Wall clock time and date at job start Tue Mar 31 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00180 * 2 1 4 4 H 1.07999 * 120.00516 * 210.73532 * 3 2 1 5 5 C 1.38823 * 119.99922 * 30.73514 * 3 2 1 6 6 N 1.31617 * 119.99546 * 7.22260 * 5 3 2 7 7 Si 1.86788 * 119.99960 * 187.22427 * 5 3 2 8 8 H 1.48494 * 109.47510 * 90.00103 * 7 5 3 9 9 H 1.48509 * 109.47166 * 210.00143 * 7 5 3 10 10 H 1.48505 * 109.47295 * 329.99570 * 7 5 3 11 11 C 1.46494 * 119.99745 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46922 * 89.99722 * 11 2 1 13 13 N 1.46505 * 109.46822 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00353 * 269.99944 * 13 12 11 15 15 C 1.34781 * 119.99657 * 90.00595 * 13 12 11 16 16 O 1.21628 * 120.00245 * 3.19722 * 15 13 12 17 17 C 1.47268 * 119.99857 * 183.20461 * 15 13 12 18 18 C 1.35209 * 123.14235 * 172.51232 * 17 15 13 19 19 S 1.70940 * 108.82524 * 180.02562 * 18 17 15 20 20 C 1.70762 * 91.13158 * 0.02562 * 19 18 17 21 21 C 1.50704 * 124.71930 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.32756 * 197.28803 * 21 20 19 23 23 C 1.54472 * 110.37131 * 75.04038 * 21 20 19 24 24 C 1.54506 * 104.06330 * 217.18736 * 23 21 20 25 25 C 1.54476 * 104.06498 * 0.02562 * 24 23 21 26 26 O 1.44426 * 110.36988 * 319.65787 * 21 20 19 27 27 N 1.28649 * 110.56060 * 359.97438 * 20 19 18 28 28 H 1.09003 * 109.46891 * 265.38112 * 1 2 3 29 29 H 1.09002 * 109.47152 * 25.37574 * 1 2 3 30 30 H 1.09000 * 109.47197 * 145.37730 * 1 2 3 31 31 H 0.97004 * 119.99852 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47320 * 330.00051 * 11 2 1 33 33 H 1.08999 * 109.47103 * 209.99621 * 11 2 1 34 34 H 1.08995 * 109.46964 * 60.00489 * 12 11 2 35 35 H 1.08991 * 109.47365 * 300.00089 * 12 11 2 36 36 H 1.08995 * 109.47525 * 264.02317 * 14 13 12 37 37 H 1.09004 * 109.46683 * 24.02114 * 14 13 12 38 38 H 1.09002 * 109.47365 * 144.01742 * 14 13 12 39 39 H 1.07996 * 125.58260 * 0.05709 * 18 17 15 40 40 H 1.09001 * 110.51633 * 335.83736 * 23 21 20 41 41 H 1.09008 * 110.51255 * 98.40774 * 23 21 20 42 42 H 1.09008 * 110.51020 * 118.64558 * 24 23 21 43 43 H 1.09002 * 110.51646 * 241.22115 * 24 23 21 44 44 H 1.08997 * 110.37974 * 142.80223 * 25 24 23 45 45 H 1.08997 * 110.37084 * 265.03920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1160 1.2516 -0.4780 5 6 1.6019 2.3037 0.6144 6 7 0.4951 2.1918 1.3178 7 14 2.4355 3.9664 0.4429 8 1 1.9000 4.6678 -0.7514 9 1 2.1698 4.7809 1.6559 10 1 3.8997 3.7725 0.2880 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1854 -2.9782 -1.4439 14 6 4.6503 -2.9778 -1.4441 15 6 2.5118 -4.1457 -1.4443 16 8 1.2970 -4.1469 -1.5029 17 6 3.2469 -5.4199 -1.3735 18 6 2.6376 -6.6174 -1.2222 19 16 3.8296 -7.8420 -1.1851 20 6 5.0719 -6.6855 -1.3729 21 6 6.5426 -7.0084 -1.4371 22 1 7.1353 -6.1123 -1.2532 23 6 6.9000 -7.6168 -2.8112 24 6 7.9593 -8.6922 -2.4816 25 6 8.1161 -8.6067 -0.9472 26 8 6.8735 -8.0382 -0.4801 27 7 4.5778 -5.5004 -1.4518 28 1 -0.3633 -0.0828 1.0244 29 1 -0.3633 0.9285 -0.4404 30 1 -0.3633 -0.8457 -0.5839 31 1 0.1120 2.9729 1.7469 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5133 34 1 3.0415 -0.9500 -1.9568 35 1 1.5000 -1.8398 -1.9572 36 1 5.0136 -3.0843 -2.4662 37 1 5.0134 -2.0391 -1.0255 38 1 5.0141 -3.8095 -0.8407 39 1 1.5723 -6.7744 -1.1390 40 1 6.0214 -8.0733 -3.2671 41 1 7.3181 -6.8550 -3.4693 42 1 7.6043 -9.6804 -2.7744 43 1 8.9027 -8.4639 -2.9776 44 1 8.2614 -9.6009 -0.5245 45 1 8.9527 -7.9584 -0.6868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715520161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:04 Heat of formation + Delta-G solvation = -13.868940 kcal Electronic energy + Delta-G solvation = -26944.149578 eV Core-core repulsion = 23089.391261 eV Total energy + Delta-G solvation = -3854.758317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84830 -40.53799 -39.60571 -37.84849 -36.45933 -33.55800 -33.24314 -32.58162 -30.50329 -29.74905 -27.99614 -27.60214 -26.91209 -25.28785 -23.93380 -22.69910 -22.27548 -21.61653 -20.57912 -19.40224 -18.73207 -17.80992 -17.40825 -17.21103 -17.15237 -16.74915 -16.54349 -16.18283 -15.64621 -15.51720 -15.29526 -14.97098 -14.66056 -14.55632 -14.27183 -14.03387 -14.01206 -13.87096 -13.37824 -13.07494 -12.92481 -12.81026 -12.76030 -12.70227 -12.68288 -12.46164 -12.22839 -12.21688 -11.96052 -11.65895 -11.60560 -11.29530 -10.94638 -10.70936 -10.69741 -10.56032 -10.02407 -9.75287 -8.69709 -7.87600 -5.44917 -0.60720 0.16646 0.55439 0.76715 1.46801 1.48711 1.57875 1.94053 2.18540 2.41997 2.51029 3.21643 3.28637 3.49216 3.64675 3.73162 3.93768 3.98428 4.05701 4.13023 4.20654 4.36081 4.38101 4.40573 4.43427 4.55349 4.60998 4.76326 4.78072 4.82926 4.88358 4.90231 5.00450 5.04538 5.07981 5.16534 5.19056 5.26983 5.52264 5.55229 5.62530 5.75404 6.20575 6.33079 6.38595 7.00183 7.10898 7.77192 8.29490 9.18023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002313 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.682582 B =12100.578249 C =13004.840606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.615 5.615 3 C -0.270 4.270 4 H 0.074 0.926 5 C -0.051 4.051 6 N -0.940 5.940 7 Si 0.978 3.022 8 H -0.283 1.283 9 H -0.294 1.294 10 H -0.263 1.263 11 C 0.150 3.850 12 C 0.112 3.888 13 N -0.593 5.593 14 C 0.079 3.921 15 C 0.579 3.421 16 O -0.577 6.577 17 C -0.007 4.007 18 C -0.240 4.240 19 S 0.320 5.680 20 C 0.004 3.996 21 C 0.152 3.848 22 H 0.106 0.894 23 C -0.144 4.144 24 C -0.148 4.148 25 C 0.038 3.962 26 O -0.388 6.388 27 N -0.439 5.439 28 H -0.004 1.004 29 H 0.032 0.968 30 H 0.015 0.985 31 H 0.251 0.749 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.193 0.807 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.768 -27.756 -9.240 34.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.338 5.338 3 C -0.400 4.400 4 H 0.092 0.908 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.805 3.195 8 H -0.210 1.210 9 H -0.221 1.221 10 H -0.187 1.187 11 C 0.022 3.978 12 C -0.014 4.014 13 N -0.324 5.324 14 C -0.063 4.063 15 C 0.365 3.635 16 O -0.457 6.457 17 C -0.142 4.142 18 C -0.383 4.383 19 S 0.579 5.421 20 C -0.274 4.274 21 C 0.091 3.909 22 H 0.124 0.876 23 C -0.183 4.183 24 C -0.186 4.186 25 C -0.038 4.038 26 O -0.307 6.307 27 N -0.156 5.156 28 H 0.014 0.986 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.210 0.790 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.298 -28.302 -8.944 34.869 hybrid contribution -0.774 2.286 0.082 2.415 sum 17.525 -26.016 -8.862 32.595 Atomic orbital electron populations 1.20494 0.83203 0.96695 0.96321 1.43993 1.01884 1.01474 1.86495 1.19520 1.03352 0.87963 1.29160 0.90786 1.26121 0.98677 1.02981 0.96868 1.70218 1.22740 1.29546 1.36031 0.85118 0.78761 0.78971 0.76653 1.20995 1.22075 1.18730 1.20999 0.95536 0.86911 0.94313 1.22049 0.96516 0.83410 0.99376 1.47837 1.08990 1.05001 1.70555 1.22367 0.76545 1.04021 1.03352 1.17604 0.86064 0.83288 0.76543 1.90780 1.14528 1.87484 1.52937 1.20095 0.89051 0.94420 1.10669 1.26986 1.08491 0.97034 1.05752 1.82598 0.91803 1.07629 1.60116 1.27291 1.02509 0.92368 1.05216 1.21350 0.85540 0.93659 0.90381 0.87639 1.23053 1.00594 0.99545 0.95156 1.22962 1.00006 0.99739 0.95848 1.23696 0.85750 1.00190 0.94155 1.89150 1.41932 1.51355 1.48250 1.67147 1.09435 1.23281 1.15748 0.98600 0.94951 0.96664 0.94042 0.95850 0.93273 0.89791 0.92400 0.91589 0.91209 0.87696 0.78974 0.90479 0.88353 0.89474 0.88299 0.87178 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.79 9.00 127.77 1.15 10.93 16 2 N -0.61 -33.52 2.90 -726.91 -2.11 -35.63 16 3 C -0.27 -15.29 9.58 84.04 0.81 -14.48 16 4 H 0.07 3.97 7.84 -2.91 -0.02 3.94 16 5 C -0.05 -2.94 5.14 84.86 0.44 -2.50 16 6 N -0.94 -57.78 10.96 21.65 0.24 -57.54 16 7 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 9 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 C 0.15 6.95 6.01 86.38 0.52 7.47 16 12 C 0.11 4.48 5.73 86.38 0.49 4.97 16 13 N -0.59 -20.62 2.87 -850.84 -2.44 -23.06 16 14 C 0.08 2.12 9.47 127.77 1.21 3.33 16 15 C 0.58 21.05 7.65 86.62 0.66 21.72 16 16 O -0.58 -24.96 16.29 -4.12 -0.07 -25.03 16 17 C -0.01 -0.21 6.49 40.56 0.26 0.06 16 18 C -0.24 -5.58 10.62 67.12 0.71 -4.86 16 19 S 0.32 5.09 22.69 -56.49 -1.28 3.81 16 20 C 0.00 0.08 6.26 88.58 0.55 0.64 16 21 C 0.15 2.04 3.82 30.35 0.12 2.15 16 22 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.14 -1.19 6.62 31.61 0.21 -0.98 16 24 C -0.15 -0.65 7.09 31.61 0.22 -0.43 16 25 C 0.04 0.26 7.63 72.48 0.55 0.81 16 26 O -0.39 -5.47 11.12 -148.98 -1.66 -7.13 16 27 N -0.44 -10.56 6.76 -180.83 -1.22 -11.78 16 28 H 0.00 -0.26 7.76 -2.39 -0.02 -0.27 16 29 H 0.03 1.85 7.07 -2.39 -0.02 1.84 16 30 H 0.01 0.76 8.11 -2.39 -0.02 0.74 16 31 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 34 H 0.08 3.22 8.07 -2.39 -0.02 3.20 16 35 H 0.06 2.56 7.38 -2.39 -0.02 2.54 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.81 8.03 -2.39 -0.02 1.79 16 38 H 0.11 2.73 5.26 -2.39 -0.01 2.72 16 39 H 0.19 4.26 8.04 -2.91 -0.02 4.23 16 40 H 0.08 0.67 7.86 -2.39 -0.02 0.66 16 41 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 43 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -74.94 382.42 2.38 -72.56 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.99 Total: 7.39 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 7.91 Total: 28.83 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -5.54 Total: -128.02 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.72 Total: -32.16 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.28 Total: 3.81 kcal Total: -74.94 2.38 -72.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715520161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.693 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds