Wall clock time and date at job start Tue Mar 31 2020 23:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 119.99726 * 2 1 4 4 H 1.07997 * 119.99797 * 200.36145 * 3 2 1 5 5 C 1.38807 * 119.99882 * 20.36325 * 3 2 1 6 6 N 1.31619 * 120.00126 * 14.98949 * 5 3 2 7 7 Si 1.86802 * 119.99918 * 194.98756 * 5 3 2 8 8 H 1.48494 * 109.47273 * 85.00032 * 7 5 3 9 9 H 1.48507 * 109.47183 * 205.00666 * 7 5 3 10 10 H 1.48498 * 109.46971 * 325.00086 * 7 5 3 11 11 C 1.46497 * 120.00260 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47366 * 269.99783 * 11 2 1 13 13 C 1.52997 * 109.47359 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.47235 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99561 * 269.99945 * 14 13 12 16 16 C 1.34766 * 120.00155 * 89.99883 * 14 13 12 17 17 O 1.21279 * 120.00510 * 0.02562 * 16 14 13 18 18 C 1.50703 * 119.99706 * 179.97438 * 16 14 13 19 19 N 1.46505 * 109.47084 * 179.97438 * 18 16 14 20 20 C 1.34772 * 119.99881 * 180.02562 * 19 18 16 21 21 O 1.21625 * 120.00265 * 359.97438 * 20 19 18 22 22 C 1.47200 * 119.99778 * 180.02562 * 20 19 18 23 23 C 1.44424 * 123.46101 * 179.97438 * 22 20 19 24 24 C 1.32762 * 113.08531 * 180.02562 * 23 22 20 25 25 S 1.75513 * 110.57450 * 359.76749 * 24 23 22 26 26 C 1.36008 * 123.46157 * 0.02562 * 22 20 19 27 27 H 1.09005 * 109.47212 * 275.09159 * 1 2 3 28 28 H 1.08998 * 109.47367 * 35.09372 * 1 2 3 29 29 H 1.09000 * 109.47103 * 155.09722 * 1 2 3 30 30 H 0.96999 * 119.99781 * 179.97438 * 6 5 3 31 31 H 1.09006 * 109.47134 * 149.99814 * 11 2 1 32 32 H 1.09003 * 109.46855 * 30.00469 * 11 2 1 33 33 H 1.09006 * 109.46969 * 59.99930 * 12 11 2 34 34 H 1.09003 * 109.47693 * 300.00172 * 12 11 2 35 35 H 1.08998 * 109.47146 * 59.99736 * 13 12 11 36 36 H 1.09004 * 109.47215 * 300.00270 * 13 12 11 37 37 H 1.09004 * 109.47140 * 269.99871 * 15 14 13 38 38 H 1.09000 * 109.47479 * 29.99870 * 15 14 13 39 39 H 1.08989 * 109.47221 * 150.00142 * 15 14 13 40 40 H 1.09003 * 109.47176 * 60.00322 * 18 16 14 41 41 H 1.08997 * 109.47536 * 299.99998 * 18 16 14 42 42 H 0.96996 * 119.99884 * 0.02562 * 19 18 16 43 43 H 1.07997 * 123.45545 * 0.02562 * 23 22 20 44 44 H 1.08003 * 124.71506 * 179.97438 * 24 23 22 45 45 H 1.08005 * 124.58833 * 359.95561 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1790 1.2152 -0.3254 5 6 1.5206 2.3505 0.4183 6 7 0.3875 2.2835 1.0846 7 14 2.2822 4.0127 0.0357 8 1 1.8681 4.4461 -1.3229 9 1 1.8221 5.0100 1.0352 10 1 3.7622 3.9035 0.0907 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 6 3.2171 -3.0350 1.4438 14 7 3.4608 -3.4576 2.8252 15 6 4.6817 -3.0349 3.5159 16 6 2.5619 -4.2351 3.4606 17 8 1.5514 -4.5854 2.8887 18 6 2.8130 -4.6702 4.8814 19 7 1.6975 -5.5007 5.3422 20 6 1.7046 -6.0057 6.5917 21 8 2.6373 -5.7725 7.3366 22 6 0.5840 -6.8406 7.0544 23 6 0.5150 -7.4195 8.3757 24 6 -0.5855 -8.1353 8.5736 25 16 -1.5950 -8.1240 7.1379 26 6 -0.4922 -7.1468 6.2813 27 1 -0.3634 0.0912 1.0237 28 1 -0.3634 0.8408 -0.5908 29 1 -0.3633 -0.9321 -0.4327 30 1 -0.0519 3.0973 1.3772 31 1 3.1499 -1.1385 -0.5134 32 1 1.6084 -2.0285 -0.5130 33 1 1.5001 -1.8398 1.9571 34 1 3.0417 -0.9498 1.9568 35 1 4.1694 -2.9053 0.9297 36 1 2.6276 -3.7947 0.9304 37 1 5.4687 -3.7695 3.3450 38 1 4.9996 -2.0657 3.1315 39 1 4.4852 -2.9550 4.5849 40 1 2.8995 -3.7915 5.5206 41 1 3.7377 -5.2454 4.9273 42 1 0.9538 -5.6870 4.7480 43 1 1.2800 -7.2840 9.1259 44 1 -0.8277 -8.6501 9.4916 45 1 -0.6313 -6.8122 5.2639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717215028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:56 Heat of formation + Delta-G solvation = -33.349969 kcal Electronic energy + Delta-G solvation = -26255.226776 eV Core-core repulsion = 22399.623698 eV Total energy + Delta-G solvation = -3855.603078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50993 -40.54142 -38.02065 -37.78282 -36.83061 -35.68547 -34.09924 -32.23633 -31.17179 -29.08496 -28.11622 -27.84484 -26.58589 -25.63071 -23.81066 -22.38515 -21.95860 -20.91087 -20.06450 -19.14601 -18.76963 -18.38587 -17.67885 -17.33183 -17.18963 -16.81896 -16.28220 -16.05295 -15.80664 -15.53933 -15.23530 -14.84171 -14.61374 -14.31856 -14.29179 -14.11410 -13.92148 -13.87153 -13.49813 -13.39016 -13.26983 -13.22638 -13.01265 -12.73856 -12.54221 -12.47535 -12.28023 -12.12060 -12.02931 -11.87772 -11.40737 -11.16394 -11.07932 -10.64662 -10.41341 -10.02672 -9.77221 -9.39568 -8.81807 -7.82991 -5.29263 -0.26429 0.59380 0.94468 0.96220 1.39321 1.45939 1.48348 1.56084 1.65540 2.23841 2.26867 2.51468 3.29018 3.32022 3.68970 3.79957 3.88069 4.07417 4.15532 4.23068 4.29124 4.31450 4.37283 4.43744 4.55061 4.58989 4.70834 4.78534 4.81676 4.83314 4.90082 4.92392 5.08240 5.12803 5.24593 5.26572 5.27300 5.40203 5.53775 5.63829 5.68369 6.24845 6.31799 6.32433 6.93899 7.01449 7.13657 7.86988 8.31414 9.21394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.001994 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.653217 B =14042.033959 C =14642.782856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.621 5.621 3 C -0.257 4.257 4 H 0.078 0.922 5 C -0.061 4.061 6 N -0.943 5.943 7 Si 0.970 3.030 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.151 3.849 12 C -0.131 4.131 13 C 0.126 3.874 14 N -0.607 5.607 15 C 0.065 3.935 16 C 0.504 3.496 17 O -0.574 6.574 18 C 0.107 3.893 19 N -0.712 5.712 20 C 0.580 3.420 21 O -0.573 6.573 22 C -0.184 4.184 23 C -0.108 4.108 24 C -0.231 4.231 25 S 0.241 5.759 26 C -0.214 4.214 27 H -0.003 1.003 28 H 0.017 0.983 29 H 0.027 0.973 30 H 0.246 0.754 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.044 0.956 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.413 0.587 43 H 0.151 0.849 44 H 0.198 0.802 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -23.846 11.969 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.344 5.344 3 C -0.387 4.387 4 H 0.096 0.904 5 C -0.256 4.256 6 N -0.590 5.590 7 Si 0.799 3.201 8 H -0.213 1.213 9 H -0.225 1.225 10 H -0.189 1.189 11 C 0.025 3.975 12 C -0.173 4.173 13 C 0.003 3.997 14 N -0.338 5.338 15 C -0.077 4.077 16 C 0.292 3.708 17 O -0.454 6.454 18 C -0.020 4.020 19 N -0.366 5.366 20 C 0.367 3.633 21 O -0.454 6.454 22 C -0.202 4.202 23 C -0.136 4.136 24 C -0.366 4.366 25 S 0.507 5.493 26 C -0.353 4.353 27 H 0.015 0.985 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.251 0.749 43 H 0.168 0.832 44 H 0.215 0.785 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.614 -24.374 11.853 27.151 hybrid contribution 1.092 2.096 0.021 2.363 sum 2.706 -22.278 11.874 25.389 Atomic orbital electron populations 1.20502 0.83200 0.95773 0.97249 1.44284 1.02058 1.02149 1.85947 1.19595 0.97305 0.85970 1.35861 0.90420 1.25814 0.98711 1.01954 0.99100 1.70280 1.20511 1.27064 1.41190 0.85226 0.78481 0.79511 0.76905 1.21300 1.22538 1.18927 1.20938 0.96203 0.86490 0.93880 1.22319 0.98492 0.96423 1.00048 1.21499 1.01522 0.95105 0.81580 1.47940 1.21918 1.49146 1.14827 1.22177 0.85338 1.02080 0.98088 1.20775 0.82929 0.78404 0.88711 1.90670 1.28399 1.57914 1.68406 1.21170 0.91936 0.97317 0.91543 1.45602 1.24532 1.51809 1.14685 1.17882 0.85780 0.78875 0.80751 1.90757 1.37543 1.61571 1.55523 1.20234 0.96950 1.06441 0.96624 1.21171 0.99451 0.97847 0.95135 1.25906 0.98762 1.07248 1.04647 1.83004 1.19725 1.44053 1.02494 1.26034 0.99185 1.04317 1.05760 0.98497 0.96372 0.95431 0.94482 0.92038 0.92894 0.96028 0.93750 0.87502 0.90654 0.89386 0.90125 0.89784 0.87706 0.86304 0.74851 0.83185 0.78499 0.80200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.30 9.02 127.77 1.15 10.45 16 2 N -0.62 -31.85 2.93 -726.95 -2.13 -33.98 16 3 C -0.26 -14.13 9.68 84.03 0.81 -13.32 16 4 H 0.08 4.04 7.86 -2.91 -0.02 4.02 16 5 C -0.06 -3.49 5.06 84.86 0.43 -3.06 16 6 N -0.94 -57.42 10.67 21.65 0.23 -57.18 16 7 Si 0.97 45.35 29.58 68.60 2.03 47.38 16 8 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 9 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 C 0.15 6.00 5.71 86.38 0.49 6.49 16 12 C -0.13 -4.84 5.86 30.59 0.18 -4.66 16 13 C 0.13 3.35 5.41 86.38 0.47 3.82 16 14 N -0.61 -14.41 2.87 -846.77 -2.43 -16.84 16 15 C 0.06 1.02 10.24 127.77 1.31 2.33 16 16 C 0.50 13.28 7.74 87.66 0.68 13.95 16 17 O -0.57 -19.04 15.25 -3.03 -0.05 -19.09 16 18 C 0.11 2.31 4.71 85.63 0.40 2.71 16 19 N -0.71 -16.43 5.50 -470.32 -2.59 -19.01 16 20 C 0.58 14.57 7.79 86.60 0.67 15.25 16 21 O -0.57 -17.54 16.80 -4.11 -0.07 -17.60 16 22 C -0.18 -3.79 5.98 -19.87 -0.12 -3.91 16 23 C -0.11 -1.90 10.10 22.67 0.23 -1.67 16 24 C -0.23 -2.75 11.12 66.64 0.74 -2.01 16 25 S 0.24 2.68 23.02 -56.49 -1.30 1.38 16 26 C -0.21 -3.43 10.38 67.30 0.70 -2.73 16 27 H 0.00 -0.19 7.40 -2.38 -0.02 -0.21 16 28 H 0.02 0.99 7.21 -2.39 -0.02 0.98 16 29 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.06 2.22 8.03 -2.38 -0.02 2.20 16 32 H 0.05 1.93 7.86 -2.39 -0.02 1.92 16 33 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.11 2.22 8.07 -2.39 -0.02 2.20 16 36 H 0.08 2.13 7.42 -2.39 -0.02 2.11 16 37 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 1.32 8.07 -2.39 -0.02 1.30 16 39 H 0.08 1.14 6.44 -2.39 -0.02 1.13 16 40 H 0.11 2.20 7.40 -2.39 -0.02 2.18 16 41 H 0.12 2.10 8.11 -2.39 -0.02 2.08 16 42 H 0.41 9.20 5.93 -92.71 -0.55 8.65 16 43 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.18 2.46 7.01 -2.91 -0.02 2.44 16 Total: -1.00 -77.04 390.24 2.30 -74.74 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.45 Total: 16.57 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 8.15 Total: 23.64 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.92 Total: -127.01 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.12 Total: -36.70 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.38 kcal Total: -77.04 2.30 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717215028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.389 kcal (2) G-P(sol) polarization free energy of solvation -77.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds