Wall clock time and date at job start Tue Mar 31 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46853 * 2 1 4 4 C 1.50697 * 109.47429 * 240.00564 * 2 1 3 5 5 O 1.21283 * 119.99928 * 245.41377 * 4 2 1 6 6 N 1.34780 * 120.00224 * 65.68446 * 4 2 1 7 7 C 1.46500 * 119.99617 * 4.64597 * 6 4 2 8 8 C 1.46493 * 120.00248 * 184.64451 * 6 4 2 9 9 C 1.53007 * 109.47154 * 90.00240 * 8 6 4 10 10 N 1.46498 * 109.47024 * 180.02562 * 9 8 6 11 11 C 1.34782 * 119.99608 * 179.97438 * 10 9 8 12 12 O 1.21277 * 119.99872 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99839 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99758 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00455 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99719 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99977 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47487 * 90.00330 * 19 17 15 21 21 H 1.48507 * 109.47019 * 210.00205 * 19 17 15 22 22 H 1.48505 * 109.47111 * 329.99922 * 19 17 15 23 23 N 1.46501 * 109.47502 * 120.00018 * 2 1 3 24 24 C 1.36348 * 125.62928 * 59.69543 * 23 2 1 25 25 C 1.34852 * 108.21096 * 179.83269 * 24 23 2 26 26 C 1.40883 * 107.42087 * 0.42556 * 25 24 23 27 27 C 1.34853 * 107.41990 * 359.73640 * 26 25 24 28 28 H 1.09004 * 109.47597 * 310.34973 * 1 2 3 29 29 H 1.08999 * 109.47446 * 70.35070 * 1 2 3 30 30 H 1.08998 * 109.47162 * 190.35162 * 1 2 3 31 31 H 1.08997 * 109.47514 * 95.81098 * 7 6 4 32 32 H 1.09006 * 109.47263 * 215.80825 * 7 6 4 33 33 H 1.08998 * 109.47628 * 335.80601 * 7 6 4 34 34 H 1.08999 * 109.47662 * 209.99861 * 8 6 4 35 35 H 1.08995 * 109.47279 * 330.00209 * 8 6 4 36 36 H 1.09011 * 109.46676 * 299.99894 * 9 8 6 37 37 H 1.08995 * 109.47053 * 59.99830 * 9 8 6 38 38 H 0.96992 * 120.00079 * 359.97438 * 10 9 8 39 39 H 1.09006 * 109.46805 * 300.00100 * 13 11 10 40 40 H 1.08998 * 109.46742 * 59.99620 * 13 11 10 41 41 H 0.97000 * 119.99224 * 180.02562 * 18 17 15 42 42 H 1.07994 * 125.89381 * 359.95920 * 24 23 2 43 43 H 1.07998 * 126.28519 * 180.16040 * 25 24 23 44 44 H 1.08005 * 126.29332 * 179.73795 * 26 25 24 45 45 H 1.07995 * 125.89530 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6465 -1.7504 -1.1220 6 7 1.8039 -0.1868 -2.4513 7 6 1.1575 1.1218 -2.5778 8 6 2.2020 -0.9263 -3.6516 9 6 1.0489 -1.8250 -4.1028 10 7 1.4473 -2.5650 -5.3028 11 6 0.5854 -3.4245 -5.8816 12 8 -0.5200 -3.5850 -5.4092 13 6 0.9949 -4.1853 -7.1163 14 16 -0.3691 -5.2486 -7.6500 15 6 0.3631 -5.9976 -9.0668 16 1 1.3716 -5.7390 -9.3539 17 6 -0.3567 -6.9192 -9.8146 18 7 0.1906 -7.4791 -10.8728 19 14 -2.1012 -7.3659 -9.3186 20 1 -3.0570 -6.4482 -9.9892 21 1 -2.3891 -8.7645 -9.7263 22 1 -2.2447 -7.2401 -7.8458 23 7 2.0184 -0.6906 1.1961 24 6 1.7560 -1.9869 1.5277 25 6 2.3800 -2.2587 2.6918 26 6 3.0441 -1.0847 3.0986 27 6 2.8054 -0.1417 2.1647 28 1 -0.3634 0.6654 0.7832 29 1 -0.3634 0.3456 -0.9678 30 1 -0.3633 -1.0109 0.1847 31 1 1.9187 1.8939 -2.6893 32 1 0.5079 1.1231 -3.4532 33 1 0.5647 1.3221 -1.6854 34 1 2.4470 -0.2228 -4.4473 35 1 3.0746 -1.5398 -3.4276 36 1 0.8039 -2.5287 -3.3071 37 1 0.1763 -1.2115 -4.3268 38 1 2.3312 -2.4363 -5.6808 39 1 1.2395 -3.4817 -7.9121 40 1 1.8679 -4.7984 -6.8924 41 1 -0.3126 -8.1228 -11.3956 42 1 1.1541 -2.6773 0.9557 43 1 2.3689 -3.2018 3.2180 44 1 3.6356 -0.9623 3.9939 45 1 3.1738 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721061755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:26 Heat of formation + Delta-G solvation = -1.982485 kcal Electronic energy + Delta-G solvation = -26194.729437 eV Core-core repulsion = 22340.486556 eV Total energy + Delta-G solvation = -3854.242882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78911 -40.22630 -39.24626 -36.53744 -35.20159 -34.22234 -32.45212 -30.86667 -29.75227 -28.95488 -28.45479 -27.33258 -25.64401 -24.94331 -23.22519 -20.96255 -20.75721 -20.43611 -19.51979 -17.94658 -17.83533 -17.61357 -16.67820 -16.55316 -15.95161 -15.57819 -15.53154 -15.06261 -14.91829 -14.57228 -14.05055 -13.98397 -13.83503 -13.73263 -13.57819 -13.38375 -13.26644 -12.86921 -12.81293 -12.58446 -12.49723 -12.31554 -12.30165 -12.14548 -12.00520 -11.56880 -11.28356 -11.02101 -10.64376 -10.40740 -9.88101 -9.63861 -9.31070 -9.09578 -9.00673 -8.85081 -8.52374 -8.30413 -6.93849 -6.30240 -4.02240 1.84405 1.93426 2.27897 2.62236 2.81086 2.91619 2.92079 3.30617 3.34207 3.49534 3.61881 3.73302 4.08579 4.16761 4.31864 4.37773 4.48968 4.54593 4.66245 4.71242 4.83318 4.87518 4.91840 5.03794 5.06618 5.08797 5.09662 5.26982 5.35104 5.45889 5.46370 5.49187 5.60508 5.73785 5.87403 5.98431 6.12155 6.12799 6.41292 6.64006 6.80969 7.02066 7.11023 7.49703 7.53080 7.92832 8.40256 8.41872 9.15843 10.78943 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.001895 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.878575 B =14774.394650 C =15238.612127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 H 0.121 0.879 4 C 0.502 3.498 5 O -0.507 6.507 6 N -0.610 5.610 7 C 0.057 3.943 8 C 0.105 3.895 9 C 0.109 3.891 10 N -0.735 5.735 11 C 0.533 3.467 12 O -0.518 6.518 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 N -0.436 5.436 24 C 0.019 3.981 25 C -0.208 4.208 26 C -0.195 4.195 27 C -0.024 4.024 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 23.274 23.426 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.139 0.861 4 C 0.287 3.713 5 O -0.381 6.381 6 N -0.345 5.345 7 C -0.085 4.085 8 C -0.018 4.018 9 C -0.017 4.017 10 N -0.390 5.390 11 C 0.318 3.682 12 O -0.392 6.392 13 C -0.274 4.274 14 S 0.085 5.915 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 N -0.113 5.113 24 C -0.110 4.110 25 C -0.232 4.232 26 C -0.219 4.219 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.174 0.826 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.036 22.488 23.833 32.908 hybrid contribution 1.073 0.011 -0.937 1.424 sum 4.109 22.500 22.896 32.363 Atomic orbital electron populations 1.22373 0.90971 1.05002 1.04414 1.21211 0.96981 0.97278 0.83340 0.86081 1.20728 0.80058 0.85928 0.84544 1.90816 1.38637 1.22916 1.85699 1.47610 1.61198 1.20329 1.05324 1.22258 0.98312 0.83535 1.04414 1.21627 0.98008 0.95689 0.86520 1.21547 0.97208 0.94900 0.88039 1.45786 1.18479 1.45167 1.29612 1.20295 0.84533 0.78623 0.84705 1.90701 1.20876 1.63880 1.63786 1.23277 1.05028 1.01960 0.97181 1.84795 1.19591 1.51038 1.36121 1.22313 1.04398 1.29061 1.11159 0.89352 1.24719 0.98492 0.94329 0.93800 1.69940 1.37750 1.27780 1.16146 0.86732 0.84400 0.78648 0.82049 1.19214 1.19909 1.15930 1.43703 1.40186 1.10711 1.16737 1.21703 1.05423 0.85511 0.98384 1.20875 1.04774 0.99344 0.98248 1.20867 1.06215 0.93814 1.01054 1.21740 1.01945 0.99814 0.91678 0.90119 0.89221 0.90526 0.91766 0.90145 0.89615 0.89346 0.88799 0.91364 0.91452 0.76544 0.88400 0.88329 0.91928 0.82635 0.84788 0.84817 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 8.82 37.15 0.33 -0.47 16 2 C 0.12 0.76 2.52 -69.09 -0.17 0.59 16 3 H 0.12 0.43 7.66 -51.92 -0.40 0.03 16 4 C 0.50 4.56 6.97 -10.99 -0.08 4.48 16 5 O -0.51 -6.94 14.91 5.55 0.08 -6.86 16 6 N -0.61 -4.08 2.87 -181.57 -0.52 -4.61 16 7 C 0.06 0.16 9.73 59.85 0.58 0.75 16 8 C 0.10 0.79 5.59 -4.04 -0.02 0.77 16 9 C 0.11 1.17 6.00 -4.04 -0.02 1.14 16 10 N -0.74 -9.00 5.56 -60.29 -0.33 -9.33 16 11 C 0.53 9.34 7.85 -10.98 -0.09 9.26 16 12 O -0.52 -11.16 15.86 5.56 0.09 -11.07 16 13 C -0.12 -2.37 6.16 36.01 0.22 -2.14 16 14 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 15 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 16 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 18 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 19 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 23 N -0.44 -4.00 2.43 -111.26 -0.27 -4.27 16 24 C 0.02 0.21 9.28 -16.75 -0.16 0.05 16 25 C -0.21 -2.24 10.86 -39.78 -0.43 -2.67 16 26 C -0.19 -1.89 10.86 -39.78 -0.43 -2.32 16 27 C -0.02 -0.21 11.39 -16.75 -0.19 -0.40 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.28 5.41 -51.93 -0.28 0.00 16 30 H 0.08 0.49 7.59 -51.93 -0.39 0.10 16 31 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.08 0.20 8.12 -51.93 -0.42 -0.22 16 33 H 0.09 0.11 4.12 -51.93 -0.21 -0.10 16 34 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.09 0.86 7.36 -51.93 -0.38 0.47 16 36 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 39 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 40 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 42 H 0.16 1.65 8.03 -52.49 -0.42 1.23 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -38.57 388.59 -7.94 -46.51 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.66 Total: 0.99 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.25 Total: -2.97 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.35 Total: -43.95 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.17 Total: -17.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.57 -7.94 -46.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721061755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.528 kcal (2) G-P(sol) polarization free energy of solvation -38.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds