Wall clock time and date at job start Tue Mar 31 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46853 * 2 1 4 4 C 1.50697 * 109.47429 * 240.00564 * 2 1 3 5 5 O 1.21283 * 119.99928 * 245.41377 * 4 2 1 6 6 N 1.34780 * 120.00224 * 65.68446 * 4 2 1 7 7 C 1.46500 * 119.99617 * 4.64597 * 6 4 2 8 8 C 1.46493 * 120.00248 * 184.64451 * 6 4 2 9 9 C 1.53007 * 109.47154 * 90.00240 * 8 6 4 10 10 N 1.46498 * 109.47024 * 180.02562 * 9 8 6 11 11 C 1.34782 * 119.99608 * 179.97438 * 10 9 8 12 12 O 1.21277 * 119.99872 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99839 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99758 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00455 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99719 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99977 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47487 * 90.00330 * 19 17 15 21 21 H 1.48507 * 109.47019 * 210.00205 * 19 17 15 22 22 H 1.48505 * 109.47111 * 329.99922 * 19 17 15 23 23 N 1.46501 * 109.47502 * 120.00018 * 2 1 3 24 24 C 1.36348 * 125.62928 * 59.69543 * 23 2 1 25 25 C 1.34852 * 108.21096 * 179.83269 * 24 23 2 26 26 C 1.40883 * 107.42087 * 0.42556 * 25 24 23 27 27 C 1.34853 * 107.41990 * 359.73640 * 26 25 24 28 28 H 1.09004 * 109.47597 * 310.34973 * 1 2 3 29 29 H 1.08999 * 109.47446 * 70.35070 * 1 2 3 30 30 H 1.08998 * 109.47162 * 190.35162 * 1 2 3 31 31 H 1.08997 * 109.47514 * 95.81098 * 7 6 4 32 32 H 1.09006 * 109.47263 * 215.80825 * 7 6 4 33 33 H 1.08998 * 109.47628 * 335.80601 * 7 6 4 34 34 H 1.08999 * 109.47662 * 209.99861 * 8 6 4 35 35 H 1.08995 * 109.47279 * 330.00209 * 8 6 4 36 36 H 1.09011 * 109.46676 * 299.99894 * 9 8 6 37 37 H 1.08995 * 109.47053 * 59.99830 * 9 8 6 38 38 H 0.96992 * 120.00079 * 359.97438 * 10 9 8 39 39 H 1.09006 * 109.46805 * 300.00100 * 13 11 10 40 40 H 1.08998 * 109.46742 * 59.99620 * 13 11 10 41 41 H 0.97000 * 119.99224 * 180.02562 * 18 17 15 42 42 H 1.07994 * 125.89381 * 359.95920 * 24 23 2 43 43 H 1.07998 * 126.28519 * 180.16040 * 25 24 23 44 44 H 1.08005 * 126.29332 * 179.73795 * 26 25 24 45 45 H 1.07995 * 125.89530 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6465 -1.7504 -1.1220 6 7 1.8039 -0.1868 -2.4513 7 6 1.1575 1.1218 -2.5778 8 6 2.2020 -0.9263 -3.6516 9 6 1.0489 -1.8250 -4.1028 10 7 1.4473 -2.5650 -5.3028 11 6 0.5854 -3.4245 -5.8816 12 8 -0.5200 -3.5850 -5.4092 13 6 0.9949 -4.1853 -7.1163 14 16 -0.3691 -5.2486 -7.6500 15 6 0.3631 -5.9976 -9.0668 16 1 1.3716 -5.7390 -9.3539 17 6 -0.3567 -6.9192 -9.8146 18 7 0.1906 -7.4791 -10.8728 19 14 -2.1012 -7.3659 -9.3186 20 1 -3.0570 -6.4482 -9.9892 21 1 -2.3891 -8.7645 -9.7263 22 1 -2.2447 -7.2401 -7.8458 23 7 2.0184 -0.6906 1.1961 24 6 1.7560 -1.9869 1.5277 25 6 2.3800 -2.2587 2.6918 26 6 3.0441 -1.0847 3.0986 27 6 2.8054 -0.1417 2.1647 28 1 -0.3634 0.6654 0.7832 29 1 -0.3634 0.3456 -0.9678 30 1 -0.3633 -1.0109 0.1847 31 1 1.9187 1.8939 -2.6893 32 1 0.5079 1.1231 -3.4532 33 1 0.5647 1.3221 -1.6854 34 1 2.4470 -0.2228 -4.4473 35 1 3.0746 -1.5398 -3.4276 36 1 0.8039 -2.5287 -3.3071 37 1 0.1763 -1.2115 -4.3268 38 1 2.3312 -2.4363 -5.6808 39 1 1.2395 -3.4817 -7.9121 40 1 1.8679 -4.7984 -6.8924 41 1 -0.3126 -8.1228 -11.3956 42 1 1.1541 -2.6773 0.9557 43 1 2.3689 -3.2018 3.2180 44 1 3.6356 -0.9623 3.9939 45 1 3.1738 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721061755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:25 Heat of formation + Delta-G solvation = -29.332008 kcal Electronic energy + Delta-G solvation = -26195.915401 eV Core-core repulsion = 22340.486556 eV Total energy + Delta-G solvation = -3855.428846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43828 -41.00132 -40.50548 -37.31486 -36.02651 -35.05429 -34.68313 -31.99182 -30.56392 -29.70958 -29.31307 -27.89117 -27.76264 -25.58915 -23.97486 -22.03242 -21.53985 -21.27215 -20.22499 -19.85691 -18.49409 -18.24722 -17.92180 -17.60565 -17.10261 -16.80440 -16.69054 -16.40939 -15.80538 -15.44923 -15.36221 -14.93718 -14.85611 -14.71882 -14.59244 -14.40123 -14.10217 -13.73891 -13.63440 -13.40304 -13.36407 -13.22334 -13.17666 -13.02848 -13.00133 -12.71886 -12.68042 -12.51507 -12.32146 -11.88821 -11.20410 -11.18323 -11.01646 -10.55916 -10.25834 -9.89674 -9.55349 -9.03013 -9.01722 -8.52832 -6.23934 0.94643 1.19551 1.28913 1.29916 1.45492 1.49830 1.53338 1.70392 2.03412 2.16362 2.23429 2.36067 2.70711 2.85334 3.21523 3.66482 3.73521 3.74859 3.88055 3.89386 4.08377 4.16893 4.20973 4.33056 4.36773 4.44597 4.49121 4.54711 4.64634 4.64947 4.72630 4.77984 4.83904 4.89557 5.12063 5.20232 5.37663 5.39325 5.42558 5.69520 6.08233 6.09711 6.10300 6.28772 6.37622 6.48791 6.90270 6.92274 7.11787 8.59449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.001895 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.878575 B =14774.394650 C =15238.612127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 H 0.161 0.839 4 C 0.495 3.505 5 O -0.565 6.565 6 N -0.604 5.604 7 C 0.048 3.952 8 C 0.112 3.888 9 C 0.113 3.887 10 N -0.709 5.709 11 C 0.536 3.464 12 O -0.563 6.563 13 C -0.111 4.111 14 S -0.177 6.177 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.045 3.955 18 N -0.916 5.916 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.260 1.260 22 H -0.239 1.239 23 N -0.438 5.438 24 C -0.004 4.004 25 C -0.229 4.229 26 C -0.219 4.219 27 C -0.016 4.016 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.419 0.581 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.277 0.723 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 26.682 24.087 36.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.178 0.822 4 C 0.282 3.718 5 O -0.443 6.443 6 N -0.337 5.337 7 C -0.093 4.093 8 C -0.011 4.011 9 C -0.012 4.012 10 N -0.364 5.364 11 C 0.322 3.678 12 O -0.441 6.441 13 C -0.262 4.262 14 S 0.049 5.951 15 C -0.676 4.676 16 H 0.082 0.918 17 C -0.160 4.160 18 N -0.554 5.554 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.163 1.163 23 N -0.115 5.115 24 C -0.134 4.134 25 C -0.253 4.253 26 C -0.243 4.243 27 C -0.144 4.144 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.257 0.743 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.024 25.964 24.475 35.810 hybrid contribution 1.210 -0.926 -1.116 1.889 sum 4.234 25.038 23.359 34.503 Atomic orbital electron populations 1.22386 0.89664 1.04091 1.06145 1.21520 0.97887 0.98273 0.81045 0.82154 1.21289 0.79256 0.85320 0.85914 1.90795 1.41415 1.25447 1.86604 1.47724 1.60439 1.21271 1.04234 1.22591 0.99184 0.81714 1.05764 1.21543 0.95768 0.95948 0.87884 1.21611 0.99008 0.94437 0.86127 1.45520 1.18391 1.43272 1.29248 1.19984 0.84470 0.79134 0.84242 1.90691 1.22867 1.65635 1.64928 1.23266 1.02609 1.01591 0.98719 1.84730 1.22978 1.52692 1.34684 1.22454 1.03546 1.29248 1.12401 0.91840 1.25570 1.02269 0.94367 0.93840 1.70017 1.39461 1.28646 1.17243 0.85865 0.79893 0.79128 0.81472 1.18473 1.18390 1.16270 1.43907 1.39903 1.10142 1.17516 1.21660 1.06286 0.86761 0.98702 1.21123 1.05396 1.00165 0.98655 1.21160 1.07056 0.93760 1.02344 1.22336 1.00440 1.00992 0.90679 0.88273 0.87363 0.92985 0.89553 0.89289 0.87874 0.85754 0.90424 0.94517 0.90744 0.74317 0.86236 0.86959 0.91357 0.83798 0.84784 0.83460 0.78836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 8.82 71.98 0.64 -0.56 16 2 C 0.12 1.25 2.52 44.24 0.11 1.36 16 3 H 0.16 0.39 7.66 -2.38 -0.02 0.38 16 4 C 0.50 8.37 6.97 87.66 0.61 8.98 16 5 O -0.56 -15.79 14.91 -3.04 -0.05 -15.83 16 6 N -0.60 -6.52 2.87 -846.76 -2.43 -8.95 16 7 C 0.05 0.07 9.73 127.77 1.24 1.31 16 8 C 0.11 1.44 5.59 86.38 0.48 1.92 16 9 C 0.11 2.27 6.00 86.38 0.52 2.79 16 10 N -0.71 -16.02 5.56 -463.04 -2.57 -18.59 16 11 C 0.54 18.20 7.85 87.66 0.69 18.89 16 12 O -0.56 -24.10 15.86 -3.02 -0.05 -24.15 16 13 C -0.11 -4.11 6.16 71.24 0.44 -3.67 16 14 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 15 C -0.53 -30.77 10.04 67.96 0.68 -30.09 16 16 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 17 C 0.05 2.65 5.50 84.86 0.47 3.11 16 18 N -0.92 -55.76 13.97 21.65 0.30 -55.45 16 19 Si 0.91 45.11 27.74 68.60 1.90 47.01 16 20 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 23 N -0.44 -7.59 2.43 -505.91 -1.23 -8.82 16 24 C 0.00 -0.10 9.28 83.21 0.77 0.68 16 25 C -0.23 -5.17 10.86 22.14 0.24 -4.93 16 26 C -0.22 -4.14 10.86 22.14 0.24 -3.90 16 27 C -0.02 -0.25 11.39 83.21 0.95 0.70 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.11 0.35 5.41 -2.39 -0.01 0.33 16 30 H 0.05 0.66 7.59 -2.39 -0.02 0.64 16 31 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.09 0.05 8.12 -2.38 -0.02 0.03 16 33 H 0.10 -0.20 4.12 -2.39 -0.01 -0.21 16 34 H 0.12 0.75 8.07 -2.39 -0.02 0.73 16 35 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 36 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.42 6.46 8.47 -92.71 -0.79 5.67 16 39 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.14 3.45 8.03 -2.91 -0.02 3.42 16 43 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 45 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -87.88 388.59 3.08 -84.79 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.18 Total: 13.43 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 8.08 Total: -3.41 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -5.93 Total: -91.82 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.09 Total: -39.99 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -87.88 3.08 -84.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721061755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.460 kcal (2) G-P(sol) polarization free energy of solvation -87.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds