Wall clock time and date at job start Tue Mar 31 2020 22:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47274 * 2 1 4 4 C 1.46494 * 119.99892 * 269.99739 * 3 2 1 5 5 C 1.53002 * 109.47035 * 269.99929 * 4 3 2 6 6 N 1.46503 * 109.47038 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00048 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00069 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00145 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47233 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47238 * 119.99914 * 11 9 7 14 14 H 1.48498 * 109.47073 * 239.99646 * 11 9 7 15 15 C 1.34781 * 119.99873 * 89.99441 * 3 2 1 16 16 O 1.21286 * 119.99837 * 180.02562 * 15 3 2 17 17 C 1.50699 * 120.00303 * 0.02562 * 15 3 2 18 18 C 1.53000 * 109.47188 * 179.97438 * 17 15 3 19 19 N 1.46503 * 109.46978 * 179.97438 * 18 17 15 20 20 C 1.34770 * 119.99738 * 180.02562 * 19 18 17 21 21 O 1.21634 * 120.00291 * 359.97438 * 20 19 18 22 22 C 1.47191 * 119.99817 * 180.02562 * 20 19 18 23 23 C 1.44425 * 123.46449 * 180.02562 * 22 20 19 24 24 C 1.32766 * 113.08895 * 179.97438 * 23 22 20 25 25 S 1.75505 * 110.57315 * 359.74176 * 24 23 22 26 26 C 1.36014 * 123.46276 * 0.02562 * 22 20 19 27 27 H 1.08995 * 109.47541 * 300.00135 * 1 2 3 28 28 H 1.09001 * 109.46848 * 60.00242 * 1 2 3 29 29 H 1.09003 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47439 * 239.99337 * 2 1 3 31 31 H 1.09001 * 109.46848 * 119.99758 * 2 1 3 32 32 H 1.08995 * 109.47383 * 29.99993 * 4 3 2 33 33 H 1.09004 * 109.47123 * 149.99829 * 4 3 2 34 34 H 1.09004 * 109.47034 * 299.99625 * 5 4 3 35 35 H 1.08993 * 109.47101 * 60.00465 * 5 4 3 36 36 H 0.97005 * 119.99977 * 0.02562 * 6 5 4 37 37 H 0.96998 * 119.99842 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47293 * 59.99474 * 17 15 3 39 39 H 1.09001 * 109.46582 * 300.00088 * 17 15 3 40 40 H 1.09005 * 109.47116 * 59.99933 * 18 17 15 41 41 H 1.08998 * 109.47094 * 299.99680 * 18 17 15 42 42 H 0.97004 * 119.99641 * 0.02562 * 19 18 17 43 43 H 1.08006 * 123.45781 * 0.02562 * 23 22 20 44 44 H 1.08001 * 124.71648 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.58647 * 359.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7103 6 7 3.9520 2.5223 -2.9787 7 6 5.1841 2.4494 -3.5719 8 1 5.9758 1.8828 -3.1044 9 6 5.4158 3.1047 -4.7735 10 7 4.4512 3.7956 -5.3430 11 14 7.0968 3.0058 -5.5821 12 1 7.9999 2.1742 -4.7467 13 1 6.9632 2.3931 -6.9283 14 1 7.6637 4.3719 -5.7142 15 6 2.2429 2.0166 1.1673 16 8 2.6468 3.1602 1.1672 17 6 1.9921 1.3061 2.4724 18 6 2.3240 2.2433 3.6353 19 7 2.0796 1.5527 4.9040 20 6 2.3041 2.1882 6.0711 21 8 2.7099 3.3348 6.0711 22 6 2.0591 1.4942 7.3458 23 6 2.2735 2.1028 8.6379 24 6 1.9868 1.2919 9.6494 25 16 1.4302 -0.2627 9.0548 26 6 1.6075 0.2138 7.4280 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6877 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 4.3884 2.2155 -0.9506 35 1 3.8745 0.7621 -1.8406 36 1 3.2410 3.0316 -3.3985 37 1 4.6133 4.2538 -6.1824 38 1 2.6226 0.4188 2.5300 39 1 0.9443 1.0115 2.5301 40 1 1.6938 3.1309 3.5778 41 1 3.3719 2.5374 3.5772 42 1 1.7563 0.6382 4.9040 43 1 2.6297 3.1141 8.7681 44 1 2.0793 1.5539 10.6930 45 1 1.3859 -0.4139 6.5775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715738818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:00 Heat of formation + Delta-G solvation = -56.420310 kcal Electronic energy + Delta-G solvation = -25869.115619 eV Core-core repulsion = 22012.512136 eV Total energy + Delta-G solvation = -3856.603483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31377 -40.77634 -37.87389 -37.59243 -36.41999 -36.30387 -33.73213 -32.44775 -31.51418 -30.54417 -29.14017 -26.57561 -25.70239 -24.69348 -24.07583 -22.99376 -22.38270 -20.57938 -19.83648 -19.17342 -19.03280 -18.30854 -17.94347 -17.42264 -16.93011 -16.59617 -16.44384 -16.13515 -15.55602 -15.43516 -15.20014 -15.14166 -14.76332 -14.65256 -14.41230 -14.19430 -13.93717 -13.75155 -13.54823 -13.35389 -13.14956 -12.98030 -12.94972 -12.81842 -12.60132 -12.56848 -12.25631 -12.10976 -12.10202 -11.90299 -11.86290 -11.14667 -11.01465 -10.86717 -10.31243 -9.98350 -9.73483 -9.33517 -9.08724 -8.00140 -5.30951 -0.20442 0.64680 0.96415 0.98472 1.44261 1.46733 1.56352 1.59006 1.74221 2.25098 2.30509 2.54369 3.33225 3.48396 3.71538 3.86843 3.98046 3.98141 4.03632 4.11531 4.18815 4.21242 4.31522 4.43709 4.47126 4.48324 4.55225 4.62493 4.79974 4.83281 4.88031 4.92455 5.00523 5.08128 5.10414 5.14984 5.25422 5.29368 5.41852 5.43942 5.56937 6.21526 6.39976 6.48815 7.13810 7.18101 7.27516 7.99558 8.24435 9.23404 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.001734 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.722208 B =16144.520593 C =16889.213246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.603 5.603 4 C 0.122 3.878 5 C 0.149 3.851 6 N -0.744 5.744 7 C -0.251 4.251 8 H 0.074 0.926 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.978 3.022 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.294 1.294 15 C 0.505 3.495 16 O -0.591 6.591 17 C -0.132 4.132 18 C 0.140 3.860 19 N -0.705 5.705 20 C 0.570 3.430 21 O -0.590 6.590 22 C -0.186 4.186 23 C -0.116 4.116 24 C -0.236 4.236 25 S 0.249 5.751 26 C -0.201 4.201 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.055 0.945 34 H -0.002 1.002 35 H 0.033 0.967 36 H 0.375 0.625 37 H 0.253 0.747 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.420 0.580 43 H 0.136 0.864 44 H 0.191 0.809 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 -19.254 31.298 39.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.335 5.335 4 C -0.002 4.002 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.221 1.221 15 C 0.294 3.706 16 O -0.471 6.471 17 C -0.172 4.172 18 C 0.015 3.985 19 N -0.358 5.358 20 C 0.357 3.643 21 O -0.471 6.471 22 C -0.205 4.205 23 C -0.145 4.145 24 C -0.371 4.371 25 S 0.515 5.485 26 C -0.339 4.339 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.016 0.984 35 H 0.051 0.949 36 H 0.207 0.793 37 H 0.062 0.938 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.258 0.742 43 H 0.154 0.846 44 H 0.208 0.792 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.677 -19.278 31.990 39.775 hybrid contribution 1.204 2.076 -1.914 3.069 sum -12.473 -17.202 30.076 36.825 Atomic orbital electron populations 1.22196 0.94396 1.03766 1.02179 1.22003 0.95522 0.79856 1.05386 1.48039 1.65058 1.15856 1.04552 1.21279 0.95732 0.97526 0.85628 1.20961 0.94932 0.95261 0.86686 1.42416 1.12064 1.61121 1.23110 1.19638 0.90349 1.25672 1.02580 0.90835 1.25641 1.01784 1.00357 0.98888 1.69824 1.33606 1.38410 1.19943 0.85007 0.79141 0.77051 0.78128 1.19102 1.21267 1.22092 1.21202 0.76442 0.86241 0.86691 1.90773 1.47476 1.20750 1.88068 1.21817 1.07432 0.99690 0.88215 1.20811 1.00860 0.95034 0.81779 1.45531 1.67833 1.18161 1.04259 1.18115 0.76554 0.85304 0.84302 1.90808 1.48015 1.20022 1.88285 1.20137 1.11478 0.95597 0.93248 1.21186 1.01714 1.01340 0.90277 1.25849 1.08603 0.98389 1.04287 1.82978 1.59746 1.12202 0.93589 1.26109 1.03259 0.98503 1.06047 0.91740 0.93920 0.88789 0.89944 0.86717 0.88891 0.92652 0.98431 0.94924 0.79313 0.93793 0.84473 0.84218 0.92984 0.93410 0.74169 0.84596 0.79232 0.77960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 71.98 0.74 -1.06 16 2 C 0.09 1.30 5.93 86.38 0.51 1.82 16 3 N -0.60 -15.13 2.47 -821.83 -2.03 -17.16 16 4 C 0.12 4.22 5.52 86.38 0.48 4.70 16 5 C 0.15 6.42 6.58 86.38 0.57 6.99 16 6 N -0.74 -40.14 5.60 -343.45 -1.92 -42.07 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 10 N -0.97 -60.83 13.06 21.65 0.28 -60.54 16 11 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 14 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 15 C 0.51 13.82 7.67 87.66 0.67 14.50 16 16 O -0.59 -23.70 15.56 -3.05 -0.05 -23.75 16 17 C -0.13 -1.91 4.37 29.85 0.13 -1.77 16 18 C 0.14 3.05 4.96 86.38 0.43 3.48 16 19 N -0.70 -11.09 5.52 -466.59 -2.58 -13.66 16 20 C 0.57 13.18 7.79 86.60 0.67 13.85 16 21 O -0.59 -20.28 16.80 -4.14 -0.07 -20.35 16 22 C -0.19 -3.07 5.98 -19.87 -0.12 -3.19 16 23 C -0.12 -1.92 10.10 22.67 0.23 -1.69 16 24 C -0.24 -2.29 11.12 66.64 0.74 -1.55 16 25 S 0.25 1.35 23.02 -56.49 -1.30 0.05 16 26 C -0.20 -1.56 10.38 67.30 0.70 -0.86 16 27 H 0.06 0.59 7.22 -2.39 -0.02 0.58 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 1.25 8.07 -2.39 -0.02 1.23 16 31 H 0.11 0.76 6.44 -2.39 -0.02 0.75 16 32 H 0.09 2.89 8.07 -2.39 -0.02 2.87 16 33 H 0.05 2.25 7.42 -2.38 -0.02 2.23 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.37 21.22 7.67 -92.70 -0.71 20.51 16 37 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.14 1.04 7.40 -2.39 -0.02 1.02 16 39 H 0.14 0.95 7.19 -2.39 -0.02 0.94 16 40 H 0.05 1.44 8.10 -2.38 -0.02 1.42 16 41 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 42 H 0.42 2.40 6.97 -92.71 -0.65 1.75 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 45 H 0.20 0.00 7.01 -2.91 -0.02 -0.02 16 Total: -1.00 -90.54 393.54 1.08 -89.46 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.34 Total: 21.16 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.06 Total: 17.38 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -6.25 Total: -133.44 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.12 Total: -44.11 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.30 Total: 0.05 kcal Total: -90.54 1.08 -89.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715738818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.044 kcal (2) G-P(sol) polarization free energy of solvation -90.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds