Wall clock time and date at job start Tue Mar 31 2020 22:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47274 * 2 1 4 4 C 1.46494 * 119.99892 * 269.99739 * 3 2 1 5 5 C 1.53002 * 109.47035 * 269.99929 * 4 3 2 6 6 N 1.46503 * 109.47038 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00048 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00069 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00145 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47233 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47238 * 119.99914 * 11 9 7 14 14 H 1.48498 * 109.47073 * 239.99646 * 11 9 7 15 15 C 1.34781 * 119.99873 * 89.99441 * 3 2 1 16 16 O 1.21286 * 119.99837 * 180.02562 * 15 3 2 17 17 C 1.50699 * 120.00303 * 0.02562 * 15 3 2 18 18 C 1.53000 * 109.47188 * 179.97438 * 17 15 3 19 19 N 1.46503 * 109.46978 * 179.97438 * 18 17 15 20 20 C 1.34770 * 119.99738 * 180.02562 * 19 18 17 21 21 O 1.21634 * 120.00291 * 359.97438 * 20 19 18 22 22 C 1.47191 * 119.99817 * 180.02562 * 20 19 18 23 23 C 1.44425 * 123.46449 * 180.02562 * 22 20 19 24 24 C 1.32766 * 113.08895 * 179.97438 * 23 22 20 25 25 S 1.75505 * 110.57315 * 359.74176 * 24 23 22 26 26 C 1.36014 * 123.46276 * 0.02562 * 22 20 19 27 27 H 1.08995 * 109.47541 * 300.00135 * 1 2 3 28 28 H 1.09001 * 109.46848 * 60.00242 * 1 2 3 29 29 H 1.09003 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47439 * 239.99337 * 2 1 3 31 31 H 1.09001 * 109.46848 * 119.99758 * 2 1 3 32 32 H 1.08995 * 109.47383 * 29.99993 * 4 3 2 33 33 H 1.09004 * 109.47123 * 149.99829 * 4 3 2 34 34 H 1.09004 * 109.47034 * 299.99625 * 5 4 3 35 35 H 1.08993 * 109.47101 * 60.00465 * 5 4 3 36 36 H 0.97005 * 119.99977 * 0.02562 * 6 5 4 37 37 H 0.96998 * 119.99842 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47293 * 59.99474 * 17 15 3 39 39 H 1.09001 * 109.46582 * 300.00088 * 17 15 3 40 40 H 1.09005 * 109.47116 * 59.99933 * 18 17 15 41 41 H 1.08998 * 109.47094 * 299.99680 * 18 17 15 42 42 H 0.97004 * 119.99641 * 0.02562 * 19 18 17 43 43 H 1.08006 * 123.45781 * 0.02562 * 23 22 20 44 44 H 1.08001 * 124.71648 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.58647 * 359.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7103 6 7 3.9520 2.5223 -2.9787 7 6 5.1841 2.4494 -3.5719 8 1 5.9758 1.8828 -3.1044 9 6 5.4158 3.1047 -4.7735 10 7 4.4512 3.7956 -5.3430 11 14 7.0968 3.0058 -5.5821 12 1 7.9999 2.1742 -4.7467 13 1 6.9632 2.3931 -6.9283 14 1 7.6637 4.3719 -5.7142 15 6 2.2429 2.0166 1.1673 16 8 2.6468 3.1602 1.1672 17 6 1.9921 1.3061 2.4724 18 6 2.3240 2.2433 3.6353 19 7 2.0796 1.5527 4.9040 20 6 2.3041 2.1882 6.0711 21 8 2.7099 3.3348 6.0711 22 6 2.0591 1.4942 7.3458 23 6 2.2735 2.1028 8.6379 24 6 1.9868 1.2919 9.6494 25 16 1.4302 -0.2627 9.0548 26 6 1.6075 0.2138 7.4280 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6877 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 4.3884 2.2155 -0.9506 35 1 3.8745 0.7621 -1.8406 36 1 3.2410 3.0316 -3.3985 37 1 4.6133 4.2538 -6.1824 38 1 2.6226 0.4188 2.5300 39 1 0.9443 1.0115 2.5301 40 1 1.6938 3.1309 3.5778 41 1 3.3719 2.5374 3.5772 42 1 1.7563 0.6382 4.9040 43 1 2.6297 3.1141 8.7681 44 1 2.0793 1.5539 10.6930 45 1 1.3859 -0.4139 6.5775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715738818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:01 Heat of formation + Delta-G solvation = -28.005024 kcal Electronic energy + Delta-G solvation = -25867.883440 eV Core-core repulsion = 22012.512136 eV Total energy + Delta-G solvation = -3855.371304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35958 -39.81833 -37.25940 -36.35038 -35.41529 -34.59632 -32.12594 -31.38805 -30.34913 -29.90157 -27.65254 -25.70081 -24.34245 -23.69539 -22.94227 -21.68886 -21.39609 -19.79525 -18.86851 -18.49550 -17.48499 -17.29659 -17.02465 -16.34672 -15.83239 -15.61232 -15.16579 -14.86866 -14.62897 -14.09418 -14.01189 -13.78600 -13.58668 -13.53561 -13.41886 -13.28733 -13.01183 -12.93900 -12.87853 -12.59275 -12.25608 -11.93211 -11.76435 -11.60351 -11.29573 -11.22179 -10.97919 -10.87741 -10.67360 -10.26553 -10.06646 -9.81049 -9.66350 -9.57503 -9.39457 -8.90624 -8.86454 -8.56865 -6.91806 -5.74883 -3.04053 0.28074 1.04400 1.41707 1.59659 2.63753 2.66592 3.04820 3.15597 3.45248 3.50932 3.53246 4.21605 4.35751 4.51606 4.61790 4.62794 4.70692 4.75871 4.76647 4.90045 5.02490 5.10523 5.22549 5.33135 5.50582 5.53965 5.58119 5.60278 5.64037 5.65706 5.76043 5.81267 5.83268 5.99135 6.04157 6.07645 6.14340 6.54650 6.73870 6.90911 7.12958 7.45927 7.72219 7.90563 8.23083 8.43619 9.54619 10.10793 10.45730 11.48079 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.001734 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.722208 B =16144.520593 C =16889.213246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.606 5.606 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.515 3.485 16 O -0.527 6.527 17 C -0.152 4.152 18 C 0.134 3.866 19 N -0.727 5.727 20 C 0.575 3.425 21 O -0.528 6.528 22 C -0.151 4.151 23 C -0.085 4.085 24 C -0.235 4.235 25 S 0.185 5.815 26 C -0.215 4.215 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.017 0.983 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.397 0.603 43 H 0.156 0.844 44 H 0.171 0.829 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 -14.793 29.716 35.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.340 5.340 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.301 3.699 16 O -0.403 6.403 17 C -0.193 4.193 18 C 0.010 3.990 19 N -0.379 5.379 20 C 0.360 3.640 21 O -0.405 6.405 22 C -0.169 4.169 23 C -0.114 4.114 24 C -0.370 4.370 25 S 0.450 5.550 26 C -0.353 4.353 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.231 0.769 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.606 -14.697 30.374 36.021 hybrid contribution 0.939 0.799 -1.539 1.972 sum -11.668 -13.898 28.835 34.070 Atomic orbital electron populations 1.22226 0.95900 1.02200 1.02688 1.21600 0.94316 0.82653 1.03568 1.47933 1.65577 1.14214 1.06276 1.21708 0.98142 0.98466 0.83152 1.20903 0.92756 0.95444 0.89436 1.42216 1.12927 1.60727 1.21641 1.19253 0.89309 1.26011 1.02318 0.91147 1.24753 0.97868 1.00326 0.98085 1.69670 1.31526 1.37366 1.19595 0.86089 0.83588 0.77255 0.79097 1.20568 1.21853 1.21798 1.20221 0.77902 0.86768 0.84999 1.90790 1.44642 1.17697 1.87132 1.21862 1.04203 1.00230 0.92972 1.21103 1.03421 0.94728 0.79721 1.45819 1.68779 1.17444 1.05834 1.17572 0.77691 0.85860 0.82856 1.90845 1.44986 1.17249 1.87404 1.20353 1.07829 0.94096 0.94653 1.21186 0.99688 1.01261 0.89288 1.25547 1.09975 0.97758 1.03727 1.83116 1.62045 1.14445 0.95380 1.25680 1.06128 0.99706 1.03767 0.92642 0.91888 0.91485 0.89666 0.90563 0.90502 0.89653 0.95941 0.96509 0.78267 0.93539 0.88247 0.88347 0.90172 0.90044 0.76889 0.82696 0.81192 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.10 0.90 5.93 -4.04 -0.02 0.87 16 3 N -0.61 -7.97 2.47 -173.69 -0.43 -8.40 16 4 C 0.11 1.82 5.52 -4.04 -0.02 1.80 16 5 C 0.14 3.03 6.58 -4.04 -0.03 3.00 16 6 N -0.73 -19.22 5.60 -59.91 -0.34 -19.56 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 11 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.51 7.14 7.67 -10.98 -0.08 7.06 16 16 O -0.53 -9.97 15.56 5.55 0.09 -9.88 16 17 C -0.15 -1.31 4.37 -27.88 -0.12 -1.43 16 18 C 0.13 1.45 4.96 -4.04 -0.02 1.43 16 19 N -0.73 -6.15 5.52 -61.46 -0.34 -6.49 16 20 C 0.58 6.45 7.79 -12.63 -0.10 6.35 16 21 O -0.53 -8.29 16.80 5.25 0.09 -8.20 16 22 C -0.15 -1.29 5.98 -104.63 -0.63 -1.91 16 23 C -0.09 -0.68 10.10 -39.02 -0.39 -1.08 16 24 C -0.24 -1.33 11.12 28.86 0.32 -1.01 16 25 S 0.18 0.83 23.02 -107.50 -2.48 -1.64 16 26 C -0.21 -1.19 10.38 29.93 0.31 -0.87 16 27 H 0.05 0.38 7.22 -51.93 -0.38 0.00 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.08 0.47 6.44 -51.93 -0.33 0.14 16 32 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 33 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 37 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.10 0.63 7.40 -51.93 -0.38 0.25 16 39 H 0.10 0.59 7.19 -51.93 -0.37 0.21 16 40 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.40 1.87 6.97 -40.82 -0.28 1.59 16 43 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 44 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.17 0.45 7.01 -52.49 -0.37 0.08 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -37.99 393.54 -9.01 -46.99 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.58 Total: 5.62 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.65 Total: 5.77 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.38 Total: -62.51 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.48 Total: -1.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.99 -9.01 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715738818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.989 kcal (2) G-P(sol) polarization free energy of solvation -37.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds