 6 4.6503 -2.9778 -1.4441 15 6 2.5118 -4.1457 -1.4443 16 8 1.2970 -4.1469 -1.5029 17 6 3.2469 -5.4199 -1.3735 18 6 2.6376 -6.6174 -1.2222 19 16 3.8296 -7.8420 -1.1851 20 6 5.0719 -6.6855 -1.3729 21 6 6.5426 -7.0084 -1.4371 22 1 7.1353 -6.1123 -1.2532 23 6 6.9000 -7.6168 -2.8112 24 6 7.9593 -8.6922 -2.4816 25 6 8.1161 -8.6067 -0.9472 26 8 6.8735 -8.0382 -0.4801 27 7 4.5778 -5.5004 -1.4518 28 1 -0.3633 -0.0828 1.0244 29 1 -0.3633 0.9285 -0.4404 30 1 -0.3633 -0.8457 -0.5839 31 1 0.1120 2.9729 1.7469 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5133 34 1 3.0415 -0.9500 -1.9568 35 1 1.5000 -1.8398 -1.9572 36 1 5.0136 -3.0843 -2.4662 37 1 5.0134 -2.0391 -1.0255 38 1 5.0141 -3.8095 -0.8407 39 1 1.5723 -6.7744 -1.1390 40 1 6.0214 -8.0733 -3.2671 41 1 7.3181 -6.8550 -3.4693 42 1 7.6043 -9.6804 -2.7744 43 1 8.9027 -8.4639 -2.9776 44 1 8.2614 -9.6009 -0.5245 45 1 8.9527 -7.9584 -0.6868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715520161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:05 Heat of formation + Delta-G solvation = 8.098646 kcal Electronic energy + Delta-G solvation = -26943.196992 eV Core-core repulsion = 23089.391261 eV Total energy + Delta-G solvation = -3853.805731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81299 -39.85232 -38.50395 -36.03119 -34.77483 -32.75457 -31.97360 -31.39844 -29.06523 -28.76134 -26.43559 -25.90126 -25.55393 -24.14226 -22.80083 -22.00498 -20.98947 -20.36361 -19.53412 -18.24339 -17.00977 -16.67342 -16.62174 -16.24811 -15.79800 -15.58692 -15.55797 -14.81257 -14.44798 -14.24961 -14.15554 -13.64240 -13.50139 -13.28385 -12.95734 -12.77094 -12.49478 -12.37557 -12.32395 -12.15389 -11.98313 -11.89364 -11.79642 -11.25139 -11.19775 -10.86584 -10.81944 -10.46328 -10.44620 -10.16961 -9.99815 -9.90802 -9.85220 -9.71291 -9.59292 -9.11773 -8.56854 -8.27846 -6.56248 -5.70175 -3.22743 0.28905 0.98130 1.42382 1.81249 3.01982 3.34342 3.39940 3.42433 3.45957 3.47503 3.84112 4.03480 4.32376 4.38238 4.53184 4.58369 4.71523 4.79406 4.95186 5.08731 5.16189 5.19884 5.29649 5.42221 5.46893 5.47166 5.48007 5.53704 5.78818 5.83222 5.85331 6.17722 6.21630 6.28930 6.38306 6.65304 6.77100 6.98156 7.05186 7.19103 7.45019 7.67497 7.77744 7.84326 8.36058 8.50602 9.29281 9.90280 10.45051 11.35969 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002313 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.682582 B =12100.578249 C =13004.840606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.064 0.936 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.092 3.908 13 N -0.590 5.590 14 C 0.076 3.924 15 C 0.584 3.416 16 O -0.535 6.535 17 C 0.019 3.981 18 C -0.230 4.230 19 S 0.242 5.758 20 C 0.012 3.988 21 C 0.154 3.846 22 H 0.104 0.896 23 C -0.146 4.146 24 C -0.155 4.155 25 C 0.045 3.955 26 O -0.366 6.366 27 N -0.424 5.424 28 H 0.019 0.981 29 H 0.051 0.949 30 H -0.002 1.002 31 H 0.253 0.747 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.191 0.809 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.884 -26.157 -8.277 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.082 0.918 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.014 3.986 12 C -0.032 4.032 13 N -0.322 5.322 14 C -0.067 4.067 15 C 0.368 3.632 16 O -0.412 6.412 17 C -0.116 4.116 18 C -0.372 4.372 19 S 0.499 5.501 20 C -0.266 4.266 21 C 0.093 3.907 22 H 0.122 0.878 23 C -0.185 4.185 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.284 6.284 27 N -0.142 5.142 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.208 0.792 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.346 -26.654 -7.961 31.770 hybrid contribution 0.063 1.998 -0.239 2.013 sum 15.409 -24.656 -8.200 30.210 Atomic orbital electron populations 1.20767 0.82702 0.97116 0.97711 1.43764 1.01797 1.00363 1.86117 1.19137 1.03025 0.87319 1.29477 0.91791 1.25240 0.97938 0.99080 0.97010 1.70040 1.21165 1.28725 1.34874 0.86249 0.79110 0.84024 0.77072 1.21414 1.21669 1.20412 1.20989 0.96301 0.88802 0.92477 1.22577 0.96761 0.81854 1.02038 1.47793 1.07711 1.05974 1.70689 1.22226 0.78812 1.03522 1.02149 1.17094 0.86269 0.82122 0.77693 1.90820 1.12680 1.86680 1.51052 1.20527 0.88030 0.95520 1.07530 1.26749 1.07274 0.96311 1.06840 1.82851 0.94453 1.10365 1.62450 1.26783 1.00842 0.92432 1.06555 1.21215 0.87235 0.93206 0.89003 0.87835 1.23027 1.00063 0.98895 0.96492 1.22965 0.99776 0.99964 0.96570 1.23464 0.86801 0.99522 0.93382 1.89182 1.40373 1.51208 1.47644 1.67241 1.10458 1.21894 1.14597 0.96267 0.93021 0.98397 0.93669 0.94497 0.93531 0.90593 0.90435 0.93124 0.91564 0.88410 0.79178 0.90235 0.89227 0.90225 0.89923 0.88434 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.30 9.00 59.85 0.54 4.84 16 2 N -0.60 -16.01 2.90 -181.11 -0.53 -16.54 16 3 C -0.26 -7.34 9.58 -15.06 -0.14 -7.49 16 4 H 0.06 1.75 7.84 -52.49 -0.41 1.33 16 5 C 0.01 0.18 5.14 -17.43 -0.09 0.09 16 6 N -0.90 -27.25 10.96 55.49 0.61 -26.64 16 7 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 3.26 6.01 -4.04 -0.02 3.24 16 12 C 0.09 1.83 5.73 -4.04 -0.02 1.80 16 13 N -0.59 -10.24 2.87 -182.91 -0.53 -10.76 16 14 C 0.08 1.06 9.47 59.84 0.57 1.63 16 15 C 0.58 10.44 7.65 -12.59 -0.10 10.34 16 16 O -0.53 -11.17 16.29 5.25 0.09 -11.08 16 17 C 0.02 0.27 6.49 -84.52 -0.55 -0.27 16 18 C -0.23 -2.75 10.62 29.65 0.31 -2.43 16 19 S 0.24 2.18 22.69 -107.50 -2.44 -0.26 16 20 C 0.01 0.12 6.26 -13.61 -0.09 0.04 16 21 C 0.15 1.21 3.82 -27.11 -0.10 1.10 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.15 -0.80 6.62 -25.17 -0.17 -0.96 16 24 C -0.15 -0.59 7.09 -25.17 -0.18 -0.77 16 25 C 0.04 0.21 7.63 37.93 0.29 0.50 16 26 O -0.37 -3.00 11.12 -35.23 -0.39 -3.40 16 27 N -0.42 -5.35 6.76 -8.51 -0.06 -5.40 16 28 H 0.02 0.54 7.76 -51.93 -0.40 0.14 16 29 H 0.05 1.44 7.07 -51.93 -0.37 1.08 16 30 H 0.00 -0.06 8.11 -51.93 -0.42 -0.48 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 35 H 0.08 1.67 7.38 -51.93 -0.38 1.29 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 38 H 0.10 1.32 5.26 -51.93 -0.27 1.05 16 39 H 0.19 2.11 8.04 -52.49 -0.42 1.69 16 40 H 0.08 0.45 7.86 -51.93 -0.41 0.05 16 41 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -34.26 382.42 -9.11 -43.37 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.86 Total: -3.86 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 0.25 Total: 11.67 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.50 Total: -59.34 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.31 Total: -14.48 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.44 Total: -0.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.26 -9.11 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715520161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.471 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds