Wall clock time and date at job start Tue Mar 31 2020 23:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00236 * 2 1 4 4 C 1.53001 * 109.47169 * 270.00186 * 3 2 1 5 5 O 1.42902 * 109.46973 * 64.99904 * 4 3 2 6 6 C 1.42898 * 113.99703 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46879 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46860 * 65.00548 * 7 6 5 9 9 C 1.36932 * 119.99797 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00280 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00290 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99386 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00437 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47031 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46959 * 119.99983 * 13 11 9 16 16 H 1.48497 * 109.47475 * 240.00296 * 13 11 9 17 17 C 1.34780 * 120.00413 * 180.02562 * 2 1 3 18 18 O 1.21681 * 120.00333 * 182.35799 * 17 2 1 19 19 C 1.46687 * 119.99488 * 2.35414 * 17 2 1 20 20 C 1.35663 * 126.12769 * 342.23027 * 19 17 2 21 21 N 1.30947 * 114.18685 * 180.02562 * 20 19 17 22 22 C 1.29427 * 117.36478 * 0.02562 * 21 20 19 23 23 C 1.50699 * 124.80445 * 179.97438 * 22 21 20 24 24 C 1.53003 * 117.49947 * 8.65059 * 23 22 21 25 25 C 1.53001 * 117.49871 * 300.02689 * 23 22 21 26 26 S 1.70949 * 110.39037 * 0.02562 * 22 21 20 27 27 H 1.09000 * 109.47089 * 264.61751 * 1 2 3 28 28 H 1.09003 * 109.47178 * 24.61574 * 1 2 3 29 29 H 1.09001 * 109.47127 * 144.61066 * 1 2 3 30 30 H 1.09006 * 109.47279 * 30.00023 * 3 2 1 31 31 H 1.09005 * 109.47510 * 150.00157 * 3 2 1 32 32 H 1.09008 * 109.46870 * 184.99504 * 4 3 2 33 33 H 1.08993 * 109.47615 * 304.99586 * 4 3 2 34 34 H 1.08994 * 109.47894 * 299.99699 * 6 5 4 35 35 H 1.08998 * 109.47052 * 60.00751 * 6 5 4 36 36 H 1.09005 * 109.46823 * 185.00227 * 7 6 5 37 37 H 1.08993 * 109.47260 * 305.00033 * 7 6 5 38 38 H 0.96993 * 119.99851 * 0.02562 * 8 7 6 39 39 H 0.97006 * 119.99880 * 179.97438 * 12 11 9 40 40 H 1.07994 * 122.90820 * 0.06311 * 20 19 17 41 41 H 1.09003 * 115.54911 * 154.35714 * 23 22 21 42 42 H 1.09004 * 117.49714 * 359.97438 * 24 23 22 43 43 H 1.08994 * 117.50229 * 145.01558 * 24 23 22 44 44 H 1.09000 * 117.49953 * 214.97807 * 25 23 22 45 45 H 1.09003 * 117.50188 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9936 -2.0813 6 6 1.3324 2.4176 -3.4401 7 6 -0.0567 2.6906 -4.0205 8 7 -0.6662 3.8218 -3.3167 9 6 -1.9184 4.2515 -3.6666 10 1 -2.4565 3.7568 -4.4618 11 6 -2.4962 5.3229 -2.9995 12 7 -1.8403 5.9260 -2.0309 13 14 -4.2041 5.9096 -3.4773 14 1 -4.7231 5.0707 -4.5874 15 1 -5.1114 5.7977 -2.3070 16 1 -4.1359 7.3263 -3.9171 17 6 2.1389 -1.1672 -0.0005 18 8 3.3550 -1.1676 0.0428 19 6 1.4064 -2.4370 -0.0533 20 6 0.0918 -2.6144 0.2309 21 7 -0.3216 -3.8508 0.1080 22 6 0.5488 -4.7353 -0.2598 23 6 0.2568 -6.2011 -0.4525 24 6 -1.2066 -6.6437 -0.3933 25 6 -0.2572 -6.9841 0.7573 26 16 2.0768 -4.0056 -0.4946 27 1 -0.3633 -0.0964 1.0231 28 1 -0.3634 0.9343 -0.4281 29 1 -0.3633 -0.8378 -0.5952 30 1 1.6084 2.0284 0.5139 31 1 3.1500 1.1384 0.5138 32 1 3.0732 2.6065 -1.4438 33 1 2.9642 0.9132 -1.9816 34 1 1.9296 3.3283 -3.4826 35 1 1.8209 1.6352 -4.0209 36 1 0.0327 2.9278 -5.0806 37 1 -0.6821 1.8065 -3.8975 38 1 -0.1825 4.2667 -2.6034 39 1 -2.2439 6.6750 -1.5649 40 1 -0.5578 -1.8058 0.5318 41 1 0.9133 -6.7237 -1.1483 42 1 -1.9581 -5.8747 -0.2146 43 1 -1.5132 -7.4575 -1.0504 44 1 0.0607 -8.0219 0.8572 45 1 -0.3839 -6.4391 1.6928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725802892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:30 Heat of formation + Delta-G solvation = 27.476530 kcal Electronic energy + Delta-G solvation = -26531.817616 eV Core-core repulsion = 22678.852173 eV Total energy + Delta-G solvation = -3852.965443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71934 -39.54812 -37.75276 -37.23869 -35.70127 -34.40124 -31.94102 -31.13443 -29.32609 -27.67438 -27.38623 -26.23037 -23.55141 -23.32988 -22.88165 -22.77743 -21.15736 -20.85189 -19.35419 -18.30603 -17.16399 -17.00173 -16.56334 -16.27712 -16.03672 -15.74713 -15.25756 -15.03149 -14.79978 -14.50649 -14.39966 -13.87071 -13.68933 -13.14466 -13.09208 -12.95892 -12.68646 -12.67582 -12.29874 -11.92407 -11.81470 -11.73051 -11.49124 -11.40055 -11.16379 -11.06334 -10.91278 -10.81078 -10.50522 -10.38535 -9.98771 -9.81398 -9.70794 -9.69292 -9.25329 -9.05525 -8.87772 -8.77750 -6.88122 -5.73387 -3.01354 -0.01693 0.83530 1.38925 2.17516 2.87879 2.97771 3.39803 3.44434 3.50114 3.52320 3.69114 3.98458 4.31553 4.36146 4.39146 4.53527 4.61788 4.88038 4.91521 5.06038 5.10729 5.22162 5.23471 5.35742 5.39102 5.43655 5.53136 5.55745 5.57439 5.61852 5.70018 5.73721 5.79799 5.82333 5.89990 5.97632 6.34642 6.36075 6.60644 6.75020 7.15446 7.33557 7.56914 7.72295 7.92032 8.45279 9.56987 10.15400 10.51624 11.49489 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.002422 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.481345 B =11556.833324 C =12839.153714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.588 5.588 3 C 0.121 3.879 4 C 0.044 3.956 5 O -0.371 6.371 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.592 3.408 18 O -0.543 6.543 19 C -0.295 4.295 20 C 0.077 3.923 21 N -0.479 5.479 22 C 0.071 3.929 23 C -0.104 4.104 24 C -0.147 4.147 25 C -0.154 4.154 26 S 0.226 5.774 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.387 0.613 39 H 0.254 0.746 40 H 0.203 0.797 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 -24.788 5.914 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.320 5.320 3 C -0.002 4.002 4 C -0.034 4.034 5 O -0.290 6.290 6 C -0.018 4.018 7 C 0.027 3.973 8 N -0.372 5.372 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.379 3.621 18 O -0.423 6.423 19 C -0.419 4.419 20 C -0.080 4.080 21 N -0.193 5.193 22 C -0.203 4.203 23 C -0.125 4.125 24 C -0.186 4.186 25 C -0.193 4.193 26 S 0.486 5.514 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.221 0.779 39 H 0.063 0.937 40 H 0.219 0.781 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.002 -25.328 5.709 27.480 hybrid contribution -1.157 1.416 0.032 1.829 sum 7.845 -23.912 5.741 25.812 Atomic orbital electron populations 1.22540 0.78668 1.06052 1.01324 1.47485 1.07654 1.05107 1.71708 1.21653 0.98411 0.84101 0.95997 1.22858 0.87679 0.99174 0.93680 1.87991 1.27732 1.87490 1.25772 1.22778 0.99284 0.97428 0.82294 1.20686 0.90203 0.91896 0.94504 1.42289 1.17724 1.34898 1.42256 1.19279 0.92604 1.10772 1.14178 0.91243 1.24730 0.98624 0.98966 0.98759 1.69682 1.37678 1.24971 1.25765 0.86131 0.84339 0.78304 0.77517 1.20606 1.21890 1.21938 1.16765 0.86368 0.82150 0.76784 1.90820 1.12838 1.87264 1.51342 1.25674 0.99080 0.99388 1.17786 1.23279 0.92658 0.94241 0.97821 1.66128 1.35609 1.00817 1.16721 1.26536 0.93490 0.99390 1.00847 1.20565 1.00704 0.86868 1.04382 1.23039 0.91372 1.03199 1.00956 1.23066 1.02760 1.00303 0.93170 1.83959 1.10901 0.96998 1.59590 0.92046 0.88027 0.90058 0.88656 0.88336 0.92315 0.93573 0.93341 0.94047 0.95096 0.95684 0.77938 0.93658 0.78056 0.85307 0.87141 0.87893 0.87711 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.54 59.84 0.51 1.16 16 2 N -0.59 -7.64 2.84 -183.12 -0.52 -8.16 16 3 C 0.12 1.53 5.80 -4.04 -0.02 1.51 16 4 C 0.04 0.62 6.28 37.16 0.23 0.85 16 5 O -0.37 -6.35 9.21 -35.23 -0.32 -6.68 16 6 C 0.06 1.00 6.07 37.16 0.23 1.23 16 7 C 0.15 3.19 6.65 -4.04 -0.03 3.16 16 8 N -0.73 -18.74 5.55 -59.90 -0.33 -19.07 16 9 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 13 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 C 0.59 8.38 7.65 -12.85 -0.10 8.28 16 18 O -0.54 -9.03 16.58 5.21 0.09 -8.94 16 19 C -0.29 -3.66 6.24 -37.09 -0.23 -3.90 16 20 C 0.08 0.87 9.29 -18.85 -0.18 0.70 16 21 N -0.48 -5.47 9.98 -11.50 -0.11 -5.58 16 22 C 0.07 0.71 6.96 -13.29 -0.09 0.62 16 23 C -0.10 -0.74 6.28 -91.77 -0.58 -1.31 16 24 C -0.15 -0.94 10.12 -26.73 -0.27 -1.21 16 25 C -0.15 -0.91 10.23 -26.73 -0.27 -1.18 16 26 S 0.23 2.36 23.06 -107.50 -2.48 -0.12 16 27 H 0.06 0.57 7.46 -51.93 -0.39 0.18 16 28 H 0.10 1.40 7.23 -51.93 -0.38 1.02 16 29 H 0.08 0.89 5.05 -51.93 -0.26 0.63 16 30 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.10 1.18 7.39 -51.93 -0.38 0.80 16 32 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.39 10.55 7.67 -40.82 -0.31 10.23 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.20 1.94 4.37 -52.49 -0.23 1.71 16 41 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.88 7.84 -51.93 -0.41 0.47 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -34.28 389.39 -9.71 -43.99 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.55 Total: 6.28 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.04 Total: 2.53 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.24 Total: -60.40 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.24 Total: -15.62 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.48 Total: -0.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.28 -9.71 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725802892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.468 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds