Wall clock time and date at job start Tue Mar 31 2020 23:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00236 * 2 1 4 4 C 1.53001 * 109.47169 * 270.00186 * 3 2 1 5 5 O 1.42902 * 109.46973 * 64.99904 * 4 3 2 6 6 C 1.42898 * 113.99703 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46879 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46860 * 65.00548 * 7 6 5 9 9 C 1.36932 * 119.99797 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00280 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00290 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99386 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00437 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47031 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46959 * 119.99983 * 13 11 9 16 16 H 1.48497 * 109.47475 * 240.00296 * 13 11 9 17 17 C 1.34780 * 120.00413 * 180.02562 * 2 1 3 18 18 O 1.21681 * 120.00333 * 182.35799 * 17 2 1 19 19 C 1.46687 * 119.99488 * 2.35414 * 17 2 1 20 20 C 1.35663 * 126.12769 * 342.23027 * 19 17 2 21 21 N 1.30947 * 114.18685 * 180.02562 * 20 19 17 22 22 C 1.29427 * 117.36478 * 0.02562 * 21 20 19 23 23 C 1.50699 * 124.80445 * 179.97438 * 22 21 20 24 24 C 1.53003 * 117.49947 * 8.65059 * 23 22 21 25 25 C 1.53001 * 117.49871 * 300.02689 * 23 22 21 26 26 S 1.70949 * 110.39037 * 0.02562 * 22 21 20 27 27 H 1.09000 * 109.47089 * 264.61751 * 1 2 3 28 28 H 1.09003 * 109.47178 * 24.61574 * 1 2 3 29 29 H 1.09001 * 109.47127 * 144.61066 * 1 2 3 30 30 H 1.09006 * 109.47279 * 30.00023 * 3 2 1 31 31 H 1.09005 * 109.47510 * 150.00157 * 3 2 1 32 32 H 1.09008 * 109.46870 * 184.99504 * 4 3 2 33 33 H 1.08993 * 109.47615 * 304.99586 * 4 3 2 34 34 H 1.08994 * 109.47894 * 299.99699 * 6 5 4 35 35 H 1.08998 * 109.47052 * 60.00751 * 6 5 4 36 36 H 1.09005 * 109.46823 * 185.00227 * 7 6 5 37 37 H 1.08993 * 109.47260 * 305.00033 * 7 6 5 38 38 H 0.96993 * 119.99851 * 0.02562 * 8 7 6 39 39 H 0.97006 * 119.99880 * 179.97438 * 12 11 9 40 40 H 1.07994 * 122.90820 * 0.06311 * 20 19 17 41 41 H 1.09003 * 115.54911 * 154.35714 * 23 22 21 42 42 H 1.09004 * 117.49714 * 359.97438 * 24 23 22 43 43 H 1.08994 * 117.50229 * 145.01558 * 24 23 22 44 44 H 1.09000 * 117.49953 * 214.97807 * 25 23 22 45 45 H 1.09003 * 117.50188 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9936 -2.0813 6 6 1.3324 2.4176 -3.4401 7 6 -0.0567 2.6906 -4.0205 8 7 -0.6662 3.8218 -3.3167 9 6 -1.9184 4.2515 -3.6666 10 1 -2.4565 3.7568 -4.4618 11 6 -2.4962 5.3229 -2.9995 12 7 -1.8403 5.9260 -2.0309 13 14 -4.2041 5.9096 -3.4773 14 1 -4.7231 5.0707 -4.5874 15 1 -5.1114 5.7977 -2.3070 16 1 -4.1359 7.3263 -3.9171 17 6 2.1389 -1.1672 -0.0005 18 8 3.3550 -1.1676 0.0428 19 6 1.4064 -2.4370 -0.0533 20 6 0.0918 -2.6144 0.2309 21 7 -0.3216 -3.8508 0.1080 22 6 0.5488 -4.7353 -0.2598 23 6 0.2568 -6.2011 -0.4525 24 6 -1.2066 -6.6437 -0.3933 25 6 -0.2572 -6.9841 0.7573 26 16 2.0768 -4.0056 -0.4946 27 1 -0.3633 -0.0964 1.0231 28 1 -0.3634 0.9343 -0.4281 29 1 -0.3633 -0.8378 -0.5952 30 1 1.6084 2.0284 0.5139 31 1 3.1500 1.1384 0.5138 32 1 3.0732 2.6065 -1.4438 33 1 2.9642 0.9132 -1.9816 34 1 1.9296 3.3283 -3.4826 35 1 1.8209 1.6352 -4.0209 36 1 0.0327 2.9278 -5.0806 37 1 -0.6821 1.8065 -3.8975 38 1 -0.1825 4.2667 -2.6034 39 1 -2.2439 6.6750 -1.5649 40 1 -0.5578 -1.8058 0.5318 41 1 0.9133 -6.7237 -1.1483 42 1 -1.9581 -5.8747 -0.2146 43 1 -1.5132 -7.4575 -1.0504 44 1 0.0607 -8.0219 0.8572 45 1 -0.3839 -6.4391 1.6928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725802892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:29 Heat of formation + Delta-G solvation = 4.843319 kcal Electronic energy + Delta-G solvation = -26532.799066 eV Core-core repulsion = 22678.852173 eV Total energy + Delta-G solvation = -3853.946893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65229 -40.48424 -39.04830 -37.84268 -36.90959 -36.18426 -33.52027 -32.51030 -30.48958 -29.22553 -28.36509 -27.13511 -25.52397 -24.38021 -23.64778 -23.25380 -22.80450 -21.79698 -20.20534 -19.24372 -19.16987 -18.00364 -17.63197 -17.37583 -17.05610 -16.78371 -16.55396 -16.18654 -15.92280 -15.64254 -15.42146 -15.26006 -14.95665 -14.63478 -14.47551 -14.28941 -13.97304 -13.42642 -13.23343 -13.22619 -12.98804 -12.82971 -12.77151 -12.55788 -12.37835 -12.30098 -12.10028 -11.92671 -11.87673 -11.72181 -11.63156 -11.29897 -10.97205 -10.68920 -10.56394 -10.53171 -9.88930 -9.79379 -8.97458 -7.92367 -5.20793 -0.87097 0.00938 0.56003 1.28678 1.48706 1.49293 1.59438 1.87942 1.98768 2.57565 2.74311 2.82709 3.02492 3.41001 3.42309 3.70466 3.87515 3.94579 4.01302 4.02939 4.05040 4.06143 4.21175 4.27476 4.27985 4.44266 4.44732 4.49853 4.51447 4.64120 4.77208 4.80123 4.85279 4.90089 4.95101 5.00672 5.12576 5.14196 5.29471 5.33168 5.50514 6.11024 6.28020 6.32589 6.50065 6.86515 7.36153 8.11409 8.36483 9.31279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.002422 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.481345 B =11556.833324 C =12839.153714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.588 5.588 3 C 0.121 3.879 4 C 0.046 3.954 5 O -0.390 6.390 6 C 0.067 3.933 7 C 0.152 3.848 8 N -0.739 5.739 9 C -0.243 4.243 10 H 0.075 0.925 11 C -0.075 4.075 12 N -0.967 5.967 13 Si 0.973 3.027 14 H -0.267 1.267 15 H -0.293 1.293 16 H -0.294 1.294 17 C 0.591 3.409 18 O -0.576 6.576 19 C -0.326 4.326 20 C 0.087 3.913 21 N -0.500 5.500 22 C 0.081 3.919 23 C -0.119 4.119 24 C -0.146 4.146 25 C -0.143 4.143 26 S 0.235 5.765 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.022 0.978 38 H 0.376 0.624 39 H 0.250 0.750 40 H 0.214 0.786 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -26.690 5.432 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.319 5.319 3 C -0.002 4.002 4 C -0.032 4.032 5 O -0.310 6.310 6 C -0.010 4.010 7 C 0.025 3.975 8 N -0.382 5.382 9 C -0.375 4.375 10 H 0.093 0.907 11 C -0.268 4.268 12 N -0.618 5.618 13 Si 0.802 3.198 14 H -0.191 1.191 15 H -0.220 1.220 16 H -0.221 1.221 17 C 0.380 3.620 18 O -0.458 6.458 19 C -0.450 4.450 20 C -0.071 4.071 21 N -0.215 5.215 22 C -0.192 4.192 23 C -0.140 4.140 24 C -0.185 4.185 25 C -0.182 4.182 26 S 0.495 5.505 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.230 0.770 41 H 0.170 0.830 42 H 0.110 0.890 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.489 -27.257 5.196 29.017 hybrid contribution -0.992 1.884 0.170 2.136 sum 7.497 -25.373 5.366 26.996 Atomic orbital electron populations 1.22566 0.77893 1.04917 1.02772 1.47569 1.08172 1.05011 1.71120 1.21683 0.98922 0.84189 0.95387 1.22955 0.86651 0.99626 0.93932 1.87964 1.29561 1.87603 1.25862 1.22638 0.97079 0.98480 0.82786 1.20846 0.91886 0.89957 0.94778 1.42469 1.17258 1.36114 1.42366 1.19667 0.93565 1.10505 1.13790 0.90747 1.25550 1.02487 0.99557 0.99171 1.69834 1.39340 1.25557 1.27102 0.85084 0.79802 0.77569 0.77363 1.19116 1.21989 1.22076 1.16967 0.86081 0.82801 0.76176 1.90788 1.14100 1.87757 1.53147 1.25595 0.99685 0.99537 1.20215 1.23475 0.92376 0.94680 0.96607 1.66215 1.36119 1.01037 1.18098 1.27118 0.92946 1.00507 0.98629 1.20891 1.01806 0.85352 1.05978 1.23090 0.90419 1.03277 1.01723 1.23151 1.01713 1.01199 0.92106 1.83870 1.11080 0.96041 1.59479 0.89596 0.90294 0.89566 0.88243 0.87634 0.91070 0.93830 0.93264 0.91266 0.94042 0.95987 0.79198 0.94072 0.76973 0.83002 0.89010 0.85687 0.85110 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.37 8.54 127.77 1.09 2.46 16 2 N -0.59 -15.20 2.84 -851.49 -2.42 -17.62 16 3 C 0.12 3.04 5.80 86.38 0.50 3.54 16 4 C 0.05 1.26 6.28 71.98 0.45 1.71 16 5 O -0.39 -13.23 9.21 -148.98 -1.37 -14.60 16 6 C 0.07 2.21 6.07 71.98 0.44 2.64 16 7 C 0.15 6.15 6.65 86.38 0.57 6.73 16 8 N -0.74 -38.14 5.55 -343.44 -1.91 -40.05 16 9 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 10 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 11 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 12 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 13 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 17 C 0.59 16.76 7.65 86.45 0.66 17.42 16 18 O -0.58 -19.32 16.58 -4.29 -0.07 -19.39 16 19 C -0.33 -8.03 6.24 23.88 0.15 -7.88 16 20 C 0.09 1.91 9.29 84.23 0.78 2.70 16 21 N -0.50 -11.05 9.98 -190.31 -1.90 -12.94 16 22 C 0.08 1.52 6.96 88.46 0.62 2.14 16 23 C -0.12 -1.44 6.28 -11.54 -0.07 -1.51 16 24 C -0.15 -1.58 10.12 30.60 0.31 -1.27 16 25 C -0.14 -1.35 10.23 30.60 0.31 -1.04 16 26 S 0.23 4.76 23.06 -56.49 -1.30 3.45 16 27 H 0.09 1.51 7.46 -2.39 -0.02 1.49 16 28 H 0.08 2.20 7.23 -2.39 -0.02 2.18 16 29 H 0.09 1.87 5.05 -2.39 -0.01 1.86 16 30 H 0.10 2.41 8.07 -2.38 -0.02 2.39 16 31 H 0.11 2.52 7.39 -2.38 -0.02 2.50 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.38 20.77 7.67 -92.71 -0.71 20.06 16 39 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 40 H 0.21 3.93 4.37 -2.91 -0.01 3.92 16 41 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.37 7.84 -2.38 -0.02 1.35 16 43 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.21 389.39 0.77 -72.44 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.31 Total: 28.68 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 7.12 Total: 10.88 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -5.94 Total: -129.73 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.44 Total: -33.99 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.30 Total: 3.45 kcal Total: -73.21 0.77 -72.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725802892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.282 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds