Wall clock time and date at job start Tue Mar 31 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 5 5 O 1.21274 * 120.00413 * 120.26898 * 4 2 1 6 6 N 1.34784 * 119.99635 * 299.99856 * 4 2 1 7 7 C 1.46499 * 119.99893 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99971 * 179.97438 * 6 4 2 9 9 C 1.52999 * 109.47276 * 89.99654 * 8 6 4 10 10 N 1.46499 * 109.47276 * 179.97438 * 9 8 6 11 11 C 1.34781 * 119.99918 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99858 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00030 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.46980 * 179.97438 * 13 11 10 15 15 C 1.76206 * 99.99500 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00120 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99800 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00297 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99809 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46501 * 90.00199 * 19 17 15 21 21 H 1.48500 * 109.47018 * 209.99907 * 19 17 15 22 22 H 1.48497 * 109.47099 * 330.00265 * 19 17 15 23 23 N 1.46506 * 109.46756 * 240.00267 * 2 1 3 24 24 C 1.36338 * 125.63587 * 299.69136 * 23 2 1 25 25 C 1.34849 * 108.21633 * 179.83239 * 24 23 2 26 26 C 1.40888 * 107.41732 * 0.42524 * 25 24 23 27 27 C 1.34851 * 107.42059 * 359.73730 * 26 25 24 28 28 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 29 29 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 30 30 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47008 * 90.00348 * 7 6 4 32 32 H 1.08997 * 109.46865 * 210.00034 * 7 6 4 33 33 H 1.08998 * 109.47058 * 329.99547 * 7 6 4 34 34 H 1.08998 * 109.47416 * 209.99869 * 8 6 4 35 35 H 1.09008 * 109.47058 * 330.00468 * 8 6 4 36 36 H 1.08998 * 109.47074 * 300.00425 * 9 8 6 37 37 H 1.09007 * 109.46853 * 59.99785 * 9 8 6 38 38 H 0.96994 * 119.99898 * 0.02562 * 10 9 8 39 39 H 1.09004 * 109.46763 * 300.00257 * 13 11 10 40 40 H 1.09006 * 109.46575 * 59.99813 * 13 11 10 41 41 H 0.96996 * 120.00671 * 180.02562 * 18 17 15 42 42 H 1.08003 * 125.89080 * 359.96689 * 24 23 2 43 43 H 1.08000 * 126.29572 * 180.16445 * 25 24 23 44 44 H 1.08005 * 126.29046 * 179.73777 * 26 25 24 45 45 H 1.07998 * 125.89185 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7336 -1.6936 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 0.8640 0.9407 2.5890 8 6 2.1947 -0.9410 3.6506 9 6 3.5427 -0.3493 4.0673 10 7 4.0303 -1.0399 5.2638 11 6 5.2078 -0.6838 5.8145 12 8 5.8639 0.2080 5.3193 13 6 5.7097 -1.3946 7.0450 14 16 7.3043 -0.6944 7.5379 15 6 7.6459 -1.6810 8.9573 16 1 6.9460 -2.4433 9.2663 17 6 8.8145 -1.4783 9.6784 18 7 9.0700 -2.2155 10.7384 19 14 10.0253 -0.1602 9.1435 20 1 9.6859 1.1231 9.8093 21 1 11.4013 -0.5676 9.5259 22 1 9.9512 0.0116 7.6704 23 7 2.0182 -0.6906 -1.1963 24 6 1.7655 -1.9901 -1.5221 25 6 2.3797 -2.2585 -2.6921 26 6 3.0439 -1.0845 -3.0988 27 6 2.8054 -0.1415 -2.1647 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.1837 0.6424 2.6226 32 1 1.1218 1.4662 3.5085 33 1 1.0272 1.5995 1.7361 34 1 1.4767 -0.8155 4.4611 35 1 2.3155 -2.0024 3.4333 36 1 4.2606 -0.4749 3.2568 37 1 3.4220 0.7120 4.2846 38 1 3.5057 -1.7533 5.6596 39 1 4.9913 -1.2694 7.8552 40 1 5.8308 -2.4558 6.8274 41 1 9.8864 -2.0738 11.2426 42 1 1.1734 -2.6842 -0.9439 43 1 2.3685 -3.2015 -3.2185 44 1 3.6353 -0.9621 -3.9942 45 1 3.1746 0.8733 -2.1808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721061756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:28 Heat of formation + Delta-G solvation = -31.231356 kcal Electronic energy + Delta-G solvation = -26126.878432 eV Core-core repulsion = 22271.367225 eV Total energy + Delta-G solvation = -3855.511208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43016 -41.00234 -40.50667 -37.31659 -36.05128 -35.01773 -34.68507 -32.00169 -30.54409 -29.69848 -29.24641 -27.90828 -27.79941 -25.59786 -23.91197 -22.04997 -21.54396 -21.28714 -20.23595 -19.86683 -18.49197 -18.21273 -17.91406 -17.68544 -17.11574 -16.80588 -16.74764 -16.25969 -15.74608 -15.53362 -15.26214 -15.00549 -14.85490 -14.69742 -14.55848 -14.36525 -14.17577 -13.72659 -13.57367 -13.40506 -13.36545 -13.20384 -13.16797 -13.02836 -12.98994 -12.68615 -12.65340 -12.50662 -12.38485 -11.88964 -11.20311 -11.18435 -11.02346 -10.55905 -10.26143 -9.90813 -9.54429 -9.03318 -9.01930 -8.52816 -6.23999 0.94550 1.18108 1.29777 1.33138 1.44933 1.49514 1.52459 1.70684 2.03673 2.16070 2.23385 2.36480 2.70807 2.85277 3.21458 3.67357 3.73533 3.77912 3.87711 3.90248 4.07856 4.20890 4.23285 4.32793 4.35828 4.44338 4.53958 4.57239 4.64034 4.67072 4.73981 4.77159 4.84274 4.91761 5.12102 5.20377 5.37830 5.39381 5.41283 5.69523 6.08182 6.09482 6.10271 6.29918 6.37739 6.47590 6.90926 6.92272 7.11886 8.59423 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.001881 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.440096 B =14884.624793 C =15490.677716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 H 0.150 0.850 4 C 0.495 3.505 5 O -0.565 6.565 6 N -0.603 5.603 7 C 0.056 3.944 8 C 0.113 3.887 9 C 0.113 3.887 10 N -0.709 5.709 11 C 0.535 3.465 12 O -0.564 6.564 13 C -0.110 4.110 14 S -0.179 6.179 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.045 3.955 18 N -0.916 5.916 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.239 1.239 23 N -0.438 5.438 24 C 0.001 3.999 25 C -0.230 4.230 26 C -0.220 4.220 27 C -0.023 4.023 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.420 0.580 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.277 0.723 42 H 0.156 0.844 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.849 7.768 -23.268 36.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 H 0.167 0.833 4 C 0.282 3.718 5 O -0.443 6.443 6 N -0.336 5.336 7 C -0.085 4.085 8 C -0.010 4.010 9 C -0.012 4.012 10 N -0.364 5.364 11 C 0.321 3.679 12 O -0.442 6.442 13 C -0.261 4.261 14 S 0.048 5.952 15 C -0.676 4.676 16 H 0.082 0.918 17 C -0.160 4.160 18 N -0.553 5.553 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.163 1.163 23 N -0.115 5.115 24 C -0.129 4.129 25 C -0.254 4.254 26 C -0.244 4.244 27 C -0.152 4.152 28 H 0.137 0.863 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.257 0.743 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.173 0.827 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -25.453 8.859 -23.700 35.889 hybrid contribution 0.208 -1.480 1.032 1.816 sum -25.245 7.380 -22.668 34.722 Atomic orbital electron populations 1.22410 0.88721 1.04311 1.06561 1.21532 0.98704 0.97737 0.80992 0.83270 1.21271 0.79979 0.84627 0.85882 1.90801 1.38584 1.28253 1.86660 1.47736 1.51099 1.30544 1.04223 1.22513 0.95187 0.85496 1.05311 1.21567 0.93953 0.97350 0.88142 1.21612 0.96010 0.97413 0.86203 1.45512 1.21221 1.39995 1.29643 1.20009 0.81061 0.82527 0.84302 1.90696 1.57499 1.32335 1.63713 1.23262 1.00041 1.03936 0.98876 1.84751 1.23819 1.51245 1.35407 1.22448 1.10123 1.22382 1.12630 0.91792 1.25564 0.98775 0.97792 0.93917 1.70004 1.27091 1.40359 1.17888 0.85869 0.79277 0.79771 0.81464 1.18476 1.18378 1.16319 1.43926 1.39925 1.10190 1.17419 1.21745 1.06330 0.86353 0.98491 1.21130 1.05586 0.99986 0.98724 1.21161 1.06907 0.94102 1.02252 1.22266 1.00742 1.00960 0.91234 0.86292 0.89465 0.92274 0.88881 0.89201 0.88792 0.85510 0.90324 0.94793 0.90894 0.74262 0.86165 0.86929 0.91345 0.82670 0.84427 0.83810 0.79715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.88 71.98 0.64 -0.03 16 2 C 0.12 1.23 2.55 44.24 0.11 1.34 16 3 H 0.15 0.76 7.32 -2.39 -0.02 0.74 16 4 C 0.50 8.30 7.03 87.65 0.62 8.92 16 5 O -0.57 -15.79 15.03 -3.01 -0.05 -15.83 16 6 N -0.60 -6.31 2.87 -846.77 -2.43 -8.74 16 7 C 0.06 0.05 8.80 127.77 1.12 1.18 16 8 C 0.11 1.41 5.52 86.38 0.48 1.89 16 9 C 0.11 2.31 6.00 86.38 0.52 2.83 16 10 N -0.71 -16.17 5.56 -463.04 -2.57 -18.74 16 11 C 0.54 18.38 7.85 87.66 0.69 19.07 16 12 O -0.56 -24.51 15.86 -3.05 -0.05 -24.56 16 13 C -0.11 -4.10 6.16 71.24 0.44 -3.67 16 14 S -0.18 -9.08 18.55 -56.49 -1.05 -10.12 16 15 C -0.53 -30.77 10.04 67.96 0.68 -30.09 16 16 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 17 C 0.05 2.65 5.50 84.86 0.47 3.12 16 18 N -0.92 -55.78 13.97 21.65 0.30 -55.48 16 19 Si 0.91 45.24 27.74 68.60 1.90 47.14 16 20 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 23 N -0.44 -7.73 2.40 -505.91 -1.21 -8.95 16 24 C 0.00 0.01 9.56 83.21 0.80 0.81 16 25 C -0.23 -5.04 10.86 22.14 0.24 -4.80 16 26 C -0.22 -4.47 10.86 22.14 0.24 -4.23 16 27 C -0.02 -0.41 11.39 83.21 0.95 0.53 16 28 H 0.12 -0.21 4.53 -2.38 -0.01 -0.23 16 29 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.06 0.42 7.92 -2.39 -0.02 0.40 16 31 H 0.09 -0.31 6.95 -2.39 -0.02 -0.33 16 32 H 0.09 0.02 8.07 -2.39 -0.02 0.00 16 33 H 0.09 -0.22 6.01 -2.39 -0.01 -0.23 16 34 H 0.13 0.67 8.07 -2.39 -0.02 0.65 16 35 H 0.08 1.27 7.43 -2.38 -0.02 1.26 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.42 6.43 8.47 -92.71 -0.79 5.65 16 39 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 40 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 41 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 45 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -88.62 387.98 3.01 -85.61 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.18 Total: 12.81 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 7.99 Total: -3.13 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -5.92 Total: -91.91 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.09 Total: -40.39 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -88.62 3.01 -85.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721061756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.383 kcal (2) G-P(sol) polarization free energy of solvation -88.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds