Wall clock time and date at job start Tue Mar 31 2020 23:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99977 * 2 1 4 4 C 1.50699 * 109.47150 * 184.74322 * 3 2 1 5 5 N 1.30941 * 122.90641 * 266.49778 * 4 3 2 6 6 C 1.29436 * 117.36598 * 180.34901 * 5 4 3 7 7 S 1.70950 * 110.38866 * 359.70489 * 6 5 4 8 8 C 1.35663 * 122.90473 * 86.30246 * 4 3 2 9 9 C 1.46680 * 126.12806 * 359.96543 * 8 4 3 10 10 O 1.21688 * 120.00154 * 353.20033 * 9 8 4 11 11 N 1.34779 * 119.99931 * 173.19660 * 9 8 4 12 12 C 1.47423 * 125.64810 * 4.06458 * 11 9 8 13 13 C 1.54907 * 104.83161 * 204.14656 * 12 11 9 14 14 C 1.55160 * 101.58309 * 322.98646 * 13 12 11 15 15 C 1.47027 * 125.64847 * 184.08006 * 11 9 8 16 16 H 1.08997 * 110.00637 * 59.43863 * 15 11 9 17 17 C 1.52998 * 109.88520 * 298.34016 * 15 11 9 18 18 N 1.46495 * 109.47342 * 176.09064 * 17 15 11 19 19 C 1.46499 * 120.00153 * 276.35302 * 18 17 15 20 20 C 1.36936 * 119.99817 * 96.35176 * 18 17 15 21 21 H 1.08000 * 119.99761 * 332.90318 * 20 18 17 22 22 C 1.38808 * 119.99917 * 153.18786 * 20 18 17 23 23 N 1.31612 * 120.00191 * 357.27735 * 22 20 18 24 24 Si 1.86799 * 119.99892 * 177.28336 * 22 20 18 25 25 H 1.48496 * 109.47497 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47390 * 119.99445 * 24 22 20 27 27 H 1.48507 * 109.47209 * 239.99938 * 24 22 20 28 28 H 1.09009 * 109.47269 * 64.85578 * 1 2 3 29 29 H 1.08996 * 109.47367 * 184.85904 * 1 2 3 30 30 H 1.08996 * 109.47066 * 304.86163 * 1 2 3 31 31 H 1.09000 * 109.47220 * 64.74837 * 3 2 1 32 32 H 1.08994 * 109.47566 * 304.74598 * 3 2 1 33 33 H 1.07998 * 124.80365 * 179.72797 * 6 5 4 34 34 H 1.09002 * 110.36833 * 85.30654 * 12 11 9 35 35 H 1.09003 * 110.36451 * 322.97948 * 12 11 9 36 36 H 1.09002 * 111.00415 * 204.91332 * 13 12 11 37 37 H 1.08999 * 111.00999 * 81.06058 * 13 12 11 38 38 H 1.09000 * 110.72222 * 277.14126 * 14 13 12 39 39 H 1.08995 * 110.87251 * 153.93424 * 14 13 12 40 40 H 1.09006 * 109.46827 * 56.08902 * 17 15 11 41 41 H 1.09004 * 109.47374 * 296.09817 * 17 15 11 42 42 H 1.08998 * 109.47021 * 271.66563 * 19 18 17 43 43 H 1.09003 * 109.47114 * 31.66670 * 19 18 17 44 44 H 1.09005 * 109.46943 * 151.66161 * 19 18 17 45 45 H 0.97003 * 120.00488 * 185.01248 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5080 1.1885 -0.1175 5 7 4.3033 1.1633 0.9224 6 6 5.5743 1.0668 0.6972 7 16 5.8770 0.9872 -0.9833 8 6 4.1488 1.0963 -1.3097 9 6 3.5167 1.0943 -2.6333 10 8 2.3042 1.0561 -2.7285 11 7 4.2790 1.1349 -3.7441 12 6 5.7524 1.0985 -3.7769 13 6 6.1360 1.7749 -5.1166 14 6 5.0086 1.2693 -6.0550 15 6 3.7787 1.2230 -5.1239 16 1 3.1853 2.1288 -5.2482 17 6 2.9266 -0.0057 -5.4480 18 7 2.3570 0.1353 -6.7902 19 6 1.1243 0.9025 -6.9860 20 6 2.9766 -0.4499 -7.8620 21 1 4.0421 -0.6250 -7.8402 22 6 2.2363 -0.8127 -8.9787 23 7 0.9311 -0.6436 -8.9864 24 14 3.0925 -1.5413 -10.4705 25 1 4.5521 -1.6265 -10.2111 26 1 2.5561 -2.9007 -10.7344 27 1 2.8500 -0.6754 -11.6524 28 1 -0.3634 0.4367 -0.9304 29 1 -0.3634 -1.0239 0.0870 30 1 -0.3633 0.5874 0.8432 31 1 1.7575 1.8158 0.9295 32 1 1.6229 1.8757 -0.8443 33 1 6.3356 1.0401 1.4627 34 1 6.1070 0.0679 -3.7570 35 1 6.1644 1.6586 -2.9375 36 1 7.1127 1.4344 -5.4606 37 1 6.1120 2.8609 -5.0270 38 1 5.2411 0.2750 -6.4364 39 1 4.8445 1.9671 -6.8760 40 1 2.1212 -0.0919 -4.7186 41 1 3.5489 -0.8999 -5.4094 42 1 0.2637 0.2456 -6.8597 43 1 1.0774 1.7079 -6.2530 44 1 1.1149 1.3248 -7.9908 45 1 0.4050 -0.9632 -9.7360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717372345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:29 Heat of formation + Delta-G solvation = -13.793531 kcal Electronic energy + Delta-G solvation = -28196.775160 eV Core-core repulsion = 24342.020113 eV Total energy + Delta-G solvation = -3854.755047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65445 -40.73570 -38.65972 -38.47972 -37.15068 -33.69318 -32.90675 -32.22061 -30.74657 -29.09537 -27.95834 -27.23262 -26.87461 -25.57084 -24.60809 -22.97373 -22.60978 -21.03359 -19.84993 -19.42569 -18.82071 -17.81836 -17.68969 -17.44402 -16.97676 -16.59926 -16.44508 -16.09113 -15.74810 -15.49980 -15.44997 -15.08189 -14.92230 -14.64428 -14.40360 -14.11820 -13.80036 -13.69917 -13.53701 -13.27391 -12.90156 -12.82968 -12.63895 -12.56475 -12.38173 -12.35510 -12.18377 -12.00401 -11.89710 -11.63732 -11.56280 -11.15505 -10.71173 -10.63323 -10.59892 -10.53709 -10.14435 -9.73078 -8.67554 -7.83245 -5.33507 -0.85700 0.11134 0.52721 1.28778 1.48982 1.49251 1.60017 1.78853 1.95696 2.52985 2.84359 3.25992 3.34450 3.43895 3.56195 3.79751 3.80072 3.93683 4.02856 4.07599 4.22363 4.32929 4.40695 4.43328 4.44618 4.49124 4.56050 4.58807 4.79201 4.79941 4.89358 4.90130 4.91716 5.07416 5.08656 5.13886 5.29398 5.39097 5.47152 5.62888 5.70676 6.09907 6.34907 6.38104 6.55479 6.96929 7.15840 7.83486 8.34405 9.24419 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003466 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.964159 B = 8075.453175 C = 9527.808012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.404 6.404 3 C 0.133 3.867 4 C 0.124 3.876 5 N -0.494 5.494 6 C 0.020 3.980 7 S 0.267 5.733 8 C -0.301 4.301 9 C 0.595 3.405 10 O -0.554 6.554 11 N -0.607 5.607 12 C 0.084 3.916 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.130 3.870 16 H 0.049 0.951 17 C 0.152 3.848 18 N -0.611 5.611 19 C 0.186 3.814 20 C -0.252 4.252 21 H 0.084 0.916 22 C -0.056 4.056 23 N -0.947 5.947 24 Si 0.971 3.029 25 H -0.257 1.257 26 H -0.297 1.297 27 H -0.293 1.293 28 H 0.033 0.967 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.022 0.978 41 H 0.044 0.956 42 H -0.013 1.013 43 H 0.006 0.994 44 H 0.038 0.962 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 6.607 19.089 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.323 6.323 3 C 0.054 3.946 4 C -0.015 4.015 5 N -0.209 5.209 6 C -0.274 4.274 7 S 0.524 5.476 8 C -0.426 4.426 9 C 0.383 3.617 10 O -0.434 6.434 11 N -0.340 5.340 12 C -0.039 4.039 13 C -0.152 4.152 14 C -0.146 4.146 15 C 0.024 3.976 16 H 0.067 0.933 17 C 0.025 3.975 18 N -0.335 5.335 19 C 0.041 3.959 20 C -0.382 4.382 21 H 0.102 0.898 22 C -0.250 4.250 23 N -0.594 5.594 24 Si 0.799 3.201 25 H -0.180 1.180 26 H -0.224 1.224 27 H -0.220 1.220 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.264 0.736 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.006 0.994 43 H 0.025 0.975 44 H 0.057 0.943 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.080 6.378 18.947 25.656 hybrid contribution -1.807 -0.278 -0.842 2.013 sum 14.273 6.100 18.105 23.848 Atomic orbital electron populations 1.22854 0.79119 1.03783 1.00538 1.87835 1.21662 1.27209 1.95562 1.20873 0.86086 0.85882 1.01712 1.20264 0.97166 0.97796 0.86298 1.66132 1.04068 1.17522 1.33141 1.29791 0.96036 0.98550 1.02995 1.83740 0.99406 1.63106 1.01303 1.25514 1.00077 1.19407 0.97609 1.16712 0.85776 0.76876 0.82331 1.90817 1.14621 1.51550 1.86417 1.48531 1.08517 1.71701 1.05295 1.22880 0.78184 1.02773 1.00066 1.22811 0.99474 1.01163 0.91785 1.22496 0.92602 1.02612 0.96863 1.22184 0.96925 0.98760 0.79709 0.93312 1.20994 0.95281 0.95280 0.85967 1.43981 1.27153 1.59671 1.02650 1.20444 0.87200 0.91248 0.96982 1.19678 0.92228 1.32686 0.93613 0.89830 1.26006 0.96025 1.00645 1.02320 1.70239 1.05854 1.50946 1.32412 0.85134 0.78769 0.77110 0.79079 1.18030 1.22393 1.22017 0.94795 0.88515 0.91831 0.90433 0.91455 0.73596 0.89081 0.88720 0.86364 0.89543 0.90961 0.90679 0.96003 0.93709 0.99444 0.97511 0.94346 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -13.27 10.69 -148.98 -1.59 -14.86 16 3 C 0.13 3.97 5.54 71.24 0.39 4.37 16 4 C 0.12 3.53 6.42 42.09 0.27 3.80 16 5 N -0.49 -11.72 10.50 -190.40 -2.00 -13.72 16 6 C 0.02 0.29 12.22 130.60 1.60 1.88 16 7 S 0.27 3.96 18.78 -56.49 -1.06 2.90 16 8 C -0.30 -8.25 6.38 23.88 0.15 -8.10 16 9 C 0.59 20.44 7.60 86.45 0.66 21.10 16 10 O -0.55 -23.64 13.29 -4.31 -0.06 -23.70 16 11 N -0.61 -18.48 3.06 -792.71 -2.43 -20.91 16 12 C 0.08 1.63 5.68 86.85 0.49 2.13 16 13 C -0.11 -2.06 7.08 31.99 0.23 -1.83 16 14 C -0.11 -3.13 5.75 31.78 0.18 -2.95 16 15 C 0.13 4.68 3.14 45.34 0.14 4.82 16 16 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 17 C 0.15 6.92 5.12 86.38 0.44 7.36 16 18 N -0.61 -32.10 2.80 -726.94 -2.03 -34.13 16 19 C 0.19 10.14 8.98 127.77 1.15 11.29 16 20 C -0.25 -13.62 9.02 84.03 0.76 -12.86 16 21 H 0.08 4.18 6.57 -2.91 -0.02 4.16 16 22 C -0.06 -3.14 5.25 84.86 0.45 -2.70 16 23 N -0.95 -57.51 10.47 21.65 0.23 -57.28 16 24 Si 0.97 44.50 29.56 68.60 2.03 46.52 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.21 6.42 -2.39 -0.02 2.20 16 33 H 0.25 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.10 1.38 4.91 -17.10 -0.08 1.29 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 2.28 6.52 -2.39 -0.02 2.27 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.02 1.11 6.58 -2.38 -0.02 1.09 16 41 H 0.04 2.02 7.90 -2.39 -0.02 2.00 16 42 H -0.01 -0.77 7.71 -2.39 -0.02 -0.79 16 43 H 0.01 0.33 7.98 -2.39 -0.02 0.31 16 44 H 0.04 2.19 6.85 -2.38 -0.02 2.18 16 45 H 0.25 14.56 8.32 -92.71 -0.77 13.79 16 Total: -1.00 -78.44 370.63 2.17 -76.27 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.93 Total: 8.51 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 8.16 Total: 30.40 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -6.24 Total: -126.04 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.65 Total: -38.56 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.06 Total: 2.90 kcal Total: -78.44 2.17 -76.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717372345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.479 kcal (2) G-P(sol) polarization free energy of solvation -78.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds