Wall clock time and date at job start Tue Mar 31 2020 23:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99929 * 2 1 4 4 H 1.07998 * 119.99826 * 204.71385 * 3 2 1 5 5 C 1.38806 * 119.99956 * 24.71577 * 3 2 1 6 6 N 1.31622 * 119.99873 * 6.52912 * 5 3 2 7 7 Si 1.86803 * 120.00370 * 186.53000 * 5 3 2 8 8 H 1.48503 * 109.46741 * 59.99719 * 7 5 3 9 9 H 1.48495 * 109.47332 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46727 * 300.00223 * 7 5 3 11 11 C 1.46504 * 120.00162 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46754 * 269.99725 * 11 2 1 13 13 C 1.53005 * 109.46938 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99969 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99982 * 180.02562 * 15 14 13 18 18 N 1.46506 * 109.47302 * 180.02562 * 17 15 14 19 19 C 1.46497 * 120.00014 * 270.00387 * 18 17 15 20 20 C 1.34776 * 120.00007 * 89.99826 * 18 17 15 21 21 O 1.21706 * 120.00144 * 359.94586 * 20 18 17 22 22 C 1.46583 * 120.00004 * 179.97438 * 20 18 17 23 23 C 1.36647 * 125.45863 * 171.75662 * 22 20 18 24 24 C 1.37468 * 113.29542 * 179.97438 * 23 22 20 25 25 C 1.33815 * 115.10542 * 0.02562 * 24 23 22 26 26 S 1.70616 * 110.95193 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.46851 * 275.02627 * 1 2 3 28 28 H 1.08997 * 109.47466 * 35.02867 * 1 2 3 29 29 H 1.08999 * 109.47115 * 155.02878 * 1 2 3 30 30 H 0.97004 * 119.99861 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.46848 * 150.00031 * 11 2 1 32 32 H 1.08995 * 109.46890 * 30.00019 * 11 2 1 33 33 H 1.09001 * 109.47193 * 60.00517 * 12 11 2 34 34 H 1.09001 * 109.47471 * 299.99435 * 12 11 2 35 35 H 1.09004 * 109.47267 * 60.00075 * 13 12 11 36 36 H 1.09001 * 109.47196 * 300.00370 * 13 12 11 37 37 H 0.96999 * 120.00352 * 0.02562 * 14 13 12 38 38 H 1.08994 * 109.47160 * 60.00075 * 17 15 14 39 39 H 1.09007 * 109.47135 * 300.00179 * 17 15 14 40 40 H 1.09004 * 109.46494 * 263.40201 * 19 18 17 41 41 H 1.09003 * 109.47225 * 23.39381 * 19 18 17 42 42 H 1.08997 * 109.47518 * 143.40277 * 19 18 17 43 43 H 1.07995 * 123.35297 * 0.25519 * 23 22 20 44 44 H 1.08003 * 122.45162 * 180.02562 * 24 23 22 45 45 H 1.08004 * 124.52761 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1555 1.2288 -0.3910 5 6 1.5510 2.3330 0.5026 6 7 0.3782 2.2575 1.0954 7 14 2.4096 3.9838 0.3378 8 1 2.6214 4.2901 -1.0998 9 1 1.5680 5.0428 0.9503 10 1 3.7217 3.9306 1.0311 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 6 3.2182 -3.0356 1.4412 14 7 3.4619 -3.4594 2.8222 15 6 4.1243 -4.6070 3.0680 16 8 4.5191 -5.2887 2.1459 17 6 4.3745 -5.0432 4.4886 18 7 5.1077 -6.3116 4.4882 19 6 4.3759 -7.5807 4.4863 20 6 6.4554 -6.3109 4.4893 21 8 7.0634 -5.2566 4.4898 22 6 7.1890 -7.5800 4.4894 23 6 8.5396 -7.7149 4.3310 24 6 8.9639 -9.0218 4.3729 25 6 7.9963 -9.9273 4.5585 26 16 6.4722 -9.1725 4.6938 27 1 -0.3633 0.0900 1.0237 28 1 -0.3634 0.8415 -0.5898 29 1 -0.3633 -0.9316 -0.4338 30 1 -0.0403 3.0591 1.4463 31 1 3.1500 -1.1381 -0.5144 32 1 1.6085 -2.0281 -0.5147 33 1 1.5002 -1.8416 1.9555 34 1 3.0417 -0.9515 1.9559 35 1 4.1706 -2.9047 0.9275 36 1 2.6295 -3.7953 0.9269 37 1 3.1458 -2.9144 3.5597 38 1 3.4218 -5.1741 5.0016 39 1 4.9631 -4.2839 5.0036 40 1 4.2958 -7.9553 5.5068 41 1 3.3777 -7.4240 4.0775 42 1 4.9096 -8.3071 3.8735 43 1 9.2076 -6.8779 4.1915 44 1 10.0025 -9.2976 4.2639 45 1 8.1586 -10.9935 4.6160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731244015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:57 Heat of formation + Delta-G solvation = -2.411312 kcal Electronic energy + Delta-G solvation = -26131.586366 eV Core-core repulsion = 22277.324889 eV Total energy + Delta-G solvation = -3854.261477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54471 -39.18568 -37.77963 -36.28021 -35.72327 -34.67192 -32.08664 -30.98483 -29.99352 -28.62764 -27.11394 -25.92945 -25.36027 -24.49014 -22.15245 -21.41588 -20.64602 -19.89846 -19.43932 -18.41301 -17.36382 -16.86460 -16.69418 -16.21462 -15.94080 -15.49579 -15.37643 -15.08543 -14.60457 -14.23015 -13.83574 -13.75789 -13.52023 -13.41525 -13.29889 -13.09002 -12.99808 -12.94560 -12.67128 -12.46620 -12.14923 -11.57007 -11.27800 -11.05951 -10.96331 -10.79676 -10.72887 -10.47357 -10.35605 -10.19328 -10.08844 -9.90190 -9.75398 -9.29586 -9.04599 -8.92791 -8.78014 -8.53926 -6.73171 -5.71446 -3.19786 0.18347 1.12864 1.56804 2.06278 2.39505 2.63085 2.92820 3.36696 3.40578 3.44382 3.45812 4.15085 4.50645 4.53643 4.64178 4.71339 4.79850 4.93973 4.95776 5.13378 5.15442 5.20600 5.28734 5.47561 5.54284 5.60283 5.79275 5.85219 5.92058 5.97798 5.99156 6.14816 6.24852 6.45369 6.61845 6.77988 6.84916 6.87562 7.02421 7.41465 7.55484 7.76043 7.78402 7.82317 8.24934 8.42839 9.26129 9.88252 10.37916 11.33146 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025509 B = 0.001792 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.403081 B =15621.743544 C =16111.261331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.911 5.911 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.121 3.879 14 N -0.723 5.723 15 C 0.492 3.508 16 O -0.536 6.536 17 C 0.097 3.903 18 N -0.595 5.595 19 C 0.067 3.933 20 C 0.596 3.404 21 O -0.523 6.523 22 C -0.267 4.267 23 C -0.053 4.053 24 C -0.150 4.150 25 C -0.258 4.258 26 S 0.225 5.775 27 H 0.029 0.971 28 H 0.043 0.957 29 H -0.005 1.005 30 H 0.252 0.748 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.402 0.598 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.153 0.847 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 -26.618 11.714 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.556 5.556 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.003 4.003 14 N -0.375 5.375 15 C 0.276 3.724 16 O -0.413 6.413 17 C -0.029 4.029 18 N -0.328 5.328 19 C -0.078 4.078 20 C 0.384 3.616 21 O -0.400 6.400 22 C -0.387 4.387 23 C -0.086 4.086 24 C -0.181 4.181 25 C -0.395 4.395 26 S 0.493 5.507 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.236 0.764 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.171 0.829 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.132 -26.968 11.313 30.354 hybrid contribution 1.766 1.551 0.117 2.354 sum 9.898 -25.416 11.429 29.574 Atomic orbital electron populations 1.20810 0.82519 0.95323 0.99337 1.43946 1.01939 1.00660 1.86026 1.19183 0.99176 0.86022 1.33949 0.91497 1.25109 0.97445 0.98713 0.98365 1.70042 1.16443 1.27581 1.41549 0.86320 0.78767 0.83590 0.77766 1.21048 1.21633 1.20919 1.20717 0.95951 0.88234 0.92274 1.22546 0.99525 0.93987 1.02953 1.21507 1.00270 0.97063 0.81438 1.46135 1.57723 1.23553 1.10104 1.21065 0.78078 0.81456 0.91782 1.90700 1.50421 1.54191 1.45999 1.21386 0.98929 0.87460 0.95153 1.47126 1.05297 1.06549 1.73796 1.22051 0.98503 0.84853 1.02394 1.16960 0.81202 0.87515 0.75878 1.90851 1.67617 1.31751 1.49823 1.24505 0.98443 0.96830 1.18888 1.20804 0.93501 0.98078 0.96227 1.20019 1.01074 0.91731 1.05277 1.25909 1.00537 1.05168 1.07903 1.83492 1.05568 0.95262 1.66389 0.95302 0.93805 0.98673 0.93742 0.93673 0.94354 0.92168 0.91254 0.91849 0.92027 0.76437 0.86971 0.86428 0.91137 0.88898 0.90359 0.82950 0.84101 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.00 59.85 0.54 4.60 16 2 N -0.60 -15.17 2.92 -181.12 -0.53 -15.70 16 3 C -0.25 -6.98 9.66 -15.06 -0.15 -7.12 16 4 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 5 C 0.00 0.05 5.22 -17.43 -0.09 -0.05 16 6 N -0.91 -26.39 10.48 55.49 0.58 -25.81 16 7 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 12 C -0.15 -2.62 5.65 -26.73 -0.15 -2.77 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 14 N -0.72 -9.38 5.56 -60.29 -0.33 -9.72 16 15 C 0.49 6.71 7.90 -10.99 -0.09 6.62 16 16 O -0.54 -9.47 16.43 5.56 0.09 -9.38 16 17 C 0.10 0.95 5.86 -5.19 -0.03 0.92 16 18 N -0.60 -6.30 2.36 -184.54 -0.44 -6.74 16 19 C 0.07 0.46 8.92 59.85 0.53 1.00 16 20 C 0.60 7.82 7.64 -12.90 -0.10 7.72 16 21 O -0.52 -8.69 16.43 5.18 0.09 -8.61 16 22 C -0.27 -2.85 6.24 -36.79 -0.23 -3.08 16 23 C -0.05 -0.52 10.02 -40.44 -0.41 -0.93 16 24 C -0.15 -1.16 10.15 -41.41 -0.42 -1.58 16 25 C -0.26 -1.71 10.92 29.18 0.32 -1.39 16 26 S 0.22 1.53 17.89 -107.50 -1.92 -0.39 16 27 H 0.03 0.76 7.34 -51.93 -0.38 0.38 16 28 H 0.04 1.16 7.27 -51.93 -0.38 0.79 16 29 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 32 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 4.24 8.47 -40.82 -0.35 3.90 16 38 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.12 1.17 7.42 -51.92 -0.39 0.78 16 40 H 0.07 0.31 7.76 -51.93 -0.40 -0.09 16 41 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 42 H 0.08 0.56 4.62 -23.22 -0.11 0.46 16 43 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 44 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -36.17 387.10 -8.54 -44.71 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.57 Total: -0.02 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.31 Total: 8.90 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.72 Total: -57.96 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.18 Total: -17.99 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.92 Total: -0.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.17 -8.54 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731244015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds